Bhi03G001714 (gene) Wax gourd

Overview
NameBhi03G001714
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionplectin-like
Locationchr3 : 47283504 .. 47284914 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATATGATGCGCTTGCTTTTCTTCAACACATTGGTCACCAATGAGATTAATGAACTAGAACGCCAGAGGATTTCCATTCAAGAAAGGAAGCAGGCGATGAAGAAACTTGAGCAACAAGAACTTTGGGCTCAGTGAGTATATTTTTTTAATTTGAAGTTGTTTGTCATCCGTAATAGTGTCTGTTAATATCGTAGCAATTATCTAACTCCTATGAATTTTGAATCTATTTCAAAATTGTGCAGTATCAAGTATTCTTTGACAAGCATAATTTTTATGTATTTTTAGTTAGAACTTGGACGTATAGAAGGTTTACTTTATATATATATATACAACTTATAGGTTATTGGCAGTGGCACCTTTGTTTCACTATTGATTGCTTGTGGTTAAAAAGGTTAACTAGGTAGACACTCCTATGAAGATGGCTGCTTAAAGTTTAAATTAACGAATGCTTTGTAGTGTAGTCTAATATTCGGTCCATGATATAAATAATGCCAACCTCTCCAGATGTTTATGCCATGGAATCTCTGTCCTATGTTGAAAATGGGATATTTTTCTACAGTGTATTTGAATTTTGCTAAAAGATGAGAGCAAGAAGAAACAAATGTAAGAATGATTAGTAAACAACACTACCAAGTATAAAAAGTTTTTAAAGTCATTATTTGTAAAAGAGGTGAACTAAACTTATATTGATTGTTAGGAATCCAAACAAAGTCCCATATTGACTAGAAAAGAGAGAGGTCTATGGAATATAAGTGAAGACAACTATTTCCGTTGGTACGAGCATTTTTTTTGTGAAACCAAAAGCAAAAGCCATGAGGGCTTATGCCTAAAGTAGGTGATATTATACCATTGTTGAGACAACCTTACTTGAATAGGATCTGTTCTATAGGTTGTACAACTGTGTCCTTGAGTTCTAAAATTATACCATTGTTGAGAGATGTGATGGATCTGGAACTGGAGTTCAATTCTGAATTTGTGGTAGTTGCAATTAGCATTCTTTTTAACTATGAACATATAAACTGGGTGGCTATCGAAGATTCCTGACAACTCAATTTCAGTAATGTTTTGTTGACATTAACTTCACAGTTCTCATTCTTCTAAATTGATGCATATTTTCTTTTCTTTTTTTCTTGCAGGCGGAAGCTTTCAATGTATGCTTCAGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCGTATCCTTCGTCTGAATTTATACTCTTTTCTGTTATATCTTCTTTTTCCCTATTGCAATTACTTTACCTTATCGTGAATCATTTACAGATATTGTGGACAGAGATAAACGGATTGTGCAAGAGTTCGAATTCGACTCGACTAAGATATCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCTCCATAG

mRNA sequence

ATGTATATGATGCGCTTGCTTTTCTTCAACACATTGGTCACCAATGAGATTAATGAACTAGAACGCCAGAGGATTTCCATTCAAGAAAGGAAGCAGGCGATGAAGAAACTTGAGCAACAAGAACTTTGGGCTCAGCGGAAGCTTTCAATGTATGCTTCAGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAGATAAACGGATTGTGCAAGAGTTCGAATTCGACTCGACTAAGATATCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCTCCATAG

Coding sequence (CDS)

ATGTATATGATGCGCTTGCTTTTCTTCAACACATTGGTCACCAATGAGATTAATGAACTAGAACGCCAGAGGATTTCCATTCAAGAAAGGAAGCAGGCGATGAAGAAACTTGAGCAACAAGAACTTTGGGCTCAGCGGAAGCTTTCAATGTATGCTTCAGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAGATAAACGGATTGTGCAAGAGTTCGAATTCGACTCGACTAAGATATCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCTCCATAG

Protein sequence

MYMMRLLFFNTLVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRDKRIVQEFEFDSTKISSFDICNGIWNMINSP
Homology
[Close]
BLAST of Bhi03G001714 vs. Swiss-Prot
Match: sp|Q67XT3|SPC24_ARATH (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.8e-21
Identity = 45/92 (48.91%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 12  LVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 71
           LV +E+ +L  Q  SI E KQ+ K+  + +L A++KLSMYASVT++IP++DD SKISG++
Sbjct: 108 LVADELKDLNAQLSSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYM 167

Query: 72  VDRDKRIVQEFEFDSTKISSFDICNGIWNMIN 104
           VDR+KR++++F+F++ K+++++ CN IW++IN
Sbjct: 168 VDREKRLIEKFQFETNKMTAYETCNSIWSIIN 199

[Close]
BLAST of Bhi03G001714 vs. TAIR10
Match: AT3G08880.1 (unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.9e-22
Identity = 45/92 (48.91%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 12  LVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 71
           LV +E+ +L  Q  SI E KQ+ K+  + +L A++KLSMYASVT++IP++DD SKISG++
Sbjct: 108 LVADELKDLNAQLSSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYM 167

Query: 72  VDRDKRIVQEFEFDSTKISSFDICNGIWNMIN 104
           VDR+KR++++F+F++ K+++++ CN IW++IN
Sbjct: 168 VDREKRLIEKFQFETNKMTAYETCNSIWSIIN 199

[Close]
BLAST of Bhi03G001714 vs. TAIR10
Match: AT5G01570.1 (unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-12
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 0 

Query: 28  QERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRDKRIVQEFEFDST 87
           +E + A+K+ ++ +L  + KL MYASVT +IPN+DD  K SG++V RDKR++ +FEFDS 
Sbjct: 111 EEHRLAIKRNKRDQLRTETKLPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEFDSN 170

Query: 88  KISS-FDICN 97
           K +S ++ CN
Sbjct: 171 KSTSVYETCN 180

[Close]
BLAST of Bhi03G001714 vs. TrEMBL
Match: tr|A0A0A0KXM7|A0A0A0KXM7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312820 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-42
Identity = 89/102 (87.25%), Postives = 98/102 (96.08%), Query Frame = 0 

Query: 4   MRLLFFNTLVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDD 63
           MRL+FFNTLVTNEINELE +R+S+QERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+D
Sbjct: 1   MRLVFFNTLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMED 60

Query: 64  QSKISGHIVDRDKRIVQEFEFDSTKISSFDICNGIWNMINSP 106
           QSKISGHIVDR+KR+VQ+FEFD  KISSFD CNG+WNMINSP
Sbjct: 61  QSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP 102

[Close]
BLAST of Bhi03G001714 vs. TrEMBL
Match: tr|A0A1S3CKZ4|A0A1S3CKZ4_CUCME (uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.7e-41
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 12  LVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 71
           LVTNEINELERQR+S+QERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI
Sbjct: 108 LVTNEINELERQRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 167

Query: 72  VDRDKRIVQEFEFDSTKISSFDICNGIWNMINSP 106
           VDR+KR+VQ+FEFD TKISSFD CNG+WNMINSP
Sbjct: 168 VDRNKRVVQKFEFDPTKISSFDTCNGLWNMINSP 201

[Close]
BLAST of Bhi03G001714 vs. TrEMBL
Match: tr|A0A2I4F2G6|A0A2I4F2G6_9ROSI (uncharacterized protein LOC108994891 OS=Juglans regia OX=51240 GN=LOC108994891 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.5e-28
Identity = 63/93 (67.74%), Postives = 79/93 (84.95%), Query Frame = 0 

Query: 12  LVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 71
           ++TNEIN+LE QR+S+QER+Q +KKLEQ EL AQR LS+YASVT+IIPN+DD+S+ SGHI
Sbjct: 108 IITNEINDLELQRVSVQERRQIVKKLEQDELRAQRMLSLYASVTNIIPNLDDESRFSGHI 167

Query: 72  VDRDKRIVQEFEFDSTKISSFDICNGIWNMINS 105
           VDRDK++V+ FEFD TKI   D CN IW MI+S
Sbjct: 168 VDRDKKVVERFEFDLTKIDCLDACNAIWKMISS 200

[Close]
BLAST of Bhi03G001714 vs. TrEMBL
Match: tr|A0A1R3JS85|A0A1R3JS85_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14480 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-26
Identity = 58/92 (63.04%), Postives = 82/92 (89.13%), Query Frame = 0 

Query: 13  VTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIV 72
           ++NEINELERQR SI+ERKQ ++KL+Q +L  QRKLSMYAS+T+IIP+++DQSKISGH+V
Sbjct: 101 ISNEINELERQRASIEERKQILRKLDQDKLKEQRKLSMYASITNIIPDLEDQSKISGHMV 160

Query: 73  DRDKRIVQEFEFDSTKISSFDICNGIWNMINS 105
           DRDK++V++FEFD  K+++F+ C+ +W MIN+
Sbjct: 161 DRDKKVVEKFEFDPAKMTAFEACDNLWKMINN 192

[Close]
BLAST of Bhi03G001714 vs. TrEMBL
Match: tr|A0A1U8MQ15|A0A1U8MQ15_GOSHI (uncharacterized protein LOC107938934 OS=Gossypium hirsutum OX=3635 GN=LOC107938934 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-26
Identity = 58/92 (63.04%), Postives = 83/92 (90.22%), Query Frame = 0 

Query: 13  VTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIV 72
           V+NEI ELERQR+SI+ERK+ ++K EQ +L  QRKLSMYAS+T+IIP+++DQS+ISGHIV
Sbjct: 109 VSNEIIELERQRVSIEERKKNLRKYEQDKLKEQRKLSMYASITNIIPDLEDQSRISGHIV 168

Query: 73  DRDKRIVQEFEFDSTKISSFDICNGIWNMINS 105
           DRDK+++++FEFD++K+++FD C+ +W MINS
Sbjct: 169 DRDKKVIKKFEFDTSKMTAFDACDSLWKMINS 200

[Close]
BLAST of Bhi03G001714 vs. NCBI nr
Match: KGN54400.1 (hypothetical protein Csa_4G312820 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-42
Identity = 89/102 (87.25%), Postives = 98/102 (96.08%), Query Frame = 0 

Query: 4   MRLLFFNTLVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDD 63
           MRL+FFNTLVTNEINELE +R+S+QERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+D
Sbjct: 1   MRLVFFNTLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMED 60

Query: 64  QSKISGHIVDRDKRIVQEFEFDSTKISSFDICNGIWNMINSP 106
           QSKISGHIVDR+KR+VQ+FEFD  KISSFD CNG+WNMINSP
Sbjct: 61  QSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP 102

[Close]
BLAST of Bhi03G001714 vs. NCBI nr
Match: XP_008464222.1 (PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 8.6e-41
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 12  LVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 71
           LVTNEINELERQR+S+QERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI
Sbjct: 108 LVTNEINELERQRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 167

Query: 72  VDRDKRIVQEFEFDSTKISSFDICNGIWNMINSP 106
           VDR+KR+VQ+FEFD TKISSFD CNG+WNMINSP
Sbjct: 168 VDRNKRVVQKFEFDPTKISSFDTCNGLWNMINSP 201

[Close]
BLAST of Bhi03G001714 vs. NCBI nr
Match: XP_004148609.1 (PREDICTED: uncharacterized protein LOC101211451 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 12  LVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 71
           LVTNEINELE +R+S+QERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHI
Sbjct: 108 LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHI 167

Query: 72  VDRDKRIVQEFEFDSTKISSFDICNGIWNMINSP 106
           VDR+KR+VQ+FEFD  KISSFD CNG+WNMINSP
Sbjct: 168 VDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP 201

[Close]
BLAST of Bhi03G001714 vs. NCBI nr
Match: XP_022950424.1 (uncharacterized protein LOC111453528 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 6.8e-38
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 12  LVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 71
           ++T+EIN+L+RQRIS+QERKQAMKKLEQQEL  QRKLSMYASVTDIIPNMDDQSKISGHI
Sbjct: 108 IITSEINDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHI 167

Query: 72  VDRDKRIVQEFEFDSTKISSFDICNGIWNMINSP 106
           VDR+KR+VQEFEFD T ISSFDICNGIWNMINSP
Sbjct: 168 VDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP 201

[Close]
BLAST of Bhi03G001714 vs. NCBI nr
Match: XP_022978290.1 (uncharacterized protein LOC111478320 [Cucurbita maxima])

HSP 1 Score: 166.0 bits (419), Expect = 6.8e-38
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 12  LVTNEINELERQRISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHI 71
           ++T+EIN+L+RQRIS+QERKQAMKKLEQQEL  QRKLSMYASVTDIIPNMDDQSKISGHI
Sbjct: 108 IITSEINDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHI 167

Query: 72  VDRDKRIVQEFEFDSTKISSFDICNGIWNMINSP 106
           VDR+KR+VQEFEFD T ISSFDICNGIWNMINSP
Sbjct: 168 VDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP 201

The following BLAST results are available for this feature:
BLAST of Bhi03G001714 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q67XT3|SPC24_ARATH8.8e-2148.91Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ... [more]
BLAST of Bhi03G001714 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G08880.14.9e-2248.91unknown protein[more]
AT5G01570.12.7e-1248.57unknown protein[more]
BLAST of Bhi03G001714 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXM7|A0A0A0KXM7_CUCSA1.4e-4287.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312820 PE=4 SV=1[more]
tr|A0A1S3CKZ4|A0A1S3CKZ4_CUCME5.7e-4191.49uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=... [more]
tr|A0A2I4F2G6|A0A2I4F2G6_9ROSI5.5e-2867.74uncharacterized protein LOC108994891 OS=Juglans regia OX=51240 GN=LOC108994891 P... [more]
tr|A0A1R3JS85|A0A1R3JS85_9ROSI1.4e-2663.04Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14480 PE=4 SV=1[more]
tr|A0A1U8MQ15|A0A1U8MQ15_GOSHI3.0e-2663.04uncharacterized protein LOC107938934 OS=Gossypium hirsutum OX=3635 GN=LOC1079389... [more]
BLAST of Bhi03G001714 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54400.12.1e-4287.25hypothetical protein Csa_4G312820 [Cucumis sativus][more]
XP_008464222.18.6e-4191.49PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo][more]
XP_004148609.12.4e-3887.23PREDICTED: uncharacterized protein LOC101211451 [Cucumis sativus][more]
XP_022950424.16.8e-3887.23uncharacterized protein LOC111453528 [Cucurbita moschata][more]
XP_022978290.16.8e-3887.23uncharacterized protein LOC111478320 [Cucurbita maxima][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M001714Bhi03M001714mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 10..40
NoneNo IPR availablePANTHERPTHR35730FAMILY NOT NAMEDcoord: 16..103

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi03G001714Csa4G312820Cucumber (Chinese Long) v2cuwgoB391
Bhi03G001714CSPI04G16100Wild cucumber (PI 183967)cpiwgoB395
Bhi03G001714CmoCh03G003460Cucurbita moschata (Rifu)cmowgoB0791
Bhi03G001714Lsi01G015700Bottle gourd (USVL1VR-Ls)lsiwgoB169
Bhi03G001714Cp4.1LG19g02590Cucurbita pepo (Zucchini)cpewgoB0608
Bhi03G001714CsGy4G015400Cucumber (Gy14) v2cgybwgoB374
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi03G001714Cucurbita pepo (Zucchini)cpewgoB0604