Bhi05G001631 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G001631
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	DDE_4 domain-containing protein
Location	chr5 : 59188932 .. 59189184 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCAGAACCGATTACAAATACATGCACCGATGGAAGATGGAAGTGGTTTCAGGTACAAAAATTACTCAGTTTTTTATATGAATACGTCATAAATATGCATGCAACAATAGATTTTTTTTTTTAATTCATTCTGATCACTTGAGAGAAACAGAATTGTCTAGGTGCGCTAGACGGCACATACATTAAAGTGAATGTTAGTGTCGTCGATCAACCTCGATATAGGACGAGAAAGGGAGAGATTGCCACAAAC

mRNA sequence

AAAACCAGAACCGATTACAAATACATGCACCGATGGAAGATGGAAGTGGTTTCAGAATTGTCTAGGTGCGCTAGACGGCACATACATTAAAGTGAATGTTAGTGTCGTCGATCAACCTCGATATAGGACGAGAAAGGGAGAGATTGCCACAAAC

Coding sequence (CDS)

AAAACCAGAACCGATTACAAATACATGCACCGATGGAAGATGGAAGTGGTTTCAGAATTGTCTAGGTGCGCTAGACGGCACATACATTAAAGTGAATGTTAGTGTCGTCGATCAACCTCGATATAGGACGAGAAAGGGAGAGATTGCCACAAAC

Protein sequence

KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN

Homology

[Close]

BLAST of Bhi05G001631 vs. TAIR10
Match: AT5G28950.1 (unknown protein)

HSP 1 Score: 40.8 bits (94), Expect = 2.9e-04
Identity = 16/38 (42.11%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 14 WKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
          + +F++C+GA+D T+I   VS    P +R RKG+I+ N
Sbjct: 19 YPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQN 56

[Close]

BLAST of Bhi05G001631 vs. TrEMBL
Match: tr|A0A1S3C1U8|A0A1S3C1U8_CUCME (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-20
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           KP+P+TN+CTD RWKWF+NCLGALDGTYIKVNVS  D+PRYRTRKGE+ATN
Sbjct: 79  KPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYRTRKGEVATN 129

[Close]

BLAST of Bhi05G001631 vs. TrEMBL
Match: tr|A0A1S3C5E3|A0A1S3C5E3_CUCME (uncharacterized protein LOC103496660 OS=Cucumis melo OX=3656 GN=LOC103496660 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-18
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           K +P+TN+CTD RWKWF+NCLGALD TYIKVNVS  D+PRY+TRKGE+ATN
Sbjct: 79  KLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYKTRKGEVATN 129

[Close]

BLAST of Bhi05G001631 vs. TrEMBL
Match: tr|A0A2H3X8X5|A0A2H3X8X5_PHODC (uncharacterized protein LOC103699964 OS=Phoenix dactylifera OX=42345 GN=LOC103699964 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           KPE +T  CTD RWKWF+NCLGALDGTYIKVNV   D+PRYR+RKGEIATN
Sbjct: 55  KPEAVTENCTDERWKWFKNCLGALDGTYIKVNVEEADKPRYRSRKGEIATN 105

[Close]

BLAST of Bhi05G001631 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-17
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           KP+P+ N CTD RW+WF+NCLGALDGTYIKVNV   D+ RYRTRKGE+ATN
Sbjct: 246 KPQPVPNDCTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATN 296

[Close]

BLAST of Bhi05G001631 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-17
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           KP+P+ N CTD RW+WF+NCLGALDGTYIKVNV   D+ RYRTRKGE+ATN
Sbjct: 121 KPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATN 171

[Close]

BLAST of Bhi05G001631 vs. NCBI nr
Match: XP_008455792.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 5.3e-20
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           KP+P+TN+CTD RWKWF+NCLGALDGTYIKVNVS  D+PRYRTRKGE+ATN
Sbjct: 79  KPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYRTRKGEVATN 129

[Close]

BLAST of Bhi05G001631 vs. NCBI nr
Match: XP_008456821.1 (PREDICTED: uncharacterized protein LOC103496660 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 6.5e-18
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           K +P+TN+CTD RWKWF+NCLGALD TYIKVNVS  D+PRY+TRKGE+ATN
Sbjct: 79  KLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYKTRKGEVATN 129

[Close]

BLAST of Bhi05G001631 vs. NCBI nr
Match: XP_008780171.1 (PREDICTED: uncharacterized protein LOC103699964, partial [Phoenix dactylifera])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           KPE +T  CTD RWKWF+NCLGALDGTYIKVNV   D+PRYR+RKGEIATN
Sbjct: 55  KPEAVTENCTDERWKWFKNCLGALDGTYIKVNVEEADKPRYRSRKGEIATN 105

[Close]

BLAST of Bhi05G001631 vs. NCBI nr
Match: XP_024045039.1 (protein ALP1-like [Citrus clementina])

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-17
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           KPEPITN  TD +WKWF NCLGALDGTYIKV+VS  D+PRYRTRK EIATN
Sbjct: 114 KPEPITNNSTDPKWKWFTNCLGALDGTYIKVHVSEADKPRYRTRKNEIATN 164

[Close]

BLAST of Bhi05G001631 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.5 bits (236), Expect = 5.5e-17
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   KPEPITNTCTDGRWKWFQNCLGALDGTYIKVNVSVVDQPRYRTRKGEIATN 52
           KP+P+ N CTD RW+WF+NCLGALDGTYIKVNV   D+ RYRTRKGE+ATN
Sbjct: 121 KPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATN 171

The following BLAST results are available for this feature:

BLAST of Bhi05G001631 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi05G001631 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28950.1	2.9e-04	42.11	unknown protein	[more]

BLAST of Bhi05G001631 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1U8\|A0A1S3C1U8_CUCME	3.5e-20	82.35	putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=4 SV=1	[more]
tr\|A0A1S3C5E3\|A0A1S3C5E3_CUCME	4.3e-18	76.47	uncharacterized protein LOC103496660 OS=Cucumis melo OX=3656 GN=LOC103496660 PE=...	[more]
tr\|A0A2H3X8X5\|A0A2H3X8X5_PHODC	1.3e-17	78.43	uncharacterized protein LOC103699964 OS=Phoenix dactylifera OX=42345 GN=LOC10369...	[more]
tr\|A0A1S3C8Z4\|A0A1S3C8Z4_CUCME	3.6e-17	74.51	uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=...	[more]
tr\|E5GCB5\|E5GCB5_CUCME	3.6e-17	74.51	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Bhi05G001631 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455792.1	5.3e-20	82.35	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
XP_008456821.1	6.5e-18	76.47	PREDICTED: uncharacterized protein LOC103496660 [Cucumis melo]	[more]
XP_008780171.1	1.9e-17	78.43	PREDICTED: uncharacterized protein LOC103699964, partial [Phoenix dactylifera]	[more]
XP_024045039.1	4.2e-17	80.39	protein ALP1-like [Citrus clementina]	[more]
ADN34114.1	5.5e-17	74.51	retrotransposon protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001631	Bhi05M001631	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF112	SUBFAMILY NOT NAMED	coord: 2..51
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..51

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G001631	Wax gourd	wgowgoB071
Bhi05G001631	Cucumber (Gy14) v1	cgywgoB288
Bhi05G001631	Cucumber (Gy14) v2	cgybwgoB633
Bhi05G001631	Cucurbita maxima (Rimu)	cmawgoB0117
Bhi05G001631	Cucurbita maxima (Rimu)	cmawgoB0643
Bhi05G001631	Cucurbita maxima (Rimu)	cmawgoB0659
Bhi05G001631	Cucurbita maxima (Rimu)	cmawgoB0679
Bhi05G001631	Cucurbita maxima (Rimu)	cmawgoB0740
Bhi05G001631	Cucurbita moschata (Rifu)	cmowgoB0109
Bhi05G001631	Cucurbita moschata (Rifu)	cmowgoB0234
Bhi05G001631	Cucurbita moschata (Rifu)	cmowgoB0643
Bhi05G001631	Cucurbita moschata (Rifu)	cmowgoB0661
Bhi05G001631	Cucurbita moschata (Rifu)	cmowgoB0730
Bhi05G001631	Cucurbita pepo (Zucchini)	cpewgoB0318
Bhi05G001631	Cucurbita pepo (Zucchini)	cpewgoB0333
Bhi05G001631	Cucurbita pepo (Zucchini)	cpewgoB0627
Bhi05G001631	Cucurbita pepo (Zucchini)	cpewgoB0844
Bhi05G001631	Cucurbita pepo (Zucchini)	cpewgoB0933
Bhi05G001631	Wild cucumber (PI 183967)	cpiwgoB673
Bhi05G001631	Cucumber (Chinese Long) v3	cucwgoB687
Bhi05G001631	Cucumber (Chinese Long) v2	cuwgoB662
Bhi05G001631	Bottle gourd (USVL1VR-Ls)	lsiwgoB116
Bhi05G001631	Melon (DHL92) v3.6.1	medwgoB221
Bhi05G001631	Melon (DHL92) v3.5.1	mewgoB221
Bhi05G001631	Watermelon (Charleston Gray)	wcgwgoB270
Bhi05G001631	Watermelon (Charleston Gray)	wcgwgoB586
Bhi05G001631	Watermelon (97103) v2	wgowmbB245
Bhi05G001631	Watermelon (97103) v2	wgowmbB262
Bhi05G001631	Watermelon (97103) v1	wgowmB268
Bhi05G001631	Watermelon (97103) v1	wgowmB277
Bhi05G001631	Silver-seed gourd	carwgoB0642
Bhi05G001631	Silver-seed gourd	carwgoB0847