Cla004783 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004783
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Callose synthase (AHRD V1 ***- F4IRV4_ARATH)
Location	Chr3 : 24186295 .. 24187029 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGAGAGGGGGGTCCGATCAGCCTCCTCCATTGCAGAGGAGGATCACAAGGACACAGACAACGGGGAATCTCGGTGAGTCAGTGTTCGACAGCGAAGTTGTACCGTCGTCGCTCAAGGAAATTGCACCAATCCTGCGTGTGGCTAATGAGGTTGAGTCCAGCAATCCCAGAGTGGCATATCTGTGTAAGTTTGGAACAATGTTGTACTATTAATAGGTTATTATTTTGGTATATGCAGAATTCTAATATGAACCATTATCATAGATAAGTACTTCAATGCTTTCGTCGAAAAATATCTGTTTTCTTCTTGATAACAAACTCCAACACTATCCAATTGTTGTATTAATTCTGTACGCCATTTCCAGTTAAGTGCTTGGCTTGGTTATGTCCGTACCAAAAAAAAAATGCTGGTCTGTTCTATCCAGTGTTTACTGGCACAATGCCACCTTACAGTGTGGGGGCTGCACAAGCAAGTTTACTTTGTACTTTTACCTTCTAGTGTCACCTTCGTGCAAGCAAATTTTGATTCTGGGTTTCTATCAAGCTGCCCGATTTGGATTTGCAAATGTCCACACTTGAAAGTGAAAATTTTGAAATTTTCCATAATGTTTGCTTGCTAGCTTTATTACTTGAAACTATGAGGTATTGACTTAACGTCAAGTCAATGAATTGATTCATATTTGTGCAGCTAAACCTACTTTTTGGTTCTTGTCAATGTACTTCAACTAA

mRNA sequence

ATGTCGTCGAGAGGGGGGTCCGATCAGCCTCCTCCATTGCAGAGGAGGATCACAAGGACACAGACAACGGGGAATCTCGGTGAGTCAGTGTTCGACAGCGAAGTTGTACCGTCGTCGCTCAAGGAAATTGCACCAATCCTGCGTGTGGCTAATGAGGTTGAGTCCAGCAATCCCAGAGTGGCATATCTGTCTAAACCTACTTTTTGGTTCTTGTCAATGTACTTCAACTAA

Coding sequence (CDS)

ATGTCGTCGAGAGGGGGGTCCGATCAGCCTCCTCCATTGCAGAGGAGGATCACAAGGACACAGACAACGGGGAATCTCGGTGAGTCAGTGTTCGACAGCGAAGTTGTACCGTCGTCGCTCAAGGAAATTGCACCAATCCTGCGTGTGGCTAATGAGGTTGAGTCCAGCAATCCCAGAGTGGCATATCTGTCTAAACCTACTTTTTGGTTCTTGTCAATGTACTTCAACTAA

Protein sequence

MSSRGGSDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRVAYLSKPTFWFLSMYFN

Homology

[Close]

BLAST of Cla004783 vs. Swiss-Prot
Match: CALS2_ARATH (Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-19
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 1  MSSRGGSDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60
          M+ R G D PPP QRRI RTQT GNLGE++ DSEVVPSSL EIAPILRVANEVE+SNPRV
Sbjct: 1  MAQRKGPDPPPP-QRRILRTQTAGNLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRV 60

Query: 61 AYLSK 66
          AYL +
Sbjct: 61 AYLCR 64

[Close]

BLAST of Cla004783 vs. Swiss-Prot
Match: CALS3_ARATH (Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3)

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-19
Identity = 53/66 (80.30%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 2  SSRGGSDQPP--PLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPR 61
          ++RGG DQ P  P QRRI RTQT GNLGES FDSEVVPSSL EIAPILRVANEVESSNPR
Sbjct: 3  ATRGGPDQGPSQPQQRRIIRTQTAGNLGES-FDSEVVPSSLVEIAPILRVANEVESSNPR 62

Query: 62 VAYLSK 66
          VAYL +
Sbjct: 63 VAYLCR 67

[Close]

BLAST of Cla004783 vs. Swiss-Prot
Match: CALS1_ARATH (Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 3.8e-18
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 1  MSSRGGSDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60
          M+ R   D PPP QRRI RTQT G+LGE++ DSEVVPSSL EIAPILRVANEVE+SNPRV
Sbjct: 1  MAQRREPDPPPP-QRRILRTQTVGSLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRV 60

Query: 61 AYLSK 66
          AYL +
Sbjct: 61 AYLCR 64

[Close]

BLAST of Cla004783 vs. Swiss-Prot
Match: CALS6_ARATH (Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-09
Identity = 37/69 (53.62%), Postives = 40/69 (57.97%), Query Frame = 1


Query: 2  SSRGGSDQPPPLQRRITRTQTT-----GNLGESVFDSEVVPSSLKEIAPILRVANEVESS 61
          SS G ++ P  L RR     TT      N   S  DSE+VPSSL  IAPILRVANE+E  
Sbjct: 4  SSSGTAELPRSLSRRAPSRATTMMIDRPNEDASAMDSELVPSSLASIAPILRVANEIEKD 63

Query: 62 NPRVAYLSK 66
          NPRVAYL +
Sbjct: 64 NPRVAYLCR 72

[Close]

BLAST of Cla004783 vs. Swiss-Prot
Match: CALS7_ARATH (Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=3 SV=3)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-07
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 1


Query: 4  RGGSDQPPPLQ------RRITRTQTT----GNLGESVFDSEVVPSSLKEIAPILRVANEV 63
          RG   +PP +Q      R++TR  T      N  E   DSE+VPSSL  IAPILRVAN++
Sbjct: 9  RGEDGRPPQMQPVRSMSRKMTRAGTMMIEHPNEDERPIDSELVPSSLASIAPILRVANDI 68

Query: 64 ESSNPRVAYLSK 66
          +  N RVAYL +
Sbjct: 69 DQDNARVAYLCR 80

[Close]

BLAST of Cla004783 vs. TrEMBL
Match: A0A0A0M2L3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605110 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1  MSSRGGSDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60
          M+SR G DQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV
Sbjct: 1  MTSRVGPDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60

Query: 61 AYLSK 66
          AYL +
Sbjct: 61 AYLCR 65

[Close]

BLAST of Cla004783 vs. TrEMBL
Match: M5W8C6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000306mg PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.7e-21
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 2  SSRGGSDQPPP-LQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 61
          SSRGGSDQPPP LQRR+TRTQT GNLGE+ FDSEVVPSSL EIAPILRVANEVE+ NPRV
Sbjct: 3  SSRGGSDQPPPQLQRRLTRTQTAGNLGETAFDSEVVPSSLVEIAPILRVANEVETHNPRV 62

Query: 62 AYLSK 66
          AYL +
Sbjct: 63 AYLCR 67

[Close]

BLAST of Cla004783 vs. TrEMBL
Match: A0A068URA5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033080001 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.8e-21
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1  MSSRGGSD-QPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPR 60
          MSSRGGS  Q PPLQRR+TRTQT GNLGE+VFDSEVVPSSL EIAPILRVANEVE SNPR
Sbjct: 1  MSSRGGSSTQQPPLQRRLTRTQTVGNLGETVFDSEVVPSSLVEIAPILRVANEVEHSNPR 60

Query: 61 VAYLSK 66
          VAYL +
Sbjct: 61 VAYLCR 66

[Close]

BLAST of Cla004783 vs. TrEMBL
Match: V4U518_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014015mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1  MSSRGGSDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60
          MSSRGG    PP QRRI RTQT GNLGES+FDSEVVPSSL EIAPILRVANEVESSNPRV
Sbjct: 1  MSSRGGGPDQPPPQRRIMRTQTAGNLGESMFDSEVVPSSLSEIAPILRVANEVESSNPRV 60

Query: 61 AYLSK 66
          AYL +
Sbjct: 61 AYLCR 65

[Close]

BLAST of Cla004783 vs. TrEMBL
Match: W9QMU2_9ROSA (Callose synthase 3 OS=Morus notabilis GN=L484_018424 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 1  MSSRGGSDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60
          MSSRG SDQ P  QRRI RTQT GNLGES+FDSEVVPSSL EIAPILRVANEVESSNPRV
Sbjct: 1  MSSRGRSDQSPQPQRRIQRTQTAGNLGESIFDSEVVPSSLVEIAPILRVANEVESSNPRV 60

Query: 61 AYLSK 66
          AYL +
Sbjct: 61 AYLCR 65

[Close]

BLAST of Cla004783 vs. NCBI nr
Match: gi|659100459|ref|XP_008451108.1| (PREDICTED: callose synthase 3 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-24
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1  MSSRGGSDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60
          MSSR G DQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV
Sbjct: 1  MSSRVGPDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60

Query: 61 AYLSK 66
          AYL +
Sbjct: 61 AYLCR 65

[Close]

BLAST of Cla004783 vs. NCBI nr
Match: gi|778663505|ref|XP_011660100.1| (PREDICTED: callose synthase 3 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1  MSSRGGSDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60
          M+SR G DQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV
Sbjct: 1  MTSRVGPDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60

Query: 61 AYLSK 66
          AYL +
Sbjct: 61 AYLCR 65

[Close]

BLAST of Cla004783 vs. NCBI nr
Match: gi|700211335|gb|KGN66431.1| (hypothetical protein Csa_1G605110 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1  MSSRGGSDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60
          M+SR G DQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV
Sbjct: 1  MTSRVGPDQPPPLQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 60

Query: 61 AYLSK 66
          AYL +
Sbjct: 61 AYLCR 65

[Close]

BLAST of Cla004783 vs. NCBI nr
Match: gi|645277135|ref|XP_008243622.1| (PREDICTED: callose synthase 3 [Prunus mume])

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-21
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 2  SSRGGSDQPPP-LQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 61
          SSRGGSDQPPP LQRR+TRTQT GNLGE+ FDSEVVPSSL EIAPILRVANEVES NPRV
Sbjct: 3  SSRGGSDQPPPQLQRRLTRTQTAGNLGETAFDSEVVPSSLVEIAPILRVANEVESHNPRV 62

Query: 62 AYLSK 66
          AYL +
Sbjct: 63 AYLCR 67

[Close]

BLAST of Cla004783 vs. NCBI nr
Match: gi|595842281|ref|XP_007208387.1| (hypothetical protein PRUPE_ppa000306mg [Prunus persica])

HSP 1 Score: 107.8 bits (268), Expect = 8.2e-21
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 2  SSRGGSDQPPP-LQRRITRTQTTGNLGESVFDSEVVPSSLKEIAPILRVANEVESSNPRV 61
          SSRGGSDQPPP LQRR+TRTQT GNLGE+ FDSEVVPSSL EIAPILRVANEVE+ NPRV
Sbjct: 3  SSRGGSDQPPPQLQRRLTRTQTAGNLGETAFDSEVVPSSLVEIAPILRVANEVETHNPRV 62

Query: 62 AYLSK 66
          AYL +
Sbjct: 63 AYLCR 67

The following BLAST results are available for this feature:

BLAST of Cla004783 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CALS2_ARATH	1.2e-19	76.92	Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3	[more]
CALS3_ARATH	2.6e-19	80.30	Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3	[more]
CALS1_ARATH	3.8e-18	73.85	Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2	[more]
CALS6_ARATH	1.1e-09	53.62	Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2	[more]
CALS7_ARATH	1.0e-07	47.22	Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=3 SV=3	[more]

BLAST of Cla004783 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2L3_CUCSA	2.5e-24	92.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605110 PE=4 SV=1	[more]
M5W8C6_PRUPE	5.7e-21	84.62	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000306mg PE=4 SV=1	[more]
A0A068URA5_COFCA	9.8e-21	84.85	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033080001 PE=4 SV=1	[more]
V4U518_9ROSI	1.7e-20	83.08	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014015mg PE=4 SV=1	[more]
W9QMU2_9ROSA	1.7e-20	84.62	Callose synthase 3 OS=Morus notabilis GN=L484_018424 PE=4 SV=1	[more]

BLAST of Cla004783 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100459\|ref\|XP_008451108.1\|	1.6e-24	93.85	PREDICTED: callose synthase 3 [Cucumis melo]	[more]
gi\|778663505\|ref\|XP_011660100.1\|	3.6e-24	92.31	PREDICTED: callose synthase 3 [Cucumis sativus]	[more]
gi\|700211335\|gb\|KGN66431.1\|	3.6e-24	92.31	hypothetical protein Csa_1G605110 [Cucumis sativus]	[more]
gi\|645277135\|ref\|XP_008243622.1\|	3.7e-21	86.15	PREDICTED: callose synthase 3 [Prunus mume]	[more]
gi\|595842281\|ref\|XP_007208387.1\|	8.2e-21	84.62	hypothetical protein PRUPE_ppa000306mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006075	(1->3)-beta-D-glucan biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0008360	regulation of cell shape
cellular_component	GO:0000148	1,3-beta-D-glucan synthase complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003843	1,3-beta-D-glucan synthase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004783	Cla004783.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12741	LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1	coord: 18..63 score: 3.6
None	No IPR available	PANTHER	PTHR12741:SF17	SUBFAMILY NOT NAMED	coord: 18..63 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004783	ClCG03G013790	Watermelon (Charleston Gray)	wcgwmB224
Cla004783	CSPI01G29840	Wild cucumber (PI 183967)	cpiwmB022
Cla004783	Cucsa.142930	Cucumber (Gy14) v1	cgywmB251
Cla004783	CmaCh11G008230	Cucurbita maxima (Rimu)	cmawmB099
Cla004783	CmoCh11G008300	Cucurbita moschata (Rifu)	cmowmB088
Cla004783	Lsi06G004640	Bottle gourd (USVL1VR-Ls)	lsiwmB396
Cla004783	Cp4.1LG18g01460	Cucurbita pepo (Zucchini)	cpewmB355
Cla004783	Cp4.1LG04g11860	Cucurbita pepo (Zucchini)	cpewmB642
Cla004783	CsGy1G029190	Cucumber (Gy14) v2	cgybwmB022
Cla004783	CsGy7G017940	Cucumber (Gy14) v2	cgybwmB543
Cla004783	MELO3C015661.2	Melon (DHL92) v3.6.1	medwmB262
Cla004783	CsaV3_1G042290	Cucumber (Chinese Long) v3	cucwmB025
Cla004783	Bhi02G001364	Wax gourd	wgowmB653
Cla004783	Bhi09G000483	Wax gourd	wgowmB608

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004783	Silver-seed gourd	carwmB0163
Cla004783	Silver-seed gourd	carwmB0463
Cla004783	Cucumber (Chinese Long) v3	cucwmB610
Cla004783	Watermelon (97103) v2	wmwmbB125
Cla004783	Cucurbita maxima (Rimu)	cmawmB046
Cla004783	Cucurbita moschata (Rifu)	cmowmB037
Cla004783	Melon (DHL92) v3.5.1	mewmB224
Cla004783	Melon (DHL92) v3.5.1	mewmB271
Cla004783	Cucumber (Chinese Long) v2	cuwmB020