MU59227 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU59227
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cleavage and polyadenylation specificity factor subunit 3-II
Location	chr11 : 6841024 .. 6841909 (+)
Sequence length	887

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATCTTGTGAAATTCCTTAGTCCCAAGCATGTGATTCTTGTACATGGAGAGAAACCTAAAATGGCTGTTTTAAAGGAGAGGATTCATTCCGAACTGGGAATCCCATGTCATGATCCAGCAAATAATGAAACCGTATCCATTTCTTCAACACTTTCTATCAAAGCAGAAGCCTCGAGCATGTTTATTCAGAGTTGTTCAACTCCTAATTTTAAGTTCTTAAAAAGAAACTTGATTGATAAGATTGATCCTGATTTGAAAGATTTAAGTTACAAAGCAGTAAGGACTTCAAACATGCTTATACGTGAATGCTCAAATCCCCATTTCAAGCATTTGAATAGAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAATGGTAAAAAAAACCAAGGCATTACATCAGGATGAACTATTGCTACTCTTGGGAGAACAAGAGCATGAGGTCAGGTTTGCTCATTGTAGACCCATATATTTTGGTAGCTTAGATGAGATCCATGTTAAGGATAGCTTATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTTTAAGCTTTCAACCGAACTATCAGACAGGAATGTTCAAAATCTTGGGGAGTATCTTCAAGTTGAATCAATTACACTGTCCATTTGCTCAAAGGAGAATTGCCCTTACAGAACTACAAATAGAATTGAAAATGAATCCACTGCTATGGTATTTTGTTGCTGTAGTTGGCTAGTTGCAGTTGAAATCCTTGCATGGAAAATCATTTCTATCTTGGAGAAACATGATCTCGGTTCAACATAAAGGGGAGCCTATTATTTATGGGTTTCCTTACATAAATGCACATG

Library


Library category	ESTs
melon CI library	1

Homology

[Close]

BLAST of MU59227 vs. Swiss-Prot
Match: CPS3B_ARATH (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-21
Identity = 50/71 (70.42%), Postives = 55/71 (77.46%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           L KFLSPK+V+LVHGEKP M +LKE+I SEL IPC  PAN ETVS +ST  IKA AS MF
Sbjct: 401 LTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMF 460

Query: 63  IQSCSTPNFKF 122
           ++SCS PNFKF
Sbjct: 461 LKSCSNPNFKF 471

Query: 123  182
           
Sbjct: 521  471

Query: 183  216
           
Sbjct: 581  471

HSP 2 Score: 50.4 bits (119), Expect = 3.8e-05
Identity = 32/106 (30.19%), Postives = 48/106 (45.28%), Query Frame = 1


Query: 502 VRFAHCRPIYFGSLDEIHVKDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITL 561
           V  AHC P+      E    D +        QLS K+   +S   +      LQV S   
Sbjct: 516 VSLAHCCPVKVKGESEDDDVDLIK-------QLSAKILKTVSGAQIHESENCLQVASFKG 575

Query: 562 SICSKENCPYRTTNRIENESTAMVFCCCSWLVAVEILAWKIISILE 621
           S+C K+ C +R++    + S+  VF CC+W +A   L W+II+ ++
Sbjct: 576 SLCLKDKCMHRSS----SSSSEAVFLCCNWSIADLELGWEIINAIK 610

Query: 622  681
           
Sbjct: 636  610

Query: 682  741
           
Sbjct: 696  610

Query: 742  801
           
Sbjct: 756  610

Query: 802  820
           
Sbjct: 816  610

[Close]

BLAST of MU59227 vs. Swiss-Prot
Match: INT11_DICDI (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.9e-07
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEAS 62
           L+K  +P++VILVHGEK KM  L ++I  E+G+ C+ PAN  T+ I +  SI  + S
Sbjct: 412 LIKMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTIIIDTMKSIPIDIS 468

Query: 63   122
           
Sbjct: 472  468

Query: 123  174
           
Sbjct: 532  468

[Close]

BLAST of MU59227 vs. TrEMBL
Match: Q6E435_CUCME (ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.9e-68
Identity = 136/161 (84.47%), Postives = 139/161 (86.34%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF
Sbjct: 430 LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 489

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 122
           IQSCSTPNFKFLKRN            SYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS
Sbjct: 490 IQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 549

Query: 123 SLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLG 182
           SLS GPELQVSDDRVNEGILVMENGKK + +     +  LG
Sbjct: 550 SLSGGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLG 590

Query: 183  242
           
Sbjct: 610  590

Query: 243  302
           
Sbjct: 670  590

Query: 303  362
           
Sbjct: 730  590

Query: 363  422
           
Sbjct: 790  590

Query: 423  482
           
Sbjct: 850  590

Query: 483  486
           
Sbjct: 910  590

[Close]

BLAST of MU59227 vs. TrEMBL
Match: Q6E435_CUCME (ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.7e-57
Identity = 116/134 (86.57%), Postives = 116/134 (86.57%), Query Frame = 1


Query: 439 KKTKAXXXXXXXXXXXXXXXXVRFAHCRPIYFGSLDEIHVKDSLSRKSLWLSQLSFKLST 498
           KKTKA                VRFAHCRPIYFGSLDEIHV DSLSRKSLWLSQLSFKLST
Sbjct: 575 KKTKALHQDELLLLLGEQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLST 634

Query: 499 ELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESTAMVFCCCSWLVAVEILAW 558
           ELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESTAMVFCCCSWLVA EILAW
Sbjct: 635 ELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESTAMVFCCCSWLVADEILAW 694

Query: 559 KIISILEKHDLGST 618
           KIISILEKHDLGST
Sbjct: 695 KIISILEKHDLGST 708

Query: 619  678
           
Sbjct: 755  708

Query: 679  738
           
Sbjct: 815  708

Query: 739  798
           
Sbjct: 875  708

Query: 799  841
           
Sbjct: 935  708

HSP 2 Score: 259.6 bits (662), Expect = 4.6e-66
Identity = 133/162 (82.10%), Postives = 138/162 (85.19%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS+KAEASSMF
Sbjct: 401 LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMF 460

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 122
           IQSCSTPNFKFLKRN            SYKA RTSNMLIRECSNPHFKHL RNLDAKFDS
Sbjct: 461 IQSCSTPNFKFLKRN---LIDPDLKDLSYKAERTSNMLIRECSNPHFKHLKRNLDAKFDS 520

Query: 123 SLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLGR 182
           SLSCGP LQVSDDRVNEGILVMENGKK + +     +  LG+
Sbjct: 521 SLSCGPALQVSDDRVNEGILVMENGKKTKALHQDELLLLLGQ 559

Query: 183  242
           
Sbjct: 581  559

Query: 243  302
           
Sbjct: 641  559

Query: 303  362
           
Sbjct: 701  559

Query: 363  422
           
Sbjct: 761  559

Query: 423  482
           
Sbjct: 821  559

Query: 483  489
           
Sbjct: 881  559

[Close]

BLAST of MU59227 vs. TrEMBL
Match: A0A0A0LQW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435430 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 9.6e-56
Identity = 113/134 (84.33%), Postives = 115/134 (85.82%), Query Frame = 1


Query: 439 KKTKAXXXXXXXXXXXXXXXXVRFAHCRPIYFGSLDEIHVKDSLSRKSLWLSQLSFKLST 498
           KKTKA                VRFAHCRPIYFGSLDEIHV DSLSRKSLWLSQLSFKLST
Sbjct: 543 KKTKALHQDELLLLLGQQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLST 602

Query: 499 ELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESTAMVFCCCSWLVAVEILAW 558
           ELSDRNVQNLGEYLQVESITLSICSKENCPYRT +RI+NESTAMVFCCCSWLVA EILAW
Sbjct: 603 ELSDRNVQNLGEYLQVESITLSICSKENCPYRTIDRIKNESTAMVFCCCSWLVADEILAW 662

Query: 559 KIISILEKHDLGST 618
           KIISILEKHDLGST
Sbjct: 663 KIISILEKHDLGST 676

Query: 619  678
           
Sbjct: 723  676

Query: 679  738
           
Sbjct: 783  676

Query: 739  798
           
Sbjct: 843  676

Query: 799  841
           
Sbjct: 903  676

HSP 2 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 76/164 (46.34%), Postives = 90/164 (54.88%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPKH ILVHGEKPKMA LKERI SELGI C+ PANN+TV+I +T  +KA+AS  F
Sbjct: 400 LVKFLSPKHAILVHGEKPKMATLKERIQSELGIQCYCPANNDTVTIPTTHYVKADASDAF 459

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 122
           I+SC  PNFKF K +            SY     S  +                      
Sbjct: 460 IKSCLNPNFKFSKSS--------SVDKSYSGSNDSKAI---------------------- 519

Query: 123 SLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLGRTR 182
                P LQVSD+RV EGILV+E GKK + I     +  LG  +
Sbjct: 520 -----PGLQVSDERVAEGILVVEKGKKAKVIHQDELLHMLGENK 528

Query: 183  242
           
Sbjct: 580  528

Query: 243  302
           
Sbjct: 640  528

Query: 303  362
           
Sbjct: 700  528

Query: 363  422
           
Sbjct: 760  528

Query: 423  482
           
Sbjct: 820  528

Query: 483  495
           
Sbjct: 880  528

[Close]

BLAST of MU59227 vs. TrEMBL
Match: A0A061E8Z1_THECC (Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma cacao GN=TCM_011055 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 58/118 (49.15%), Postives = 79/118 (66.95%), Query Frame = 1


Query: 502 VRFAHCRPIYFGSLDEIHVKDSLSRKSLW--------LSQLSFKLSTELSDRNVQNLGEY 561
           V+FA+C P+    L++   +D  S   L         +S LS KLS ELSD N+Q+LGE 
Sbjct: 531 VQFAYCFPMRTERLEKTRSEDLPSADDLLCGLDKCTLISLLSTKLSNELSDGNIQDLGEQ 590

Query: 562 LQVESITLSICSKENCPYRTTNRIENESTAMVFCCCSWLVAVEILAWKIISILEKHDL 621
           LQVES  LSIC K+NCP+R ++ ++N+S  +VF CCSW VA E+LAWKIISI++ + L
Sbjct: 591 LQVESFCLSICLKDNCPHRISDSLQNDS-EVVFFCCSWSVADEMLAWKIISIMKNYTL 647

Query: 622  681
           
Sbjct: 651  647

Query: 682  741
           
Sbjct: 711  647

Query: 742  801
           
Sbjct: 771  647

Query: 802  832
           
Sbjct: 831  647

HSP 2 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 71/162 (43.83%), Postives = 95/162 (58.64%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPK VILVHGEKPKMA LKERI SE+GI C+ PAN++TV I S++ +KA AS MF
Sbjct: 122 LVKFLSPKSVILVHGEKPKMASLKERIESEMGIQCYVPANSDTVCIPSSVFVKAGASEMF 181

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 122
           I+SC +PNFKFL R+               +  TS++++   ++                
Sbjct: 182 IRSCLSPNFKFLNRS---------------SEDTSDLILHSTNST--------------- 241

Query: 123 SLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLGR 182
                 +LQV+D+RV  GILVME  KK + +     +  LG+
Sbjct: 242 -----SQLQVTDERVTNGILVMEKCKKARVVHQDELLLMLGK 248

Query: 183  242
           
Sbjct: 302  248

Query: 243  302
           
Sbjct: 362  248

Query: 303  362
           
Sbjct: 422  248

Query: 363  422
           
Sbjct: 482  248

Query: 423  482
           
Sbjct: 542  248

Query: 483  489
           
Sbjct: 602  248

[Close]

BLAST of MU59227 vs. TrEMBL
Match: A0A067KT13_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04761 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.3e-16
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1


Query: 502 VRFAHCRPIYFGSLD-------EIHVKDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYL 561
           +RFA+C P+Y  +LD         H    LS K  WL QL  +L+T+   +  Q LGE+L
Sbjct: 253 IRFAYCCPVYVENLDVARRELTTAHEVLDLSEKCCWLQQLFTELTTDFPGKCFQILGEHL 312

Query: 562 QVESITLSICSKENCPYRTTNRIENESTAMVFCCCSWLVAVEILAWKIISILEK 621
           ++ES  +SIC K+ CPYR       E +  +F CCSW VA E  AW+II+ +EK
Sbjct: 313 EMESFHVSICMKDECPYRVMIDSPREKSTAMFFCCSWSVADEKFAWEIITTMEK 366

Query: 622  681
           
Sbjct: 373  366

Query: 682  741
           
Sbjct: 433  366

Query: 742  801
           
Sbjct: 493  366

Query: 802  823
           
Sbjct: 553  366

HSP 2 Score: 117.5 bits (293), Expect = 2.8e-23
Identity = 77/165 (46.67%), Postives = 89/165 (53.94%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPKH ILVHGEKPKMA LKERI SELGI C+ PANNETV+I ST  +KA+AS  F
Sbjct: 178 LVKFLSPKHAILVHGEKPKMATLKERIQSELGIQCYCPANNETVTIPSTHYVKADASGTF 237

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLD-AKFD 122
           I+SC  PNFKF                              CS+    +L+ N   A   
Sbjct: 238 IRSCLNPNFKF----------------------------STCSSTDKSYLDSNKSKAVSR 297

Query: 123 SSLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLGRTR 182
            S        VSDDR  EGILV+E GKK + I     +  LG  +
Sbjct: 298 LS--------VSDDRATEGILVVEKGKKAKVIHQDEFLHMLGEKK 306

Query: 183  242
           
Sbjct: 358  306

Query: 243  302
           
Sbjct: 418  306

Query: 303  362
           
Sbjct: 478  306

Query: 363  422
           
Sbjct: 538  306

Query: 423  482
           
Sbjct: 598  306

Query: 483  495
           
Sbjct: 658  306

[Close]

BLAST of MU59227 vs. TAIR10
Match: AT2G01730.1 (AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 50/71 (70.42%), Postives = 55/71 (77.46%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           L KFLSPK+V+LVHGEKP M +LKE+I SEL IPC  PAN ETVS +ST  IKA AS MF
Sbjct: 401 LTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMF 460

Query: 63  IQSCSTPNFKF 122
           ++SCS PNFKF
Sbjct: 461 LKSCSNPNFKF 471

Query: 123  182
           
Sbjct: 521  471

Query: 183  216
           
Sbjct: 581  471

HSP 2 Score: 50.4 bits (119), Expect = 2.1e-06
Identity = 32/106 (30.19%), Postives = 48/106 (45.28%), Query Frame = 1


Query: 502 VRFAHCRPIYFGSLDEIHVKDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITL 561
           V  AHC P+      E    D +        QLS K+   +S   +      LQV S   
Sbjct: 516 VSLAHCCPVKVKGESEDDDVDLIK-------QLSAKILKTVSGAQIHESENCLQVASFKG 575

Query: 562 SICSKENCPYRTTNRIENESTAMVFCCCSWLVAVEILAWKIISILE 621
           S+C K+ C +R++    + S+  VF CC+W +A   L W+II+ ++
Sbjct: 576 SLCLKDKCMHRSS----SSSSEAVFLCCNWSIADLELGWEIINAIK 610

Query: 622  681
           
Sbjct: 636  610

Query: 682  741
           
Sbjct: 696  610

Query: 742  801
           
Sbjct: 756  610

Query: 802  820
           
Sbjct: 816  610

[Close]

BLAST of MU59227 vs. NCBI nr
Match: gi|659118488|ref|XP_008459147.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 6.3e-69
Identity = 137/161 (85.09%), Postives = 140/161 (86.96%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF
Sbjct: 401 LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 460

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 122
           IQSCSTPNFKFLKRN            SYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS
Sbjct: 461 IQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 520

Query: 123 SLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLG 182
           SLSCGPELQVSDDRVNEGILVMENGKK + +     +  LG
Sbjct: 521 SLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLG 561

Query: 183  242
           
Sbjct: 581  561

Query: 243  302
           
Sbjct: 641  561

Query: 303  362
           
Sbjct: 701  561

Query: 363  422
           
Sbjct: 761  561

Query: 423  482
           
Sbjct: 821  561

Query: 483  486
           
Sbjct: 881  561

[Close]

BLAST of MU59227 vs. NCBI nr
Match: gi|46360445|gb|AAS80153.1| (ACT11D09.9 [Cucumis melo])

HSP 1 Score: 265.0 bits (676), Expect = 1.6e-67
Identity = 136/161 (84.47%), Postives = 139/161 (86.34%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF
Sbjct: 430 LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 489

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 122
           IQSCSTPNFKFLKRN            SYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS
Sbjct: 490 IQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 549

Query: 123 SLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLG 182
           SLS GPELQVSDDRVNEGILVMENGKK + +     +  LG
Sbjct: 550 SLSGGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLG 590

Query: 183  242
           
Sbjct: 610  590

Query: 243  302
           
Sbjct: 670  590

Query: 303  362
           
Sbjct: 730  590

Query: 363  422
           
Sbjct: 790  590

Query: 423  482
           
Sbjct: 850  590

Query: 483  486
           
Sbjct: 910  590

[Close]

BLAST of MU59227 vs. NCBI nr
Match: gi|778673818|ref|XP_011650067.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 1.1e-65
Identity = 133/162 (82.10%), Postives = 138/162 (85.19%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS+KAEASSMF
Sbjct: 401 LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMF 460

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 122
           IQSCSTPNFKFLKRN            SYKA RTSNMLIRECSNPHFKHL RNLDAKFDS
Sbjct: 461 IQSCSTPNFKFLKRN---LIDPDLKDLSYKAERTSNMLIRECSNPHFKHLKRNLDAKFDS 520

Query: 123 SLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLGR 182
           SLSCGP LQVSDDRVNEGILVMENGKK + +     +  LG+
Sbjct: 521 SLSCGPALQVSDDRVNEGILVMENGKKTKALHQDELLLLLGQ 559

Query: 183  242
           
Sbjct: 581  559

Query: 243  302
           
Sbjct: 641  559

Query: 303  362
           
Sbjct: 701  559

Query: 363  422
           
Sbjct: 761  559

Query: 423  482
           
Sbjct: 821  559

Query: 483  489
           
Sbjct: 881  559

[Close]

BLAST of MU59227 vs. NCBI nr
Match: gi|590696828|ref|XP_007045271.1| (Cleavage and polyadenylation specificity factor 73 kDa subunit-II [Theobroma cacao])

HSP 1 Score: 122.9 bits (307), Expect = 9.6e-25
Identity = 76/164 (46.34%), Postives = 90/164 (54.88%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPKH ILVHGEKPKMA LKERI SELGI C+ PANN+TV+I +T  +KA+AS  F
Sbjct: 400 LVKFLSPKHAILVHGEKPKMATLKERIQSELGIQCYCPANNDTVTIPTTHYVKADASDAF 459

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 122
           I+SC  PNFKF K +            SY     S  +                      
Sbjct: 460 IKSCLNPNFKFSKSS--------SVDKSYSGSNDSKAI---------------------- 519

Query: 123 SLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLGRTR 182
                P LQVSD+RV EGILV+E GKK + I     +  LG  +
Sbjct: 520 -----PGLQVSDERVAEGILVVEKGKKAKVIHQDELLHMLGENK 528

Query: 183  242
           
Sbjct: 580  528

Query: 243  302
           
Sbjct: 640  528

Query: 303  362
           
Sbjct: 700  528

Query: 363  422
           
Sbjct: 760  528

Query: 423  482
           
Sbjct: 820  528

Query: 483  495
           
Sbjct: 880  528

[Close]

BLAST of MU59227 vs. NCBI nr
Match: gi|643730686|gb|KDP38118.1| (hypothetical protein JCGZ_04761 [Jatropha curcas])

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-23
Identity = 71/162 (43.83%), Postives = 95/162 (58.64%), Query Frame = 3


Query: 3   LVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMF 62
           LVKFLSPK VILVHGEKPKMA LKERI SE+GI C+ PAN++TV I S++ +KA AS MF
Sbjct: 122 LVKFLSPKSVILVHGEKPKMASLKERIESEMGIQCYVPANSDTVCIPSSVFVKAGASEMF 181

Query: 63  IQSCSTPNFKFLKRNXXXXXXXXXXXXSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDS 122
           I+SC +PNFKFL R+               +  TS++++   ++                
Sbjct: 182 IRSCLSPNFKFLNRS---------------SEDTSDLILHSTNST--------------- 241

Query: 123 SLSCGPELQVSDDRVNEGILVMENGKKNQGITSG*TIATLGR 182
                 +LQV+D+RV  GILVME  KK + +     +  LG+
Sbjct: 242 -----SQLQVTDERVTNGILVMEKCKKARVVHQDELLLMLGK 248

Query: 183  242
           
Sbjct: 302  248

Query: 243  302
           
Sbjct: 362  248

Query: 303  362
           
Sbjct: 422  248

Query: 363  422
           
Sbjct: 482  248

Query: 423  482
           
Sbjct: 542  248

Query: 483  489
           
Sbjct: 602  248

The following BLAST results are available for this feature:

BLAST of MU59227 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CPS3B_ARATH	2.2e-21	70.42	Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thal...	[more]
INT11_DICDI	6.9e-07	45.61	Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3...	[more]

BLAST of MU59227 vs. TrEMBL


Match Name	E-value	Identity	Description
Q6E435_CUCME	4.9e-68	84.47	ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 PE=4 SV=1	[more]
Q6E435_CUCME	1.7e-57	86.57	ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 PE=4 SV=1	[more]
A0A0A0LQW3_CUCSA	9.6e-56	84.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435430 PE=4 SV=1	[more]
A0A061E8Z1_THECC	1.1e-19	49.15	Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma c...	[more]
A0A067KT13_JATCU	4.3e-16	42.11	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04761 PE=4 SV=1	[more]

BLAST of MU59227 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01730.1	1.2e-22	70.42	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[more]

BLAST of MU59227 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118488\|ref\|XP_008459147.1\|	6.3e-69	85.09	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ...	[more]
gi\|46360445\|gb\|AAS80153.1\|	1.6e-67	84.47	ACT11D09.9 [Cucumis melo]	[more]
gi\|778673818\|ref\|XP_011650067.1\|	1.1e-65	82.10	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ...	[more]
gi\|590696828\|ref\|XP_007045271.1\|	9.6e-25	46.34	Cleavage and polyadenylation specificity factor 73 kDa subunit-II [Theobroma cac...	[more]
gi\|643730686\|gb\|KDP38118.1\|	4.0e-23	43.83	hypothetical protein JCGZ_04761 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001279	Metallo-B-lactamas
IPR011108	RMMBL

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C021825	MELO3C021825	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
CI63A07	CI63A07	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001279	Metallo-beta-lactamase	unknown	SSF56281	Metallo-hydrolase/oxidoreductase	coord: 2..48 score: 3.1
IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	PFAM	PF07521	RMMBL	coord: 2..37 score: 2.
None	No IPR available	PANTHER	PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	coord: 2..81 score: 1.3
None	No IPR available	PANTHER	PTHR11203:SF37	INTEGRATOR COMPLEX SUBUNIT 11	coord: 2..81 score: 1.3