Cucurbit Expression Atlas


Overview of this BioProject:

BioProjectPRJNA321023
To investigate the candidate genes governing Pm5.1 and their effects on powdery resistance, the RNA-sequencing based transcriptomes of the powdery mildew resistant segment substitution line SSL508-28 and recurrent parent D8 were compared 48 h after inoculation with the PM pathogen. Overall design: mRNA levels of the leaves of SSL508-28 and D8 after 48 h of powdery mildew inoculation, along with uninfected control leaves from each, was generated by deep sequencing, in triplicate, using Illumina Hiseq2500

Properties this BioBroject:

Property NameValue
Data typeTranscriptome or Gene expression
Sample scopeMultiisolate
MaterialTranscriptome
CaptureRandomSurvey
Experimental_designsample D8_CT D8_PM SSL508-28_CT SSL508-28_PM # CT: Mock as control # PM: powdery mildew # SSL508-28: powdery mildew resistant segment substitution line SSL508-28 # D8: recurrent parent line D8

BioSamples of this BioProject:

BioSampleOrganismDescription
D8_CTCucumberD8 line control ; cultivar : D8 line; tissue : leaves; treatment : control;
D8_PMCucumberD8 line inoculated powdery mildew 48h ; cultivar : D8 line; tissue : leaves; treatment : inoculated with powdery mildew;
SSL508-28_CTCucumberSSL508-28 line control ; cultivar : SSL508-28 line; tissue : leaves; treatment : control;
SSL508-28_PMCucumberSSL508-28 line inoculated powdery mildew 48h ; cultivar : SSL508-28 line; tissue : leaves; treatment : inoculated with powdery mildew;