MU60654 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU60654
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Proteasome subunit beta type
Location	chr3 : 25807519 .. 25808792 (+)
Sequence length	296

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGTCGATCTGGCTCGGCTGCTGATTCTCAAATTGTTTCTGATTATGTGCGCCACTTCCTTCATCAACACACGATACAGCTTGGCCAGCCTGCGACTGTTAAAGTGGCGGCAAACCTTGTTAGGCTATTAGCATATAACAACAAGGTAGGAGTTCACATTAGTTTGTCCGAAATTAATGCATGCTAAATATGTATGTAAAGCAATTTTCAATAAGAAACAGTAACAATTATTTGAAACAGTGCCGATGCCCCAAGGCCCCCAACCCAGCCAAGGAGATAGATAAAAACTCTCCTGTT

Library


Library category	ESTs
Dulce mature fruit library	1

Homology

[Close]

BLAST of MU60654 vs. Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.9e-19
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAADSQIVSDYVR+FLHQHTIQLGQPATVKVAANL RLL+YNNK
Sbjct: 57  CRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNK 104

Query: 61   120
           
Sbjct: 117  104

Query: 121  145
           
Sbjct: 177  104

[Close]

BLAST of MU60654 vs. Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-18
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAADSQ+VSDYVR+FLHQHTIQ GQPATVKV+ANL+R+LAYNNK
Sbjct: 56  CRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNK 103

Query: 61   120
           
Sbjct: 116  103

Query: 121  145
           
Sbjct: 176  103

[Close]

BLAST of MU60654 vs. Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAAD+Q +SDYVR++L  HT +L     VK AA+L +LL Y+NK
Sbjct: 58  CRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNK 105

Query: 61   120
           
Sbjct: 118  105

Query: 121  145
           
Sbjct: 178  105

[Close]

BLAST of MU60654 vs. TrEMBL
Match: A0A166FNY4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_000673 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNKV 60
           CRSGSAADSQIVSDYVR+FLHQHTIQLGQPATVKVAANLVRLL+YNNKV
Sbjct: 73  CRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKV 121

Query: 61   120
           
Sbjct: 133  121

Query: 121  148
           
Sbjct: 193  121

[Close]

BLAST of MU60654 vs. TrEMBL
Match: B7FGZ8_MEDTR (Proteasome subunit beta type OS=Medicago truncatula GN=MTR_3g109210 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNKVGVHISL 60
           CRSGSAADSQ+VSDYVR+FLHQHTIQLGQPATVKVAANLVRLLAYNNK  +   L
Sbjct: 57  CRSGSAADSQVVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLAYNNKNNLQTGL 111

Query: 61   120
           
Sbjct: 117  111

Query: 121  166
           
Sbjct: 177  111

[Close]

BLAST of MU60654 vs. TrEMBL
Match: A0A0J8FPQ9_BETVU (Proteasome subunit beta type OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035270 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAADSQIVSDYVR+FLHQHTIQLGQPATVKVAANLVRLLAYNNK
Sbjct: 58  CRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLAYNNK 105

Query: 61   120
           
Sbjct: 118  105

Query: 121  145
           
Sbjct: 178  105

[Close]

BLAST of MU60654 vs. TrEMBL
Match: A0A118JT49_CYNCS (Proteasome subunit beta type OS=Cynara cardunculus var. scolymus GN=Ccrd_008128 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAADSQ+VSDYVRHFLHQHTIQLGQPATVKVAANL+RLL+YNNK
Sbjct: 59  CRSGSAADSQLVSDYVRHFLHQHTIQLGQPATVKVAANLIRLLSYNNK 106

Query: 61   120
           
Sbjct: 119  106

Query: 121  145
           
Sbjct: 179  106

[Close]

BLAST of MU60654 vs. TrEMBL
Match: A0A0B2QDZ8_GLYSO (Proteasome subunit beta type OS=Glycine soja GN=glysoja_025118 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAADSQIVSDYVR+FLHQHTIQLGQPATVKVAANLVRLLAYNNK
Sbjct: 58  CRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLAYNNK 105

Query: 61   120
           
Sbjct: 118  105

Query: 121  145
           
Sbjct: 178  105

[Close]

BLAST of MU60654 vs. TAIR10
Match: AT4G31300.2 (AT4G31300.2 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein)

HSP 1 Score: 91.3 bits (225), Expect = 3.6e-19
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAADSQ+VSDYVR+FLHQHTIQ GQPATVKV+ANL+R+LAYNNK
Sbjct: 56  CRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNK 103

Query: 61   120
           
Sbjct: 116  103

Query: 121  145
           
Sbjct: 176  103

[Close]

BLAST of MU60654 vs. NCBI nr
Match: gi|659088591|ref|XP_008445064.1| (PREDICTED: proteasome subunit beta type-6 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK
Sbjct: 58  CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 105

Query: 61   120
           
Sbjct: 118  105

Query: 121  145
           
Sbjct: 178  105

[Close]

BLAST of MU60654 vs. NCBI nr
Match: gi|694366972|ref|XP_009362017.1| (PREDICTED: proteasome subunit beta type-6-like [Pyrus x bretschneideri])

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANL+RL AYNNK
Sbjct: 60  CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLIRLFAYNNK 107

Query: 61   120
           
Sbjct: 120  107

Query: 121  145
           
Sbjct: 180  107

[Close]

BLAST of MU60654 vs. NCBI nr
Match: gi|976901908|gb|KVH89877.1| (hypothetical protein Ccrd_008128 [Cynara cardunculus var. scolymus])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNK 60
           CRSGSAADSQ+VSDYVRHFLHQHTIQLGQPATVKVAANL+RLL+YNNK
Sbjct: 59  CRSGSAADSQLVSDYVRHFLHQHTIQLGQPATVKVAANLIRLLSYNNK 106

Query: 61   120
           
Sbjct: 119  106

Query: 121  145
           
Sbjct: 179  106

[Close]

BLAST of MU60654 vs. NCBI nr
Match: gi|357466571|ref|XP_003603570.1| (proteasome subunit beta protein [Medicago truncatula])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNKVGVHISL 60
           CRSGSAADSQ+VSDYVR+FLHQHTIQLGQPATVKVAANLVRLLAYNNK  +   L
Sbjct: 57  CRSGSAADSQVVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLAYNNKNNLQTGL 111

Query: 61   120
           
Sbjct: 117  111

Query: 121  166
           
Sbjct: 177  111

[Close]

BLAST of MU60654 vs. NCBI nr
Match: gi|1021050226|gb|KZN08004.1| (hypothetical protein DCAR_000673 [Daucus carota subsp. sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1   CRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNKV 60
           CRSGSAADSQIVSDYVR+FLHQHTIQLGQPATVKVAANLVRLL+YNNKV
Sbjct: 73  CRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKV 121

Query: 61   120
           
Sbjct: 133  121

Query: 121  148
           
Sbjct: 193  121

The following BLAST results are available for this feature:

BLAST of MU60654 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSB6_TOBAC	9.9e-19	93.75	Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1	[more]
PSB6_ARATH	6.4e-18	87.50	Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2	[more]
PSB6_DICDI	1.2e-08	58.33	Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1	[more]

BLAST of MU60654 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A166FNY4_DAUCA	1.3e-17	95.92	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_000673 PE=4 SV=1	[more]
B7FGZ8_MEDTR	1.7e-17	85.45	Proteasome subunit beta type OS=Medicago truncatula GN=MTR_3g109210 PE=2 SV=1	[more]
A0A0J8FPQ9_BETVU	1.7e-17	97.92	Proteasome subunit beta type OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035270 P...	[more]
A0A118JT49_CYNCS	1.7e-17	93.75	Proteasome subunit beta type OS=Cynara cardunculus var. scolymus GN=Ccrd_008128 ...	[more]
A0A0B2QDZ8_GLYSO	1.7e-17	97.92	Proteasome subunit beta type OS=Glycine soja GN=glysoja_025118 PE=3 SV=1	[more]

BLAST of MU60654 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31300.2	3.6e-19	87.50	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily ...	[more]

BLAST of MU60654 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088591\|ref\|XP_008445064.1\|	2.9e-18	100.00	PREDICTED: proteasome subunit beta type-6 [Cucumis melo]	[more]
gi\|694366972\|ref\|XP_009362017.1\|	1.1e-17	95.83	PREDICTED: proteasome subunit beta type-6-like [Pyrus x bretschneideri]	[more]
gi\|976901908\|gb\|KVH89877.1\|	1.4e-17	93.75	hypothetical protein Ccrd_008128 [Cynara cardunculus var. scolymus]	[more]
gi\|357466571\|ref\|XP_003603570.1\|	1.4e-17	85.45	proteasome subunit beta protein [Medicago truncatula]	[more]
gi\|1021050226\|gb\|KZN08004.1\|	1.4e-17	95.92	hypothetical protein DCAR_000673 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001353	Proteasome_sua/b

Vocabulary: **Molecular Function**
Term	Definition
GO:0004298	threonine-type endopeptidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005839	proteasome core complex

Vocabulary: **Biological Process**
Term	Definition
GO:0051603	proteolysis involved in cellular protein catabolic process

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051603	proteolysis involved in cellular protein catabolic process
cellular_component	GO:0005839	proteasome core complex
molecular_function	GO:0004298	threonine-type endopeptidase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C011172	MELO3C011172	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FR15G13	FR15G13	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001353	Proteasome, subunit alpha/beta	PFAM	PF00227	Proteasome	coord: 1..47 score: 1.
None	No IPR available	PANTHER	PTHR11599	PROTEASOME SUBUNIT ALPHA/BETA	coord: 1..48 score: 1.2
None	No IPR available	PANTHER	PTHR11599:SF4	PROTEASOME SUBUNIT BETA TYPE	coord: 1..48 score: 1.2