MU55903 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU55903
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Mitochondrial carrier
Location	chr5 : 1262888 .. 1263275 (-)
Sequence length	385

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTCAAACAGAGGAGCTGCTTATCAGGGAATGTCAGATGTATTTAGGCAGACACTGAAGCATGAAGGATATGGTGGTTTCTACAAAGGTTTATCGCCCAACTTACTTAAAGTTGTGCCTGCTGCAAGTATTACATATTTAGTTTACGAAAGGATGAAAAAATGGCTGGAACTTGATTAGGCAAGTCGGTGTATACATGAAATGGTATTATGGTTAGAGGATATTGACGAAAAAGATTAGTACCCAAAAAAGGAAAAAGAAAAAAAGGAAAAAAAAAGGAAACAAAAAGAGAGAGAGAGAGAGAGAGAAGAAATCATAGTTGGCAGATGCCAATTTGCTGATTGAGAATTCGAGGTACATTATTTGTGGTCAGGAGATGTAACCTCC

Library


Library category	ESTs
melon 46d library	1

Homology

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BLAST of MU55903 vs. Swiss-Prot
Match: YBT5_SCHPO (Uncharacterized mitochondrial carrier C12D12.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC12D12.05c PE=3 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 2


Query: 14  AAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 73
           A Y G  D F +T K+EG+ G YKGLSPNLLKV P+ +I+YLVYE  KKWL L+
Sbjct: 373 ATYDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKKWLGLE 426

Query: 74   133
           
Sbjct: 433  426

Query: 134  176
           
Sbjct: 493  426

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BLAST of MU55903 vs. Swiss-Prot
Match: CMC1_YEASX (Calcium-binding mitochondrial carrier SAL1 OS=Saccharomyces cerevisiae GN=SAL1 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-09
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 2


Query: 20  YQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 79
           Y G  DV  +TL+ EGY G +KGL P L KV PA SI+YL YE +KK++ L+
Sbjct: 494 YNGFKDVLLKTLEREGYQGLFKGLVPTLAKVCPAVSISYLCYENLKKFMNLE 545

Query: 80   139
           
Sbjct: 554  545

Query: 140  176
           
Sbjct: 614  545

[Close]

BLAST of MU55903 vs. Swiss-Prot
Match: ADNT1_ARATH (Mitochondrial adenine nucleotide transporter ADNT1 OS=Arabidopsis thaliana GN=ADNT1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-09
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           S     Y GM D FR+T++HEG+G  YKGL PN +KVVP+ +I ++ YE +K  L ++
Sbjct: 290 STASLEYTGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDVLGVE 347

Query: 62   121
           
Sbjct: 350  347

Query: 122  176
           
Sbjct: 410  347

[Close]

BLAST of MU55903 vs. Swiss-Prot
Match: MFTC_MOUSE (Mitochondrial folate transporter/carrier OS=Mus musculus GN=Slc25a32 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 2


Query: 17  AYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWL 76
           +Y G++DV  +T + EG GGFYKG++PNL++V PA  IT++VYE +  +L
Sbjct: 258 SYGGVTDVITKTWRKEGIGGFYKGIAPNLIRVTPACCITFVVYENVSHFL 307

Query: 77   136
           
Sbjct: 318  307

Query: 137  167
           
Sbjct: 378  307

[Close]

BLAST of MU55903 vs. Swiss-Prot
Match: MFTC_MACFA (Mitochondrial folate transporter/carrier OS=Macaca fascicularis GN=SLC25A32 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-08
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 2


Query: 20  YQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWL 79
           Y G+ DV  +T + EG GGFYKG++PNL++V PA  IT++VYE +  +L
Sbjct: 259 YSGVIDVITKTWRKEGIGGFYKGIAPNLIRVTPACCITFVVYENVSHFL 307

Query: 80   139
           
Sbjct: 319  307

Query: 140  167
           
Sbjct: 379  307

[Close]

BLAST of MU55903 vs. TrEMBL
Match: A0A0A0KK25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434310 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-22
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           SN+GAAYQGMSDVFRQTLK+EGY GFYKGL PNLLKVVPAASITYLVYERMKKWLELD
Sbjct: 439 SNKGAAYQGMSDVFRQTLKNEGYSGFYKGLLPNLLKVVPAASITYLVYERMKKWLELD 496

Query: 62   121
           
Sbjct: 499  496

Query: 122  176
           
Sbjct: 559  496

[Close]

BLAST of MU55903 vs. TrEMBL
Match: A0A068TPQ3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022337001 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 2


Query: 5   NRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLEL 64
           N  AAY+GMSDVFR+T+KHEG+ GFYKGL PNLLKVVPAASITYLVYE MKK L+L
Sbjct: 447 NSDAAYKGMSDVFRRTIKHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 502

Query: 65   124
           
Sbjct: 507  502

Query: 125  173
           
Sbjct: 567  502

[Close]

BLAST of MU55903 vs. TrEMBL
Match: D7SVF7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00890 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           +N+  AY+GMSDVFR+T +HEG+ GFYKGL PNLLKVVP+ASITYLVYE MKK LELD
Sbjct: 432 TNKADAYKGMSDVFRKTFQHEGFRGFYKGLFPNLLKVVPSASITYLVYETMKKSLELD 489

Query: 62   121
           
Sbjct: 492  489

Query: 122  176
           
Sbjct: 552  489

[Close]

BLAST of MU55903 vs. TrEMBL
Match: A5BED0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022552 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           +N  A+Y GMSDVFR+TL+HEG+ GFYKGL PNLLKVVP+ASITYLVYE MKK L+LD
Sbjct: 439 TNTDASYNGMSDVFRRTLQHEGFRGFYKGLFPNLLKVVPSASITYLVYETMKKSLDLD 496

Query: 62   121
           
Sbjct: 499  496

Query: 122  176
           
Sbjct: 559  496

[Close]

BLAST of MU55903 vs. TrEMBL
Match: F6GT50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g00030 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           +N  A+Y GMSDVFR+TL+HEG+ GFYKGL PNLLKVVP+ASITYLVYE MKK L+LD
Sbjct: 491 TNTDASYNGMSDVFRRTLQHEGFRGFYKGLFPNLLKVVPSASITYLVYETMKKSLDLD 548

Query: 62   121
           
Sbjct: 551  548

Query: 122  176
           
Sbjct: 611  548

[Close]

BLAST of MU55903 vs. TAIR10
Match: AT5G51050.1 (AT5G51050.1 Mitochondrial substrate carrier family protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-14
Identity = 38/53 (71.70%), Postives = 39/53 (73.58%), Query Frame = 2


Query: 17  AYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 76
           A   MS VFR+T+  EGY   YKGL PNLLKVVPAASITY+VYE MKK LELD
Sbjct: 435 ARTSMSGVFRRTISEEGYRALYKGLLPNLLKVVPAASITYMVYEAMKKSLELD 487

Query: 77   136
           
Sbjct: 495  487

Query: 137  176
           
Sbjct: 555  487

[Close]

BLAST of MU55903 vs. TAIR10
Match: AT5G07320.1 (AT5G07320.1 Mitochondrial substrate carrier family protein)

HSP 1 Score: 67.4 bits (163), Expect = 7.3e-12
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 2


Query: 29  MSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 88
           M   F  T+K EG  GFY+GL PNLLKVVPAASITY+VYE MKK + LD
Sbjct: 431 MKQEFMNTMKGEGLRGFYRGLLPNLLKVVPAASITYIVYEAMKKNMALD 479

Query: 89   148
           
Sbjct: 491  479

Query: 149  176
           
Sbjct: 551  479

[Close]

BLAST of MU55903 vs. TAIR10
Match: AT4G01100.2 (AT4G01100.2 adenine nucleotide transporter 1)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           S     Y GM D FR+T++HEG+G  YKGL PN +KVVP+ +I ++ YE +K  L ++
Sbjct: 304 STASLEYTGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDVLGVE 361

Query: 62   121
           
Sbjct: 364  361

Query: 122  176
           
Sbjct: 424  361

[Close]

BLAST of MU55903 vs. TAIR10
Match: AT5G61810.1 (AT5G61810.1 Mitochondrial substrate carrier family protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-10
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 2


Query: 29  MSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 88
           M   F +TL+ EG  GFY+G+ PN  KV+P+ASI+YLVYE MKK L LD
Sbjct: 430 MGQEFLKTLRGEGLKGFYRGIFPNFFKVIPSASISYLVYEAMKKNLALD 478

Query: 89   148
           
Sbjct: 490  478

Query: 149  176
           
Sbjct: 550  478

[Close]

BLAST of MU55903 vs. TAIR10
Match: AT5G66380.1 (AT5G66380.1 folate transporter 1)

HSP 1 Score: 55.1 bits (131), Expect = 3.8e-08
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 2


Query: 38  VFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLE 97
           V R+T ++EG  GFY+GL+ NLLK VPA+SIT++VYE + K L+
Sbjct: 258 VIRETARYEGLRGFYRGLTANLLKNVPASSITFIVYENVLKLLK 301

Query: 98   157
           
Sbjct: 318  301

Query: 158  170
           
Sbjct: 378  301

[Close]

BLAST of MU55903 vs. NCBI nr
Match: gi|659097527|ref|XP_008449675.1| (PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-24
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           SNRGAAYQGMSDVFRQTLKHEGYGGFYKGL PNLLKVVPAASITYLVYERMKKWLELD
Sbjct: 439 SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLLPNLLKVVPAASITYLVYERMKKWLELD 496

Query: 62   121
           
Sbjct: 499  496

Query: 122  176
           
Sbjct: 559  496

[Close]

BLAST of MU55903 vs. NCBI nr
Match: gi|778716964|ref|XP_011657624.1| (PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           SN+GAAYQGMSDVFRQTLK+EGY GFYKGL PNLLKVVPAASITYLVYERMKKWLELD
Sbjct: 439 SNKGAAYQGMSDVFRQTLKNEGYSGFYKGLLPNLLKVVPAASITYLVYERMKKWLELD 496

Query: 62   121
           
Sbjct: 499  496

Query: 122  176
           
Sbjct: 559  496

[Close]

BLAST of MU55903 vs. NCBI nr
Match: gi|778716961|ref|XP_004140204.2| (PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           SN+GAAYQGMSDVFRQTLK+EGY GFYKGL PNLLKVVPAASITYLVYERMKKWLELD
Sbjct: 499 SNKGAAYQGMSDVFRQTLKNEGYSGFYKGLLPNLLKVVPAASITYLVYERMKKWLELD 556

Query: 62   121
           
Sbjct: 559  556

Query: 122  176
           
Sbjct: 619  556

[Close]

BLAST of MU55903 vs. NCBI nr
Match: gi|698584900|ref|XP_009778498.1| (PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-2-B-like [Nicotiana sylvestris])

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           +N  AAY+GMSDVFR+TL+HEG+ GFYKGL PNLLKVVPAASITYLVYE MKK LELD
Sbjct: 432 TNADAAYKGMSDVFRRTLQHEGFRGFYKGLFPNLLKVVPAASITYLVYESMKKSLELD 489

Query: 62   121
           
Sbjct: 492  489

Query: 122  176
           
Sbjct: 552  489

[Close]

BLAST of MU55903 vs. NCBI nr
Match: gi|697191528|ref|XP_009604830.1| (PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-2-B-like [Nicotiana tomentosiformis])

HSP 1 Score: 95.5 bits (236), Expect = 7.1e-17
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 2


Query: 2   SNRGAAYQGMSDVFRQTLKHEGYGGFYKGLSPNLLKVVPAASITYLVYERMKKWLELD 61
           +N  AAY+GMSDVFR+TL+HEG  GFYKGL PNLLKVVPAASITYLVYE MKK LELD
Sbjct: 432 TNADAAYKGMSDVFRRTLQHEGLRGFYKGLFPNLLKVVPAASITYLVYESMKKSLELD 489

Query: 62   121
           
Sbjct: 492  489

Query: 122  176
           
Sbjct: 552  489

The following BLAST results are available for this feature:

BLAST of MU55903 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YBT5_SCHPO	2.4e-12	61.11	Uncharacterized mitochondrial carrier C12D12.05c OS=Schizosaccharomyces pombe (s...	[more]
CMC1_YEASX	3.2e-09	53.85	Calcium-binding mitochondrial carrier SAL1 OS=Saccharomyces cerevisiae GN=SAL1 P...	[more]
ADNT1_ARATH	5.5e-09	46.55	Mitochondrial adenine nucleotide transporter ADNT1 OS=Arabidopsis thaliana GN=AD...	[more]
MFTC_MOUSE	1.2e-08	50.00	Mitochondrial folate transporter/carrier OS=Mus musculus GN=Slc25a32 PE=1 SV=1	[more]
MFTC_MACFA	2.1e-08	51.02	Mitochondrial folate transporter/carrier OS=Macaca fascicularis GN=SLC25A32 PE=2...	[more]

BLAST of MU55903 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK25_CUCSA	1.8e-22	93.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434310 PE=3 SV=1	[more]
A0A068TPQ3_COFCA	1.9e-16	80.36	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022337001 PE=3 SV=1	[more]
D7SVF7_VITVI	2.5e-16	75.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00890 PE=3 SV=...	[more]
A5BED0_VITVI	3.2e-16	75.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022552 PE=3 SV=1	[more]
F6GT50_VITVI	3.2e-16	75.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g00030 PE=3 SV=...	[more]

BLAST of MU55903 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51050.1	2.1e-14	71.70	Mitochondrial substrate carrier family protein	[more]
AT5G07320.1	7.3e-12	67.35	Mitochondrial substrate carrier family protein	[more]
AT4G01100.2	3.1e-10	46.55	adenine nucleotide transporter 1	[more]
AT5G61810.1	4.0e-10	59.18	Mitochondrial substrate carrier family protein	[more]
AT5G66380.1	3.8e-08	56.82	folate transporter 1	[more]

BLAST of MU55903 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097527\|ref\|XP_008449675.1\|	2.7e-24	98.28	PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like [Cucumis m...	[more]
gi\|778716964\|ref\|XP_011657624.1\|	1.9e-22	93.10	PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X2...	[more]
gi\|778716961\|ref\|XP_004140204.2\|	1.9e-22	93.10	PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1...	[more]
gi\|698584900\|ref\|XP_009778498.1\|	2.4e-17	81.03	PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-2-B-like [Nicotia...	[more]
gi\|697191528\|ref\|XP_009604830.1\|	7.1e-17	81.03	PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-2-B-like [Nicotia...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR018108	Mitochondrial_sb/sol_carrier
IPR023395	Mt_carrier_dom_sf

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C014570	MELO3C014570	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
46D23E01	46D23E01	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018108	Mitochondrial substrate/solute carrier	PFAM	PF00153	Mito_carr	coord: 4..56 score: 5.8
IPR018108	Mitochondrial substrate/solute carrier	PROFILE	PS50920	SOLCAR	coord: 1..55 score: 15
IPR023395	Mitochondrial carrier domain	GENE3D	G3DSA:1.50.40.10		coord: 5..56 score: 1.2
IPR023395	Mitochondrial carrier domain	unknown	SSF103506	Mitochondrial carrier	coord: 4..51 score: 5.49
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 6..56 score: 3.1
None	No IPR available	PANTHER	PTHR24089:SF400	SUBFAMILY NOT NAMED	coord: 6..56 score: 3.1