Cucurbit Expression Atlas


Overview of this BioProject:

BioProjectPRJNA437579
Cucumis sativus Cucurbita_maxima*Cucurbita_moschata Transcriptome. A salt-sensitive cucumber (Cucumis sativus L.) cv. Jinchun No. 2, and a salt-tolerant pumpkin (C. maxima × C. moschata) cv. Chaojiquanwang was used in this experiment .Seeds were surface sterilized with 1% HClO for 30 min and rinsed thoroughly with distilled water, and then incubated in the dark at 26°C until germination. Germinated seeds were then directly grown hydroponically in aerated basic salt media (BSM) solution (0.5 mM KCl, 0.1 mM CaCl2, pH 5.7 non-buffered) in the dark for 5-6 days at room temperature (24°C),Then the seedlings were subjected to 75 mM NaCl stress for a period of 24 hours,using 0 mM NaCl as control,Fresh root apexes (0-2 mm from the root tip) were harvested for RNA_seq experiment,3 biological repelicates for each treatment .

Properties this BioBroject:

Property NameValue
Data typeTranscriptome or Gene expression
Sample scopeMonoisolate
MaterialTranscriptome
CaptureRandomSurvey

BioSamples of this BioProject:

BioSampleOrganismDescription
Cucumber_ControlCucumberFresh root apexes of the salt-sensitive cultivar Jinchun No. 2 ; tissue : Fresh root apexes (0-2 mm from the root tip); geo_loc_name : China:Hubei; dev_stage : Seedlings after 24 hours 75 mM NaCl treatment; cultivar : Jinchun No. 2;
Cucumber_NaClCucumberFresh root apexes of the salt-sensitive cultivar Jinchun No. 2 after 24 hours 75 mM NaCl treatment ; tissue : Fresh root apexes (0-2 mm from the root tip); geo_loc_name : China:Hubei; dev_stage : Seedlings after 24 hours 75 mM NaCl treatment; cultivar : Jinchun No. 2;
Cmo_ControlCucurbita moschata (Rifu)Fresh root apexes of the salt-sensitive cultivar Chaojiquanwang ; tissue : Fresh root apexes (0-2 mm from the root tip); geo_loc_name : China:Hubei; dev_stage : Seedlings after 24 hours 75 mM NaCl treatment; cultivar : Chaojiquanwang; isolate : Pumpkin_Control_R1;
Cmo_NaClCucurbita moschata (Rifu)Fresh root apexes of the salt-sensitive cultivar Chaojiquanwang after 24-hour treatment of 75 mM NaCl ; tissue : Fresh root apexes (0-2 mm from the root tip); geo_loc_name : China:Hubei; dev_stage : Seedlings after 24 hours 75 mM NaCl treatment; cultivar : Chaojiquanwang; isolate : Pumpkin_NaCl_R1;