MELO3C010054 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010054
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Trab domain-containing
Location	chr2 : 11867627 .. 11867914 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCTTGCATGGTCTCTAAAGCGTAGCAAGGCGGTGGACAAGAGCAAGAGGGTGGTTGGGGTGATTGGAAGAGGCCATATGAACGGTGTCATTTATGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGTAGGTAAGAAAGCTGGAGAAGGTAATTCCAATGGCTTTGTTAACAATATCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTATGGGTTTTATATGAACAATTAAAACAACTACACATAATACCCCCCTTAGCAAGGTAG

mRNA sequence

TACCTTGCATGGTCTCTAAAGCGTAGCAAGGCGGTGGACAAGAGCAAGAGGGTGGTTGGGGTGATTGGAAGAGGCCATATGAACGGTGTCATTTATGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGTAGGTAAGAAAGCTGGAGAAGGTAATTCCAATGGCTTTGTTAACAATATCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTATGGGTTTTATATGAACAATTAAAACAACTACACATAATACCCCCCTTAGCAAGGTAG

Coding sequence (CDS)

TACCTTGCATGGTCTCTAAAGCGTAGCAAGGCGGTGGACAAGAGCAAGAGGGTGGTTGGGGTGATTGGAAGAGGCCATATGAACGGTGTCATTTATGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGTAGGTAAGAAAGCTGGAGAAGGTAATTCCAATGGCTTTGTTAACAATATCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTATGGGTTTTATATGAACAATTAAAACAACTACACATAATACCCCCCTTAGCAAGGTAG

Protein sequence

YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFVNNILKSLVRDTIIGVILWVLYEQLKQLHIIPPLAR*

Homology

[Close]

BLAST of MELO3C010054 vs. TrEMBL
Match: A0A0A0L5T2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180280 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-40
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV+KSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDL GKKAGEGNSNGFV
Sbjct: 194 YLAWSLKRSKAVNKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFV 253

Query: 61  NNILKSLVRDTIIGVILWVLYEQLKQLHIIP 92
           +++LK LVRDTIIGVI+WVLYEQLKQLHIIP
Sbjct: 254 SSLLKDLVRDTIIGVIVWVLYEQLKQLHIIP 284

[Close]

BLAST of MELO3C010054 vs. TrEMBL
Match: A0A067JHR6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26159 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.5e-30
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV  SKRVVGVIG+GHMNGVIYA+ SDQGNLRFRDLVGK+     SNGF 
Sbjct: 290 YLAWSLKRSKAVKNSKRVVGVIGKGHMNGVIYALISDQGNLRFRDLVGKRPSSDGSNGFF 349

Query: 61  NNILKSLVRDTIIGVILWVLYEQLK 86
           NN++KSLVRDT+I V+LW LYEQ++
Sbjct: 350 NNLVKSLVRDTVISVLLWQLYEQVR 374

[Close]

BLAST of MELO3C010054 vs. TrEMBL
Match: A0A0D2SS56_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV+K K VVGVIG+GHMNGVIYA+ SDQGNLRFRDL GK   E  SNG+V
Sbjct: 231 YLAWSLKRSKAVNKCKTVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKTPSEAESNGWV 290

Query: 61  NNILKSLVRDTIIGVILWVLYEQLKQLHII 91
             +LKSL RDT+IG++LW LYEQ+K   I+
Sbjct: 291 QRLLKSLARDTLIGILLWALYEQIKSAGIL 320

[Close]

BLAST of MELO3C010054 vs. TrEMBL
Match: A0A0D2Q3D2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV+K K VVGVIG+GHMNGVIYA+ SDQGNLRFRDL GK   E  SNG+V
Sbjct: 291 YLAWSLKRSKAVNKCKTVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKTPSEAESNGWV 350

Query: 61  NNILKSLVRDTIIGVILWVLYEQLKQLHII 91
             +LKSL RDT+IG++LW LYEQ+K   I+
Sbjct: 351 QRLLKSLARDTLIGILLWALYEQIKSAGIL 380

[Close]

BLAST of MELO3C010054 vs. TrEMBL
Match: A0A0D2RQG0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV+K K VVGVIG+GHMNGVIYA+ SDQGNLRFRDL GK   E  SNG+V
Sbjct: 254 YLAWSLKRSKAVNKCKTVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKTPSEAESNGWV 313

Query: 61  NNILKSLVRDTIIGVILWVLYEQLKQLHII 91
             +LKSL RDT+IG++LW LYEQ+K   I+
Sbjct: 314 QRLLKSLARDTLIGILLWALYEQIKSAGIL 343

[Close]

BLAST of MELO3C010054 vs. TAIR10
Match: AT5G52030.2 (AT5G52030.2 TraB family protein)

HSP 1 Score: 117.5 bits (293), Expect = 4.6e-27
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGK----KAGEG-N 60
           YLAWSLKRSKAV+  K VVGVIG+GHMNGVIYA+ SD G+LRFRDLVG+      G G  
Sbjct: 306 YLAWSLKRSKAVNGCKTVVGVIGKGHMNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTT 365

Query: 61  SNGFVNNILKSLVRDTIIGVILWVLYEQ 84
           SNG++  +LKS VRDTIIG +LW LYEQ
Sbjct: 366 SNGWIQKVLKSFVRDTIIGFLLWELYEQ 393

[Close]

BLAST of MELO3C010054 vs. NCBI nr
Match: gi|659077364|ref|XP_008439167.1| (PREDICTED: traB domain-containing protein isoform X2 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 5.3e-41
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV+KSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDL GKKAGEGNSNGFV
Sbjct: 159 YLAWSLKRSKAVNKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFV 218

Query: 61  NNILKSLVRDTIIGVILWVLYEQLKQLHIIP 92
           +++LKSLVRDTIIGVILWVLYEQLKQLHIIP
Sbjct: 219 SSLLKSLVRDTIIGVILWVLYEQLKQLHIIP 249

[Close]

BLAST of MELO3C010054 vs. NCBI nr
Match: gi|659077362|ref|XP_008439166.1| (PREDICTED: traB domain-containing protein isoform X1 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 5.3e-41
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV+KSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDL GKKAGEGNSNGFV
Sbjct: 290 YLAWSLKRSKAVNKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFV 349

Query: 61  NNILKSLVRDTIIGVILWVLYEQLKQLHIIP 92
           +++LKSLVRDTIIGVILWVLYEQLKQLHIIP
Sbjct: 350 SSLLKSLVRDTIIGVILWVLYEQLKQLHIIP 380

[Close]

BLAST of MELO3C010054 vs. NCBI nr
Match: gi|449446067|ref|XP_004140793.1| (PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.4e-40
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV+KSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDL GKKAGEGNSNGFV
Sbjct: 312 YLAWSLKRSKAVNKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFV 371

Query: 61  NNILKSLVRDTIIGVILWVLYEQLKQLHIIP 92
           +++LK LVRDTIIGVI+WVLYEQLKQLHIIP
Sbjct: 372 SSLLKDLVRDTIIGVIVWVLYEQLKQLHIIP 402

[Close]

BLAST of MELO3C010054 vs. NCBI nr
Match: gi|778679467|ref|XP_011651134.1| (PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.4e-40
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV+KSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDL GKKAGEGNSNGFV
Sbjct: 159 YLAWSLKRSKAVNKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFV 218

Query: 61  NNILKSLVRDTIIGVILWVLYEQLKQLHIIP 92
           +++LK LVRDTIIGVI+WVLYEQLKQLHIIP
Sbjct: 219 SSLLKDLVRDTIIGVIVWVLYEQLKQLHIIP 249

[Close]

BLAST of MELO3C010054 vs. NCBI nr
Match: gi|700202207|gb|KGN57340.1| (hypothetical protein Csa_3G180280 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.4e-40
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1   YLAWSLKRSKAVDKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLVGKKAGEGNSNGFV 60
           YLAWSLKRSKAV+KSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDL GKKAGEGNSNGFV
Sbjct: 194 YLAWSLKRSKAVNKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFV 253

Query: 61  NNILKSLVRDTIIGVILWVLYEQLKQLHIIP 92
           +++LK LVRDTIIGVI+WVLYEQLKQLHIIP
Sbjct: 254 SSLLKDLVRDTIIGVIVWVLYEQLKQLHIIP 284

The following BLAST results are available for this feature:

BLAST of MELO3C010054 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5T2_CUCSA	2.4e-40	92.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180280 PE=4 SV=1	[more]
A0A067JHR6_JATCU	6.5e-30	76.47	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26159 PE=4 SV=1	[more]
A0A0D2SS56_GOSRA	1.9e-29	71.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1	[more]
A0A0D2Q3D2_GOSRA	1.9e-29	71.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1	[more]
A0A0D2RQG0_GOSRA	1.9e-29	71.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1	[more]

BLAST of MELO3C010054 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52030.2	4.6e-27	68.18	TraB family protein	[more]

BLAST of MELO3C010054 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077364\|ref\|XP_008439167.1\|	5.3e-41	94.51	PREDICTED: traB domain-containing protein isoform X2 [Cucumis melo]	[more]
gi\|659077362\|ref\|XP_008439166.1\|	5.3e-41	94.51	PREDICTED: traB domain-containing protein isoform X1 [Cucumis melo]	[more]
gi\|449446067\|ref\|XP_004140793.1\|	3.4e-40	92.31	PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus]	[more]
gi\|778679467\|ref\|XP_011651134.1\|	3.4e-40	92.31	PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus]	[more]
gi\|700202207\|gb\|KGN57340.1\|	3.4e-40	92.31	hypothetical protein Csa_3G180280 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010054T1	MELO3C010054T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21530	PHEROMONE SHUTDOWN PROTEIN	coord: 1..85 score: 1.1
None	No IPR available	PANTHER	PTHR21530:SF1	TRAB FAMILY PROTEIN	coord: 1..85 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010054	Silver-seed gourd	carmeB0540
MELO3C010054	Silver-seed gourd	carmeB0946
MELO3C010054	Cucumber (Chinese Long) v3	cucmeB044
MELO3C010054	Watermelon (97103) v2	mewmbB244
MELO3C010054	Wax gourd	mewgoB300
MELO3C010054	Wax gourd	mewgoB315
MELO3C010054	Cucumber (Gy14) v1	cgymeB574
MELO3C010054	Cucurbita maxima (Rimu)	cmameB069
MELO3C010054	Cucurbita maxima (Rimu)	cmameB107
MELO3C010054	Cucurbita moschata (Rifu)	cmomeB061
MELO3C010054	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010054	Wild cucumber (PI 183967)	cpimeB044
MELO3C010054	Cucumber (Chinese Long) v2	cumeB043
MELO3C010054	Watermelon (Charleston Gray)	mewcgB239
MELO3C010054	Watermelon (97103) v1	mewmB263
MELO3C010054	Cucurbita pepo (Zucchini)	cpemeB007
MELO3C010054	Cucurbita pepo (Zucchini)	cpemeB332
MELO3C010054	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010054	Cucumber (Gy14) v2	cgybmeB040