Bhi05G000142 (gene) Wax gourd

Overview
NameBhi05G000142
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionH/ACA ribonucleoprotein complex subunit 3-like protein
Locationchr5 : 3880742 .. 3885342 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCACCCGCCCTTGGTCCCTCTCTCCCATCGCCCTCGCCGTTCGTCTAGTGCTGCACCACCGCCGGACGTCCTGCACCAACTTCTCCGTCCCGCCGCCGTTCGTCTTTTGCCGCACCTCTGTTCGTCTCTTGCCGCACCCCTGTTCGTCTCGTGAATCACTTCCTTCTCTGTTCTTTTCGTGTTTTATTGTTTGTTTAGCCTTTAATCTTGTTTGTGTTATCAATAGACAATAAATTTGCTTCGAACCAAAAAATCCCTAATTTTTTTCACAGGTTGAGTGTTTAACAACGATGTATCTTCAGTTTTACATCAACGACAATGGTGATAAAGTATACACCACGAAGGTTTGTCTTTCTTGTTCCTGCTTTTGCTCTGTGTAAAAGTTCATTGATATCACATTATTTGAGTATTGGGATTGAATTTTTTTTTTATCCTCAATGCATAAACTGAGTCTGCTGCGTCTTAGATAAGCAGTGCTATATGGATTCCCTGATTTTGAAGATAATGAAGAATTACTGAGTCAATGACCATAAGTTTTGGAGTCTGGATTAGTCCTATTTGAAGTAGGCTACCGTTATTAAGTGCGAGTAATTTGTGCAGTTACATGTTGCGTTCCCATTAAATGATTGATTAAATCTATAGTAAACTTTTGCTTAGAATGTCTCAATTTTACAAAAAGTTTGCGGTCAGGCTTTGAGCTTTGTTCCAAGAACTTCCAATCCTACCTTCTTTACTTTACTATGTCATCCATACCATGATGGTAGTTTAGAATTACGTTTGACGTCCCTTGACTATGAAGGAGGAGAAGTTTTAAGACTTTAGACGTCATTCTTTCTCTACTCACTTCCCCAAAACAAAACGTAACAATTCATAAAAGTTTAATCTCCAAAACTATTGAATTTTGGACAAGAGAAATGAACTTGTAATCATTCAATACTTTCATTTACAAAGTGGGAAAAATGCATAATTGGAGTAGTCAGATATAACACCAAGTCATTCATTCAGAGACGTCGATTAGCAATTGACCAAAACATTTGTTTACTTAAGTGTGAGGCCAATGGAATGCCAAACCACCAATAATTGCCTTCCCACTAGTTAGTTTCAAATATATCATACACCATCAACTCCAATTTTGGCTACTACAACAAATAAGCATACAATCCACAAAACAGAATGTGGCATATCCAGGTAGTCCCATCTAATTGAACTTTTCTTTTTTTGAATAAACATTTGAAACAAAGCATATAGTTTAAAATAACAAGTTTAATAGAAGCATTCATCTAATTAAACCAATCAATTAGAAGTAACAACACGAAAACGGAAACACTTTCAATTCAAAATGAATTGAAAACATTTCCAAAAATCTTTCAAAACAGTCACATACTTTCATTTAGCAAAACCATTAAAATATCCCAAACAATTTCAGTTGATTCTCAAGTCACATAAAACATGCTTTCAAACGTTCAAAACATACCCTCAACTCTTGTCAAATCACACTATTCAAAACATAACTTTATCAAAATTTATATTTTGGAGGGGATGTTGAAATTATTTATCCCGAAGCTACTCACAAAAGTTTCAGTCTCGAAAGTCCACTATTTCTACTTGAACTAAGCTCAATCTTTCAGGTACCTAAACATAACCGACGCTTCATGCTCAGAAACCAAATTCCAACTTAACGGTCTAAAACTTATCTAAAACTCACACAATCTCGTCTACCCAAATTTCTCACTCAAAAGAAATTTTCTGTGGTACACAATAGAAAACTACACCCTCCCAACCTCAGGCTAAAAACAGTAAAACTAAAGCTTTCCAAAACATATAAAATACCAAACAATTTTCCATTCTACAACAAACCTTCAAAGCTATCCTAAACTATGGGCAAACAAAACGGAAAAATTTATTCTTGATAAAACAAAATTCCTCAAGACTTCAACACAGAAGAAAATAAGATTTTCCAAGTTTTTAACACAAAATCAGATCTGAAAGTGTGATAAAACTGCTGTAAAAACATTAAAAACATACAATTTTTGAGTAGAAATCAAAACTATAAGTTACCCCTCATAGGAGCAATTCCGTGCAAAAAGGAGATTCCAAAAACACTCAAAACCGTCCCAAATTTAAAGAAAACAATGCTAGAAATTTCTGAAACAATTTCCCCATTATCATCAAACCTTGAATTCTTAAATAAAAGGACCTAACTGAAAACTTTGATGCCATAAACTTTGGTAAAACAATTGGTAAAACAAGAAAAAACCAAAAATTTTTTTCAGGGCAAAAGATTTTTCCAAACCTTTCATTCTAATTCATCAATAATAATGAAGACAGAAAAAATCAATGCCCCAAAACTTTAGTAGGCAAGAAAAGAAGAAAACACCAAAGTTAGGTCTTTAAGAGATCCTTATAAAGAATCTCAGTTAAATTCCATAAAGGATCAAATTCTTTTTCATTAAAAAAAAACTAGATACTAATTTCTTTGGAAGATTGGTTCCTCCATAAAACTTTTATTAGGGGGATAGTCCTATTATGTAAAAGTAGATCCTTGCGATCCATAACGTGAGCTGGAACCTTCTCATAAGTCAGATCTTCCTTTAGTTGCAATGGTGCATTGCACATAGGAAATATCCGCAATATGCCTTCAAAGCATGGAGACATGGAAAGTATTATGGATTCGATCGAAGGCATGCAGTAAGGCCAAGCGATACGCCACTACACCCACCCTTTACACAATCTCAAAAGGTCCAATAAACCCTAGGCTAAGCTTCCTTTACTTCCCAAACTTCAGTATTCCTTTTAACGACAAGACTTTCAAAAACACCATGTTTCCGACTTCAAAATTTAGTTCTTTTCTTTTGATATCATTGTAGCTTTTCTGCCGACTGTGAGCTGTCTCCATTCTTTGCTTAACTAAGCCGATTGTCTCAATAGCTTTCTACATTGACTTGGGTCCCATAATGAAACTCTGCTTACTTCAGTCCAATTGATCGACGACCTACACTTATGCCCTTAGAGTGCCTCAAAAGATGCCATTCCAATAGTTTCTTGATAGCTGTTATTATAACAAAACTCTATTAAAGATGCAAATGTTACTCCCAGCTTCCCTGGAAGTCCAAAGCACAAGCTCAAAGCATATCCTCTACTATTTTAATTGCCCTTTCCATTTGACCGTCTGTTGGGGGGTGGACCAAGGTACTGAAATCAAGTGTCGTGCCTAAAGTCCTGTGCACACTTTTGTTTAAATGTAAATTTTGGATCTCAAGTCTGATACTATAGAACACATTTTAGAGTTGGTAGAAATTTTTCATTTCATCTTTGGTAGAATGGTATATTTGCGAAAGCAAACCATTGTGCCAATAAAATACAAATGAAAGAATCCCTGCAAACACGTTTCATCTGGCTTGATAAAACCGAGTATCAACTACTTATGTATTGGGGCCCTCTGCATTATTGTATTTATCCATCTCATTTCGTTGTCCATCTTCTTTTCTTCTCTTCTGCATTTGAACTTTTTCGGTTGTAATTGTTCCCTCTAATTTTGGTGTACTTCCATATTGTACTCTATGGATTATTTCATTCATGAATGAAAATTTTCTTCTCTCAAAAAAAGATAAAACCGAGTATCAAGAAAACAAACTAGCTCGATAAACCATTGCTTATTGCCCCTGCACTTTTTGTACCTTTTTTTGTGCTGACAATTTTATGCTAACTTATCTGGTTTGCATTTTTCTCTCTTGTACAGAAGGAAACACCTCTAGGTTTGGCCACACAATCTGCTCATCCAGGTAAAATTCTTTGCCTTATTTGGCTAGTTGAGTGCCATCTCGTTTCACTGACTTGCATAATTAGCAATATCAGTGATTCTGGTAGGGAGAAAGACCTGCTGTAATATTTCTGTTTTTGTTGTGTCTTGAAATAATATGCATGGTCTATTTCAGTTGTGATTTTCATTGTGGCCGAGGCTACTGTGAAAATTGGAATCATATATTATTAAGAATGGATATGCACTGTTCATGTACATGATGCAGACATGTATCATCGGTTGACATGTAGAAGTGGATAATACCATTGCTTGCCGTTGTCCATAGAGATGCCATCGTTTGTTATCTATATTGAGTGAATTAATTCAGATACTACTCGCTAGGCTATCCCTTCAATGTGGGGGTCATGGTTTTTTAACAGTTTCGGGCCCCTGATAGCCTGTTCTACATTTTTCTGACTGCAGCTCGTTTCTCCCCCGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCTACACAGCAGCCACCTCCAAAGTACTGAACTTGTCAACGCATTCTGAAATCAACTCTATGGCACTACTCAAGTGTTTGTTTCCCAATTCCCCACCTATAGAGTAGATAGTGACTCGGTTAAACTTTGATAGATAGTTTTGCCTTTTTCTCTATGGCTTGTAATGGAGCTGTAAAGCACAATTCACTGTTGAACCTTTCTTTAAGCTTGTCATCTGCTTTATAAGTAATGAACTTTATTTTACTGAAAGCAAACTTATCTACTTTGAAGATCTGGTTTTAATGCAAGATAATGGGCCTTTTTTTCGTA

mRNA sequence

GAGCACCCGCCCTTGGTCCCTCTCTCCCATCGCCCTCGCCGTTCGTCTAGTGCTGCACCACCGCCGGACGTCCTGCACCAACTTCTCCGTCCCGCCGCCGTTCGTCTTTTGCCGCACCTCTGTTCGTCTCTTGCCGCACCCCTGTTGAGTGTTTAACAACGATGTATCTTCAGTTTTACATCAACGACAATGGTGATAAAGTATACACCACGAAGAAGGAAACACCTCTAGGTTTGGCCACACAATCTGCTCATCCAGCTCGTTTCTCCCCCGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCTACACAGCAGCCACCTCCAAAGTACTGAACTTGTCAACGCATTCTGAAATCAACTCTATGGCACTACTCAAGTGTTTGTTTCCCAATTCCCCACCTATAGAGTAGATAGTGACTCGGTTAAACTTTGATAGATAGTTTTGCCTTTTTCTCTATGGCTTGTAATGGAGCTGTAAAGCACAATTCACTGTTGAACCTTTCTTTAAGCTTGTCATCTGCTTTATAAGTAATGAACTTTATTTTACTGAAAGCAAACTTATCTACTTTGAAGATCTGGTTTTAATGCAAGATAATGGGCCTTTTTTTCGTA

Coding sequence (CDS)

ATGTATCTTCAGTTTTACATCAACGACAATGGTGATAAAGTATACACCACGAAGAAGGAAACACCTCTAGGTTTGGCCACACAATCTGCTCATCCAGCTCGTTTCTCCCCCGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCTACACAGCAGCCACCTCCAAAGTACTGA

Protein sequence

MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Homology
[Close]
BLAST of Bhi05G000142 vs. Swiss-Prot
Match: sp|Q93XX8|NOP10_ARATH (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 6.2e-25
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQ YIN+ G+KVYTTKKE+PLGLAT+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  
Sbjct: 1  MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 61 PPKY 65
          P +Y
Sbjct: 61 PLQY 64

[Close]
BLAST of Bhi05G000142 vs. Swiss-Prot
Match: sp|Q6DRH5|NOP10_DANRE (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-19
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          M+LQFY+N+NG++VYT KK  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQQP
Sbjct: 1  MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60

Query: 61 PP 63
           P
Sbjct: 61 RP 62

[Close]
BLAST of Bhi05G000142 vs. Swiss-Prot
Match: sp|Q9V5P6|NOP10_DROME (H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=CG7637 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-18
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYL + IN+NGD+VYT KK T  G  T SAHPARFSP+DKYSRQR+ +KKRFGLL TQ+P
Sbjct: 1  MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60

Query: 61 PPKY 65
           P Y
Sbjct: 61 EPIY 64

[Close]
BLAST of Bhi05G000142 vs. Swiss-Prot
Match: sp|Q9NPE3|NOP10_HUMAN (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQQP
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 61 PP 63
           P
Sbjct: 61 RP 62

[Close]
BLAST of Bhi05G000142 vs. Swiss-Prot
Match: sp|Q9CQS2|NOP10_MOUSE (H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQQP
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 61 PP 63
           P
Sbjct: 61 RP 62

[Close]
BLAST of Bhi05G000142 vs. TAIR10
Match: AT2G20490.1 (nucleolar RNA-binding Nop10p family protein)

HSP 1 Score: 114.0 bits (284), Expect = 3.4e-26
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQ YIN+ G+KVYTTKKE+PLGLAT+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  
Sbjct: 1  MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 61 PPKY 65
          P +Y
Sbjct: 61 PLQY 64

[Close]
BLAST of Bhi05G000142 vs. TrEMBL
Match: tr|A0A1S3BHD2|A0A1S3BHD2_CUCME (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Cucumis melo OX=3656 GN=LOC103489864 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.2e-29
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYINDNGDKVYTTKKE+PLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Bhi05G000142 vs. TrEMBL
Match: tr|A0A2P2IS35|A0A2P2IS35_RHIMU (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.2e-29
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYINDNGDKVYTTKKE+PLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Bhi05G000142 vs. TrEMBL
Match: tr|A0A2G9GIP1|A0A2G9GIP1_9LAMI (H/ACA snoRNP complex, subunit NOP10 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22395 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-28
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYIN+NGDKVYTTKKE+PLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Bhi05G000142 vs. TrEMBL
Match: tr|M0S1K9|M0S1K9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103992599 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-28
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYIN+NGDKVYTTKKE+PLG+ATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINENGDKVYTTKKESPLGMATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Bhi05G000142 vs. TrEMBL
Match: tr|I3SRG6|I3SRG6_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYINDNGDKVYTTKKE+PLG ATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGNATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Bhi05G000142 vs. NCBI nr
Match: XP_015957125.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis duranensis] >XP_015968038.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis duranensis] >XP_016190259.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis ipaensis] >XP_016207587.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis ipaensis] >XP_025690500.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis hypogaea] >XP_025603224.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis hypogaea] >XP_025638752.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis hypogaea] >XP_025663306.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis hypogaea])

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Bhi05G000142 vs. NCBI nr
Match: XP_008447412.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo] >XP_016900440.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 7.9e-29
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYINDNGDKVYTTKKE+PLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Bhi05G000142 vs. NCBI nr
Match: XP_011651438.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_021665893.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Hevea brasiliensis] >PIN05065.1 H/ACA snoRNP complex, subunit NOP10 [Handroanthus impetiginosus])

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-28
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYIN+NGDKVYTTKKE+PLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Bhi05G000142 vs. NCBI nr
Match: XP_009410656.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Musa acuminata subsp. malaccensis] >XP_009410663.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Musa acuminata subsp. malaccensis])

HSP 1 Score: 132.9 bits (333), Expect = 3.9e-28
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYIN+NGDKVYTTKKE+PLG+ATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINENGDKVYTTKKESPLGMATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Bhi05G000142 vs. NCBI nr
Match: AFK42858.1 (unknown [Lotus japonicus])

HSP 1 Score: 132.5 bits (332), Expect = 5.1e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60
          MYLQFYINDNGDKVYTTKKE+PLG ATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGNATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 PPKY 65
          PPKY
Sbjct: 61 PPKY 64

The following BLAST results are available for this feature:
BLAST of Bhi05G000142 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q93XX8|NOP10_ARATH6.2e-2582.81H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O... [more]
sp|Q6DRH5|NOP10_DANRE1.3e-1970.97H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S... [more]
sp|Q9V5P6|NOP10_DROME1.1e-1868.75H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=... [more]
sp|Q9NPE3|NOP10_HUMAN3.3e-1866.13H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 ... [more]
sp|Q9CQS2|NOP10_MOUSE3.3e-1866.13H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3... [more]
BLAST of Bhi05G000142 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20490.13.4e-2682.81nucleolar RNA-binding Nop10p family protein[more]
BLAST of Bhi05G000142 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BHD2|A0A1S3BHD2_CUCME5.2e-2998.44H/ACA ribonucleoprotein complex subunit 3-like protein OS=Cucumis melo OX=3656 G... [more]
tr|A0A2P2IS35|A0A2P2IS35_RHIMU5.2e-2998.44H/ACA ribonucleoprotein complex subunit 3-like protein OS=Rhizophora mucronata O... [more]
tr|A0A2G9GIP1|A0A2G9GIP1_9LAMI1.5e-2896.88H/ACA snoRNP complex, subunit NOP10 OS=Handroanthus impetiginosus OX=429701 GN=C... [more]
tr|M0S1K9|M0S1K9_MUSAM2.6e-2895.31Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103992... [more]
tr|I3SRG6|I3SRG6_LOTJA3.4e-2896.88Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
BLAST of Bhi05G000142 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_015957125.12.7e-29100.00H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis duranensis] >XP_... [more]
XP_008447412.17.9e-2998.44PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo]... [more]
XP_011651438.12.3e-2896.88PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativ... [more]
XP_009410656.13.9e-2895.31PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Musa acuminat... [more]
AFK42858.15.1e-2896.88unknown [Lotus japonicus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0042254ribosome biogenesis
Vocabulary: Molecular Function
TermDefinition
GO:0030515snoRNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036756H/ACA_rnp_Nop10_sf
IPR007264H/ACA_rnp_Nop10
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031118 rRNA pseudouridine synthesis
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0031120 snRNA pseudouridine synthesis
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0008250 oligosaccharyltransferase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0015030 Cajal body
cellular_component GO:0005730 nucleolus
cellular_component GO:0072588 box H/ACA RNP complex
cellular_component GO:0090661 box H/ACA telomerase RNP complex
cellular_component GO:0031429 box H/ACA snoRNP complex
cellular_component GO:0030529 intracellular ribonucleoprotein complex
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0070034 telomerase RNA binding
molecular_function GO:0034513 box H/ACA snoRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M000142Bhi05M000142mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PFAMPF04135Nop10pcoord: 3..52
e-value: 1.6E-20
score: 72.8
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PANTHERPTHR13305RIBOSOME BIOGENESIS PROTEIN NOP10coord: 1..64
IPR036756H/ACA ribonucleoprotein complex, subunit Nop10 superfamilyGENE3DG3DSA:2.20.28.40coord: 8..59
e-value: 1.8E-8
score: 36.1
IPR036756H/ACA ribonucleoprotein complex, subunit Nop10 superfamilySUPERFAMILYSSF144210Nop10-like SnoRNPcoord: 3..58

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi05G000142Csa3G379730Cucumber (Chinese Long) v2cuwgoB304
Bhi05G000142MELO3C012871Melon (DHL92) v3.5.1mewgoB401
Bhi05G000142ClCG07G001140Watermelon (Charleston Gray)wcgwgoB585
Bhi05G000142CSPI03G22420Wild cucumber (PI 183967)cpiwgoB307
Bhi05G000142CmaCh19G000970Cucurbita maxima (Rimu)cmawgoB0653
Bhi05G000142CmaCh02G017390Cucurbita maxima (Rimu)cmawgoB0730
Bhi05G000142CmoCh02G017820Cucurbita moschata (Rifu)cmowgoB0725
Bhi05G000142CmoCh19G001100Cucurbita moschata (Rifu)cmowgoB0654
Bhi05G000142Cp4.1LG05g01130Cucurbita pepo (Zucchini)cpewgoB0936
Bhi05G000142Cp4.1LG15g00900Cucurbita pepo (Zucchini)cpewgoB0327
Bhi05G000142CsGy3G021490Cucumber (Gy14) v2cgybwgoB294
Bhi05G000142MELO3C012871.2Melon (DHL92) v3.6.1medwgoB402
Bhi05G000142Carg08959Silver-seed gourdcarwgoB0916
Bhi05G000142Carg16885Silver-seed gourdcarwgoB0888
Bhi05G000142CsaV3_3G022140Cucumber (Chinese Long) v3cucwgoB309
Bhi05G000142Cla97C07G129420Watermelon (97103) v2wgowmbB261
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi05G000142Wax gourdwgowgoB034
Bhi05G000142Wax gourdwgowgoB055
Bhi05G000142Cucumber (Gy14) v1cgywgoB528
Bhi05G000142Cucumber (Gy14) v1cgywgoB765
Bhi05G000142Cucumber (Gy14) v2cgybwgoB141
Bhi05G000142Cucumber (Gy14) v2cgybwgoB293
Bhi05G000142Cucurbita maxima (Rimu)cmawgoB0344
Bhi05G000142Cucurbita maxima (Rimu)cmawgoB0481
Bhi05G000142Cucurbita maxima (Rimu)cmawgoB1024
Bhi05G000142Cucurbita maxima (Rimu)cmawgoB1112
Bhi05G000142Cucurbita moschata (Rifu)cmowgoB0333
Bhi05G000142Cucurbita moschata (Rifu)cmowgoB0481
Bhi05G000142Cucurbita moschata (Rifu)cmowgoB1019
Bhi05G000142Cucurbita moschata (Rifu)cmowgoB1111
Bhi05G000142Cucurbita pepo (Zucchini)cpewgoB0196
Bhi05G000142Cucurbita pepo (Zucchini)cpewgoB0404
Bhi05G000142Cucurbita pepo (Zucchini)cpewgoB0800
Bhi05G000142Cucurbita pepo (Zucchini)cpewgoB1118
Bhi05G000142Wild cucumber (PI 183967)cpiwgoB147
Bhi05G000142Wild cucumber (PI 183967)cpiwgoB306
Bhi05G000142Cucumber (Chinese Long) v3cucwgoB155
Bhi05G000142Cucumber (Chinese Long) v3cucwgoB308
Bhi05G000142Cucumber (Chinese Long) v2cuwgoB148
Bhi05G000142Cucumber (Chinese Long) v2cuwgoB303
Bhi05G000142Bottle gourd (USVL1VR-Ls)lsiwgoB049
Bhi05G000142Bottle gourd (USVL1VR-Ls)lsiwgoB459
Bhi05G000142Bottle gourd (USVL1VR-Ls)lsiwgoB462
Bhi05G000142Melon (DHL92) v3.6.1medwgoB481
Bhi05G000142Melon (DHL92) v3.6.1medwgoB555
Bhi05G000142Melon (DHL92) v3.5.1mewgoB479
Bhi05G000142Melon (DHL92) v3.5.1mewgoB552
Bhi05G000142Watermelon (Charleston Gray)wcgwgoB447
Bhi05G000142Watermelon (Charleston Gray)wcgwgoB526
Bhi05G000142Watermelon (97103) v2wgowmbB257
Bhi05G000142Watermelon (97103) v2wgowmbB259
Bhi05G000142Watermelon (97103) v1wgowmB265
Bhi05G000142Watermelon (97103) v1wgowmB270
Bhi05G000142Watermelon (97103) v1wgowmB288
Bhi05G000142Silver-seed gourdcarwgoB0287
Bhi05G000142Silver-seed gourdcarwgoB0297
Bhi05G000142Silver-seed gourdcarwgoB1123
Bhi05G000142Silver-seed gourdcarwgoB1271