Cucurbit Expression Atlas


Overview of this BioProject:

BioProjectPRJNA382994
Transcriptomes of cucumber wild type line B and lines MSC3, MSC12 and MSC16 carrying mtDNA rearrangements. Cucumber MSC lines originated from different cell cultures all established from the wild-type inbred line B. MSC lines are characterized by slower growth, chlorotic patterns on the leaves and fruit, lower fertility, and complex rearrangements in their mitochondrial DNAs. RNA-seq was performed on normalized and non-normalized cDNA libraries from MSC3, MSC12, and MSC16 to study their nuclear gene-expression profiles relative to inbred B. Differentially expressed genes were identified. Mróz TL et al., "Transcriptome Analyses of Mosaic (MSC) Mitochondrial Mutants of Cucumber in a Highly Inbred Nuclear Background.", G3 (Bethesda), 2018 Mar 2;8(3):953-965

Properties this BioBroject:

Property NameValue
Data typeTranscriptome or Gene expression
Sample scopeMultiisolate
MaterialTranscriptome
CaptureRandomSurvey

BioSamples of this BioProject:

BioSampleOrganismDescription
CsLineBCucumberShoots from cucumber line B approx 12-day-old plants ; tissue : shoots; geo_loc_name : Poland: Warsaw; dev_stage : fully expanded first true leaf; age : approx. 12-days plants; cultivar : line B;
CsMSC12CucumberShoots from cucumber MSC12 approx 12-day-old plants ; tissue : shoots; geo_loc_name : Poland: Warsaw; dev_stage : fully expanded first true leaf; age : approx. 12-days plants; cultivar : line MSC12;
CsMSC16CucumberShoots from cucumber MSC16 approx 12-day-old plants ; tissue : shoots; geo_loc_name : Poland: Warsaw; dev_stage : fully expanded first true leaf; age : approx. 12-days plants; cultivar : line MSC16;
CsMSC3CucumberShoots from cucumber MSC3 approx 12-day-old plants ; tissue : shoots; geo_loc_name : Poland: Warsaw; dev_stage : fully expanded first true leaf; age : approx. 12-day plants; cultivar : line MSC3;