Bhi03G000608 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03G000608
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribulose bisphosphate carboxylase large chain
Location	chr3 : 15133412 .. 15133816 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACTTCCATTGTCGATAATGTATTTGGATTCAAGGCTCTACATGCTCTACGTCTGGAGGATTTGCGAATCCCTATTGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGAAAGAGATAAATTGAACAAGTATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATTCGCTAAGAATTATGGTAGAGTAGTTTATGAATGTCTATGCGATGGACTTGATTGTACCAAAGATGATGAAAACGTGAATTCCCAACTATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGGCATTACTTGAATCCTACTCAGATACATGTGAAGAAATGA

mRNA sequence

ATGTTTACTTCCATTGTCGATAATGTATTTGGATTCAAGGCTCTACATGCTCTACGTCTGGAGGATTTGCGAATCCCTATTGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGAAAGAGATAAATTGAACAAGTATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATTCGCTAAGAATTATGGTAGAGTAGTTTATGAATGTCTATGCGATGGACTTGATTGTACCAAAGATGATGAAAACGTGAATTCCCAACTATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGGCATTACTTGAATCCTACTCAGATACATGTGAAGAAATGA

Coding sequence (CDS)

ATGTTTACTTCCATTGTCGATAATGTATTTGGATTCAAGGCTCTACATGCTCTACGTCTGGAGGATTTGCGAATCCCTATTGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAGGTTGAAAGAGATAAATTGAACAAGTATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATTCGCTAAGAATTATGGTAGAGTAGTTTATGAATGTCTATGCGATGGACTTGATTGTACCAAAGATGATGAAAACGTGAATTCCCAACTATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGGCATTACTTGAATCCTACTCAGATACATGTGAAGAAATGA

Protein sequence

MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNPTQIHVKK

Homology

[Close]

BLAST of Bhi03G000608 vs. Swiss-Prot
Match: sp|Q31809|RBL_ASPLA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Asperula laevigata OX=29781 GN=rbcL PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 116 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 235

Query: 121 KGHYLNPT 129
           KGHYLN T
Sbjct: 236 KGHYLNAT 243

[Close]

BLAST of Bhi03G000608 vs. Swiss-Prot
Match: sp|P28395|RBL_CRAMA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crassula marnierana OX=45093 GN=rbcL PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 106 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 165

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 166 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 225

Query: 121 KGHYLNPT 129
           KGHYLN T
Sbjct: 226 KGHYLNAT 233

[Close]

BLAST of Bhi03G000608 vs. Swiss-Prot
Match: sp|Q31946|RBL_CRUAN (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crucianella angustifolia OX=29784 GN=rbcL PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 116 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 235

Query: 121 KGHYLNPT 129
           KGHYLN T
Sbjct: 236 KGHYLNAT 243

[Close]

BLAST of Bhi03G000608 vs. Swiss-Prot
Match: sp|Q31992|RBL_CRUGL (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cruciata glabra OX=29785 GN=rbcL PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 116 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 235

Query: 121 KGHYLNPT 129
           KGHYLN T
Sbjct: 236 KGHYLNAT 243

[Close]

BLAST of Bhi03G000608 vs. Swiss-Prot
Match: sp|Q32255|RBL_GALAL (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Galium album OX=29787 GN=rbcL PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 116 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 235

Query: 121 KGHYLNPT 129
           KGHYLN T
Sbjct: 236 KGHYLNAT 243

[Close]

BLAST of Bhi03G000608 vs. TAIR10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases)

HSP 1 Score: 245.7 bits (626), Expect = 1.6e-65
Identity = 117/128 (91.41%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP AY KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 116 MFTSIVGNVFGFKALAALRLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 235

Query: 121 KGHYLNPT 129
           KGHYLN T
Sbjct: 236 KGHYLNAT 243

[Close]

BLAST of Bhi03G000608 vs. TAIR10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-26
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 67  AKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEIKGHYLN 126
           AKNYGR VYECL  GL  TKDDENVNSQ FMRWRDRFLFCAEA+YK+QAETG IKGHYLN
Sbjct: 14  AKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLN 73

Query: 127 PT 129
            T
Sbjct: 74  AT 75

[Close]

BLAST of Bhi03G000608 vs. TAIR10
Match: ATMG00280.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-26
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 67  AKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEIKGHYLN 126
           AKNYGR VYECL  GL  TKDDENVNSQ FMRWRDRFLFCAEA+YK+QAETG IKGHYLN
Sbjct: 14  AKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLN 73

Query: 127 PT 129
            T
Sbjct: 74  AT 75

[Close]

BLAST of Bhi03G000608 vs. TrEMBL
Match: tr|G0WYL0|G0WYL0_9ASTR (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Gamochaeta pensylvanica OX=125697 GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 8.0e-64
Identity = 118/128 (92.19%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 101 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 160

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGLFAKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 161 PKLGLFAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 220

Query: 121 KGHYLNPT 129
           KGHYLN T
Sbjct: 221 KGHYLNAT 228

[Close]

BLAST of Bhi03G000608 vs. TrEMBL
Match: tr|W5XN02|W5XN02_9ASTE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Heliotropium erosum OX=244098 GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 118/131 (90.08%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 110 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 169

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 170 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 229

Query: 121 KGHYLNPTQIH 132
           KGHYLN T  H
Sbjct: 230 KGHYLNATAGH 240

[Close]

BLAST of Bhi03G000608 vs. TrEMBL
Match: tr|A0A1B2YKT6|A0A1B2YKT6_9ASTE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Heliotropium crispum OX=1891217 GN=rbcL PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 118/131 (90.08%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 9   MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 68

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 69  PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 128

Query: 121 KGHYLNPTQIH 132
           KGHYLN T  H
Sbjct: 129 KGHYLNATAGH 139

[Close]

BLAST of Bhi03G000608 vs. TrEMBL
Match: tr|A0A288QNM3|A0A288QNM3_9ASTE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Heliotropium bacciferum OX=244092 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 118/131 (90.08%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 51  MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 110

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 111 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 170

Query: 121 KGHYLNPTQIH 132
           KGHYLN T  H
Sbjct: 171 KGHYLNATAGH 181

[Close]

BLAST of Bhi03G000608 vs. TrEMBL
Match: tr|A0A288Q0C1|A0A288Q0C1_9ASTE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Heliotropium bacciferum OX=244092 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 118/131 (90.08%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 51  MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 110

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 111 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 170

Query: 121 KGHYLNPTQIH 132
           KGHYLN T  H
Sbjct: 171 KGHYLNATAGH 181

[Close]

BLAST of Bhi03G000608 vs. NCBI nr
Match: AEK34134.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Gamochaeta pensylvanica])

HSP 1 Score: 251.9 bits (642), Expect = 1.2e-63
Identity = 118/128 (92.19%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 101 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 160

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGLFAKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 161 PKLGLFAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 220

Query: 121 KGHYLNPT 129
           KGHYLN T
Sbjct: 221 KGHYLNAT 228

[Close]

BLAST of Bhi03G000608 vs. NCBI nr
Match: AOD75003.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Heliotropium crispum])

HSP 1 Score: 251.5 bits (641), Expect = 1.6e-63
Identity = 118/131 (90.08%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 9   MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 68

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 69  PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 128

Query: 121 KGHYLNPTQIH 132
           KGHYLN T  H
Sbjct: 129 KGHYLNATAGH 139

[Close]

BLAST of Bhi03G000608 vs. NCBI nr
Match: AOS58437.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Heliotropium bacciferum])

HSP 1 Score: 251.5 bits (641), Expect = 1.6e-63
Identity = 118/131 (90.08%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 51  MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 110

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 111 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 170

Query: 121 KGHYLNPTQIH 132
           KGHYLN T  H
Sbjct: 171 KGHYLNATAGH 181

[Close]

BLAST of Bhi03G000608 vs. NCBI nr
Match: AOS58438.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Heliotropium bacciferum])

HSP 1 Score: 251.5 bits (641), Expect = 1.6e-63
Identity = 118/131 (90.08%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 51  MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 110

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 111 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 170

Query: 121 KGHYLNPTQIH 132
           KGHYLN T  H
Sbjct: 171 KGHYLNATAGH 181

[Close]

BLAST of Bhi03G000608 vs. NCBI nr
Match: AHI17658.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Heliotropium erosum])

HSP 1 Score: 251.5 bits (641), Expect = 1.6e-63
Identity = 118/131 (90.08%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MFTSIVDNVFGFKALHALRLEDLRIPIAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 60
           MFTSIV NVFGFKAL ALRLEDLRIP+AY+KTFQGPPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 110 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 169

Query: 61  PKLGLFAKNYGRVVYECLCDGLDCTKDDENVNSQLFMRWRDRFLFCAEAIYKSQAETGEI 120
           PKLGL AKNYGR VYECL  GLD TKDDENVNSQ FMRWRDRFLFCAEAIYKSQAETGEI
Sbjct: 170 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 229

Query: 121 KGHYLNPTQIH 132
           KGHYLN T  H
Sbjct: 230 KGHYLNATAGH 240

The following BLAST results are available for this feature:

BLAST of Bhi03G000608 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q31809\|RBL_ASPLA	1.2e-65	91.41	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Asperula laevigata O...	[more]
sp\|P28395\|RBL_CRAMA	1.2e-65	91.41	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crassula marnierana ...	[more]
sp\|Q31946\|RBL_CRUAN	1.2e-65	91.41	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crucianella angustif...	[more]
sp\|Q31992\|RBL_CRUGL	1.2e-65	91.41	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cruciata glabra OX=2...	[more]
sp\|Q32255\|RBL_GALAL	1.2e-65	91.41	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Galium album OX=2978...	[more]

BLAST of Bhi03G000608 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00490.1	1.6e-65	91.41	ribulose-bisphosphate carboxylases	[more]
AT2G07732.1	4.2e-26	83.87	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]
ATMG00280.1	4.2e-26	83.87	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]

BLAST of Bhi03G000608 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|G0WYL0\|G0WYL0_9ASTR	8.0e-64	92.19	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Gamochaeta pensylvan...	[more]
tr\|W5XN02\|W5XN02_9ASTE	1.0e-63	90.08	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Heliotropium erosum ...	[more]
tr\|A0A1B2YKT6\|A0A1B2YKT6_9ASTE	1.0e-63	90.08	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Heliotropium crispum...	[more]
tr\|A0A288QNM3\|A0A288QNM3_9ASTE	1.0e-63	90.08	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Heliotropium baccife...	[more]
tr\|A0A288Q0C1\|A0A288Q0C1_9ASTE	1.0e-63	90.08	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Heliotropium baccife...	[more]

BLAST of Bhi03G000608 vs. NCBI nr


Match Name	E-value	Identity	Description
AEK34134.1	1.2e-63	92.19	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
AOD75003.1	1.6e-63	90.08	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
AOS58437.1	1.6e-63	90.08	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
AOS58438.1	1.6e-63	90.08	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
AHI17658.1	1.6e-63	90.08	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000287	magnesium ion binding
GO:0016984	ribulose-bisphosphate carboxylase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015977	carbon fixation

Vocabulary: **INTERPRO**
Term	Definition
IPR036422	RuBisCO_lsu_N_sf
IPR036376	RuBisCO_lsu_C_sf
IPR000685	RuBisCO_lsu_C
IPR017443	RuBisCO_lsu_fd_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0015977	carbon fixation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M000608	Bhi03M000608	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 1..29 e-value: 3.5E-5 score: 23.8
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 39..129 e-value: 3.6E-36 score: 124.8
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	G3DSA:3.20.20.110		coord: 34..132 e-value: 6.3E-38 score: 132.3
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	SSF51649	RuBisCo, C-terminal domain	coord: 33..128
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	G3DSA:3.30.70.150		coord: 1..33 e-value: 3.0E-8 score: 35.5
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	SSF54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 1..34
None	No IPR available	PANTHER	PTHR42704	FAMILY NOT NAMED	coord: 1..128
None	No IPR available	PANTHER	PTHR42704:SF2	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	coord: 1..128

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi03G000608	Cucumber (Chinese Long) v3	cucwgoB333
Bhi03G000608	Cucumber (Chinese Long) v3	cucwgoB648
Bhi03G000608	Cucumber (Chinese Long) v2	cuwgoB326
Bhi03G000608	Cucumber (Chinese Long) v2	cuwgoB628
Bhi03G000608	Bottle gourd (USVL1VR-Ls)	lsiwgoB168
Bhi03G000608	Bottle gourd (USVL1VR-Ls)	lsiwgoB569
Bhi03G000608	Bottle gourd (USVL1VR-Ls)	lsiwgoB614
Bhi03G000608	Melon (DHL92) v3.6.1	medwgoB563
Bhi03G000608	Melon (DHL92) v3.6.1	medwgoB658
Bhi03G000608	Melon (DHL92) v3.5.1	mewgoB559
Bhi03G000608	Melon (DHL92) v3.5.1	mewgoB651
Bhi03G000608	Watermelon (Charleston Gray)	wcgwgoB124
Bhi03G000608	Watermelon (Charleston Gray)	wcgwgoB227
Bhi03G000608	Watermelon (Charleston Gray)	wcgwgoB641
Bhi03G000608	Watermelon (97103) v2	wgowmbB402
Bhi03G000608	Watermelon (97103) v2	wgowmbB409
Bhi03G000608	Watermelon (97103) v2	wgowmbB445
Bhi03G000608	Watermelon (97103) v1	wgowmB413
Bhi03G000608	Watermelon (97103) v1	wgowmB415
Bhi03G000608	Watermelon (97103) v1	wgowmB432
Bhi03G000608	Silver-seed gourd	carwgoB0488
Bhi03G000608	Silver-seed gourd	carwgoB0516
Bhi03G000608	Silver-seed gourd	carwgoB0759
Bhi03G000608	Wax gourd	wgowgoB009
Bhi03G000608	Cucumber (Gy14) v1	cgywgoB026
Bhi03G000608	Cucumber (Gy14) v1	cgywgoB653
Bhi03G000608	Cucumber (Gy14) v2	cgybwgoB317
Bhi03G000608	Cucumber (Gy14) v2	cgybwgoB598
Bhi03G000608	Cucurbita maxima (Rimu)	cmawgoB0447
Bhi03G000608	Cucurbita maxima (Rimu)	cmawgoB0788
Bhi03G000608	Cucurbita maxima (Rimu)	cmawgoB0956
Bhi03G000608	Cucurbita maxima (Rimu)	cmawgoB1058
Bhi03G000608	Cucurbita pepo (Zucchini)	cpewgoB0097
Bhi03G000608	Cucurbita moschata (Rifu)	cmowgoB0443
Bhi03G000608	Cucurbita moschata (Rifu)	cmowgoB0781
Bhi03G000608	Cucurbita moschata (Rifu)	cmowgoB0956
Bhi03G000608	Cucurbita moschata (Rifu)	cmowgoB1051
Bhi03G000608	Cucurbita pepo (Zucchini)	cpewgoB0153
Bhi03G000608	Cucurbita pepo (Zucchini)	cpewgoB0303
Bhi03G000608	Cucurbita pepo (Zucchini)	cpewgoB0607
Bhi03G000608	Wild cucumber (PI 183967)	cpiwgoB329
Bhi03G000608	Wild cucumber (PI 183967)	cpiwgoB634