Bhi05G000547 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G000547
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	chr5 : 22016005 .. 22016232 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAGATGGGTTAATTCCTAATGTCTTTACATATAATATACTTTTGAAGGCATTGTGCAAGAATGACCGTGTTGATGCTGCACACAAGCTGTTTGTCGAAATGTCAAGTAACGGCTGCCCACCTTACGTGGTTAACTATACGACTATGGTGTCTTCACTGTGTAAAGCAGGTAAGATTGATGATGCTAGAGAGCTAGCGGGAAGATTTAATGGAAATGTCTAG

mRNA sequence

ATGAAGAAAGATGGGTTAATTCCTAATGTCTTTACATATAATATACTTTTGAAGGCATTGTGCAAGAATGACCGTGTTGATGCTGCACACAAGCTGTTTGTCGAAATGTCAAGTAACGGCTGCCCACCTTACGTGGTTAACTATACGACTATGGTGTCTTCACTGTGTAAAGCAGGTAAGATTGATGATGCTAGAGAGCTAGCGGGAAGATTTAATGGAAATGTCTAG

Coding sequence (CDS)

ATGAAGAAAGATGGGTTAATTCCTAATGTCTTTACATATAATATACTTTTGAAGGCATTGTGCAAGAATGACCGTGTTGATGCTGCACACAAGCTGTTTGTCGAAATGTCAAGTAACGGCTGCCCACCTTACGTGGTTAACTATACGACTATGGTGTCTTCACTGTGTAAAGCAGGTAAGATTGATGATGCTAGAGAGCTAGCGGGAAGATTTAATGGAAATGTCTAG

Protein sequence

MKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSSNGCPPYVVNYTTMVSSLCKAGKIDDARELAGRFNGNV

Homology

[Close]

BLAST of Bhi05G000547 vs. TAIR10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 42.0 bits (97), Expect = 1.9e-04
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1   MKKDGLIPNVFTYNILLKALCKND-RVDAAHKLFVEM 37
           M++ GL P V + N+L+KALC+ND  VDA  K+F+EM
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEM 183

[Close]

BLAST of Bhi05G000547 vs. TAIR10
Match: AT2G17525.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 41.6 bits (96), Expect = 2.5e-04
Identity = 19/36 (52.78%), Postives = 21/36 (58.33%), Query Frame = 0


Query: 1   MKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEM 37
           MK  G+ PN   YN LL ALCKN +V  A  L  EM
Sbjct: 208 MKTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSEM 243

[Close]

BLAST of Bhi05G000547 vs. TAIR10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 40.8 bits (94), Expect = 4.3e-04
Identity = 15/32 (46.88%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 5   GLIPNVFTYNILLKALCKNDRVDAAHKLFVEM 37
           G+ PN+FT N+L+KALCK + +++A+K+  E+
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEI 217

[Close]

BLAST of Bhi05G000547 vs. TrEMBL
Match: tr|A0A1S3VQZ6|A0A1S3VQZ6_VIGRR (pentatricopeptide repeat-containing protein At3g48810 OS=Vigna radiata var. radiata OX=3916 GN=LOC106777539 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEM 37
           MK DGL PNVFTYNILLKALCKN +VD A KL VEM
Sbjct: 169 MKGDGLEPNVFTYNILLKALCKNGKVDGACKLLVEM 204

[Close]

BLAST of Bhi05G000547 vs. TrEMBL
Match: tr|A0A1Q3BUQ0|A0A1Q3BUQ0_CEPFO (PPR domain-containing protein/PPR_2 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_15171 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 4   DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMS 38
           DG+ PNV+TYNILLKALCKNDRVD A KL VEMS
Sbjct: 84  DGIEPNVYTYNILLKALCKNDRVDNACKLLVEMS 117

[Close]

BLAST of Bhi05G000547 vs. TrEMBL
Match: tr|A0A2G2XPJ9|A0A2G2XPJ9_CAPBA (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_01796 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 5  GLIPNVFTYNILLKALCKNDRVDAAHKLFVEMS 38
          G++P V+TYNILLKALCKN+RVD A KL VEMS
Sbjct: 62 GIVPKVYTYNILLKALCKNNRVDGAQKLLVEMS 94

[Close]

BLAST of Bhi05G000547 vs. TrEMBL
Match: tr|A0A0L9UTH3|A0A0L9UTH3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g148100 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-05
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1   MKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVE 36
           MK +GL PNVFTYNILLKALCKN +VD A KL VE
Sbjct: 169 MKGEGLEPNVFTYNILLKALCKNGKVDGACKLLVE 203

[Close]

BLAST of Bhi05G000547 vs. TrEMBL
Match: tr|A0A0S3T0S2|A0A0S3T0S2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G012800 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-05
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1   MKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVE 36
           MK +GL PNVFTYNILLKALCKN +VD A KL VE
Sbjct: 169 MKGEGLEPNVFTYNILLKALCKNGKVDGACKLLVE 203

[Close]

BLAST of Bhi05G000547 vs. NCBI nr
Match: XP_014520617.1 (pentatricopeptide repeat-containing protein At3g48810 [Vigna radiata var. radiata])

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   MKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEM 37
           MK DGL PNVFTYNILLKALCKN +VD A KL VEM
Sbjct: 169 MKGDGLEPNVFTYNILLKALCKNGKVDGACKLLVEM 204

[Close]

BLAST of Bhi05G000547 vs. NCBI nr
Match: GAV71681.1 (PPR domain-containing protein/PPR_2 domain-containing protein, partial [Cephalotus follicularis])

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 4   DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMS 38
           DG+ PNV+TYNILLKALCKNDRVD A KL VEMS
Sbjct: 84  DGIEPNVYTYNILLKALCKNDRVDNACKLLVEMS 117

[Close]

BLAST of Bhi05G000547 vs. NCBI nr
Match: GAU34044.1 (hypothetical protein TSUD_16320 [Trifolium subterraneum])

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEM 37
          MK +GL PNVFTYNILLKALCKN +VD A KL VEM
Sbjct: 1  MKGEGLEPNVFTYNILLKALCKNGKVDGACKLLVEM 36

[Close]

BLAST of Bhi05G000547 vs. NCBI nr
Match: PHT59433.1 (hypothetical protein CQW23_01796 [Capsicum baccatum])

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 5  GLIPNVFTYNILLKALCKNDRVDAAHKLFVEMS 38
          G++P V+TYNILLKALCKN+RVD A KL VEMS
Sbjct: 62 GIVPKVYTYNILLKALCKNNRVDGAQKLLVEMS 94

[Close]

BLAST of Bhi05G000547 vs. NCBI nr
Match: XP_020216164.1 (pentatricopeptide repeat-containing protein At3g48810 [Cajanus cajan] >XP_020216165.1 pentatricopeptide repeat-containing protein At3g48810 [Cajanus cajan])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 1   MKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMS 38
           MK +GL PNVFTYN+LLK LC N +VDAA KL VEMS
Sbjct: 215 MKGEGLQPNVFTYNVLLKGLCLNGKVDAACKLLVEMS 251

The following BLAST results are available for this feature:

BLAST of Bhi05G000547 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi05G000547 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46100.1	1.9e-04	54.05	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G17525.1	2.5e-04	52.78	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G16420.1	4.3e-04	46.88	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of Bhi05G000547 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3VQZ6\|A0A1S3VQZ6_VIGRR	1.9e-06	80.56	pentatricopeptide repeat-containing protein At3g48810 OS=Vigna radiata var. radi...	[more]
tr\|A0A1Q3BUQ0\|A0A1Q3BUQ0_CEPFO	2.5e-06	82.35	PPR domain-containing protein/PPR_2 domain-containing protein (Fragment) OS=Ceph...	[more]
tr\|A0A2G2XPJ9\|A0A2G2XPJ9_CAPBA	1.2e-05	75.76	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_01796 PE=4 SV=1	[more]
tr\|A0A0L9UTH3\|A0A0L9UTH3_PHAAN	2.1e-05	77.14	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g148100 PE...	[more]
tr\|A0A0S3T0S2\|A0A0S3T0S2_PHAAN	2.1e-05	77.14	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G...	[more]

BLAST of Bhi05G000547 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_014520617.1	2.9e-06	80.56	pentatricopeptide repeat-containing protein At3g48810 [Vigna radiata var. radiat...	[more]
GAV71681.1	3.8e-06	82.35	PPR domain-containing protein/PPR_2 domain-containing protein, partial [Cephalot...	[more]
GAU34044.1	8.4e-06	77.78	hypothetical protein TSUD_16320 [Trifolium subterraneum]	[more]
PHT59433.1	1.9e-05	75.76	hypothetical protein CQW23_01796 [Capsicum baccatum]	[more]
XP_020216164.1	2.4e-05	72.97	pentatricopeptide repeat-containing protein At3g48810 [Cajanus cajan] >XP_020216...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000547	Bhi05M000547	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 11..43 e-value: 8.0E-12 score: 42.6 coord: 48..67 e-value: 1.9E-5 score: 22.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 8..57 e-value: 3.2E-17 score: 62.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 9..43 score: 13.822
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 44..74 score: 7.465
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 1..72 e-value: 1.0E-22 score: 82.5
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 1..68

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G000547	Cucumber (Gy14) v1	cgywgoB377
Bhi05G000547	Cucumber (Gy14) v2	cgybwgoB535
Bhi05G000547	Cucurbita maxima (Rimu)	cmawgoB0116
Bhi05G000547	Cucurbita moschata (Rifu)	cmowgoB0118
Bhi05G000547	Cucurbita pepo (Zucchini)	cpewgoB0853
Bhi05G000547	Wild cucumber (PI 183967)	cpiwgoB565
Bhi05G000547	Cucumber (Chinese Long) v3	cucwgoB578
Bhi05G000547	Cucumber (Chinese Long) v2	cuwgoB560
Bhi05G000547	Bottle gourd (USVL1VR-Ls)	lsiwgoB320
Bhi05G000547	Melon (DHL92) v3.6.1	medwgoB475
Bhi05G000547	Melon (DHL92) v3.5.1	mewgoB473
Bhi05G000547	Watermelon (Charleston Gray)	wcgwgoB036