CU095007 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU095007
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Protein RMD5-A-like protein
Location	Chr6 : 24417405 .. 24418183 (+)
Sequence length	781

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACTCTCATTCTCAATTATTATCAGTAGCTAACTGGGATAAAGTTGCTGAGGAGCTTATACGACAGTTTTGCAATTTTCTTGGTCAGTCCTATGAGAGCCCCTTAGGTGTAACGGTTGCAGCAGGGGTCCAGGGATTGCCTCCTCTCTTGAAGTTTATGAATGTTATGGCTGGGAAGAAACAGGAATGGCAATCTATGAAGCAGTTGCCTGTTCCTGTGGAGTTGGACAGAGAATTTCAGTTCCATTCCATCTTTGTTTGTCCAGTGTCGAAAGAACAGTCAACCGAAGAAAATCCACCAATGTTAATGCTGTGTGGCCATGTCCTCTGCAAGCAGTCTATCATGAAGATGTCCAAAAACAGCACAAAATACATTTAAGTGCCCGTATTGTCTAACAGACATTGATGCTACACGGTGTAGGCAATTGTACTTTTGACGCTTACACAAAAGTCATGGTTAATGTTGTACGAAACTTCCTCTCTTCAACTGAACCAATATTTGCTGGATTTAGTTGTGGTGTAACAAAGGGTGTGAAATGGGGGGGAAATGGTTGTCAGTTGTGTACTGTTTGTTGCTGTATTTGTTGTAAATACATATTCTTTCTACGTGTTGGAATGTTGAGCAAGTCACTCCATAGACATCTTTTAAGTTTGATGATAGGTTTACTGCATAGGAGTGTGCTTAGCTGCTTCTGGAGCTCACCTCCTTCTGAATAAATATGTTTTCTCCTTTTAATTTCTCAACATAACTATAATTGATATCAAAGAAATTTGAGCCCTAAA

Library


Library category	ESTs
Cucumber fruit library	1
fruit (8DPP) library	1
gynoecious flower library	3
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU095007 vs. Swiss-Prot
Match: YB83_SCHPO (LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.03c PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-27
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 3


Query: 30  NWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQEWQSMKQLP 89
           +W  +    +R+FC  LG S ESPL + V AG   LP LLK  ++M  K  EW S  +LP
Sbjct: 265 DWKSLELLFVREFCAALGMSLESPLDIVVNAGAIALPILLKMSSIMKKKHTEWTSQGELP 324

Query: 90  VPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKYI*VPVL 149
           V + L   + FHS+F CPVSKEQ+TEENPPM+M CGHV+ K+S+ ++S+N ++    P  
Sbjct: 325 VEIFLPSSYHFHSVFTCPVSKEQATEENPPMMMSCGHVIVKESLRQLSRNGSQRFKCPYC 384

Query: 150 SNRH 209
            N +
Sbjct: 385 PNEN 388

Query: 210  269
           
Sbjct: 445  388

Query: 270  329
           
Sbjct: 505  388

Query: 330  389
           
Sbjct: 565  388

Query: 390  402
           
Sbjct: 625  388

[Close]

BLAST of CU095007 vs. Swiss-Prot
Match: RMD5A_XENLA (Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 3


Query: 15  LLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE--W 74
           LL    W  + +   R  C+ LG S ESPL V+ +AG   LP L+    V+  ++    W
Sbjct: 253 LLDANQWADICDIFTRDACSLLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCSGVW 312

Query: 75  QSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 134
               +LP+ V+L ++  +HSIF CP+ ++Q+TE NPPM ++CGH++ + ++ KM   S
Sbjct: 313 NQKDELPIEVDLGKKCWYHSIFACPILRQQTTENNPPMKLVCGHIISRDALNKMFNGS 370

Query: 135  194
           
Sbjct: 373  370

Query: 195  254
           
Sbjct: 433  370

Query: 255  314
           
Sbjct: 493  370

Query: 315  363
           
Sbjct: 553  370

[Close]

BLAST of CU095007 vs. Swiss-Prot
Match: RMD5A_HUMAN (Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 3


Query: 15  LLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE--W 74
           LL    W  + +   R  C  LG S ESPL V+ +AG   LP L+    V+  ++    W
Sbjct: 253 LLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVW 312

Query: 75  QSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 134
               +LP+ V+L ++  +HSIF CP+ ++Q+T+ NPPM ++CGH++ + ++ KM   S
Sbjct: 313 NQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGS 370

Query: 135  194
           
Sbjct: 373  370

Query: 195  254
           
Sbjct: 433  370

Query: 255  314
           
Sbjct: 493  370

Query: 315  363
           
Sbjct: 553  370

[Close]

BLAST of CU095007 vs. Swiss-Prot
Match: RMD5A_MOUSE (Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 3


Query: 15  LLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE--W 74
           LL    W  + +   R  C  LG S ESPL V+ +AG   LP L+    V+  ++    W
Sbjct: 253 LLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVW 312

Query: 75  QSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 134
               +LP+ V+L ++  +HSIF CP+ ++Q+T+ NPPM ++CGH++ + ++ KM   S
Sbjct: 313 NQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGS 370

Query: 135  194
           
Sbjct: 373  370

Query: 195  254
           
Sbjct: 433  370

Query: 255  314
           
Sbjct: 493  370

Query: 315  363
           
Sbjct: 553  370

[Close]

BLAST of CU095007 vs. Swiss-Prot
Match: RMD5A_XENTR (Protein RMD5 homolog A OS=Xenopus tropicalis GN=rmnd5a PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 3


Query: 15  LLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE--W 74
           LL    W  + +   R  C  LG S ESPL V+ +AG   LP L+    V+  ++    W
Sbjct: 253 LLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVW 312

Query: 75  QSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 134
               +LP+ V+L ++  +HSIF CP+ ++Q+T+ NPPM ++CGH++ + ++ KM   S
Sbjct: 313 NQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGS 370

Query: 135  194
           
Sbjct: 373  370

Query: 195  254
           
Sbjct: 433  370

Query: 255  314
           
Sbjct: 493  370

Query: 315  363
           
Sbjct: 553  370

[Close]

BLAST of CU095007 vs. TrEMBL
Match: A0A0A0KIN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497200 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.4e-63
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 3


Query: 3   SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ 62
           SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ
Sbjct: 216 SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ 275

Query: 63  EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 122
           EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS
Sbjct: 276 EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 335

Query: 123 TK 182
           TK
Sbjct: 336 TK 337

Query: 183  242
           
Sbjct: 396  337

Query: 243  302
           
Sbjct: 456  337

Query: 303  362
           
Sbjct: 516  337

Query: 363  369
           
Sbjct: 576  337

[Close]

BLAST of CU095007 vs. TrEMBL
Match: M5VYM6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006991mg PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.9e-55
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 3


Query: 6   HSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE 65
           +S LLS ANWDKV  EL RQFCN LGQSYESPL VT+AAG+QGLPPLLKFMNVMAGK+QE
Sbjct: 245 YSHLLSPANWDKVTGELTRQFCNLLGQSYESPLSVTIAAGIQGLPPLLKFMNVMAGKRQE 304

Query: 66  WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNST 125
           WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLM CGHVLCKQSI KMSKN T
Sbjct: 305 WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMSCGHVLCKQSITKMSKNGT 364

Query: 126 K 185
           K
Sbjct: 365 K 365

Query: 186  245
           
Sbjct: 425  365

Query: 246  305
           
Sbjct: 485  365

Query: 306  365
           
Sbjct: 545  365

Query: 366  369
           
Sbjct: 605  365

[Close]

BLAST of CU095007 vs. TrEMBL
Match: W9RQC0_9ROSA (Protein RMD5-A-like protein OS=Morus notabilis GN=L484_016101 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.7e-54
Identity = 104/121 (85.95%), Postives = 111/121 (91.74%), Query Frame = 3


Query: 6   HSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE 65
           ++QLLS  NWDKVAE+L RQFCN LGQSYESPL VT+AAG QGLPPLLKFM VMAGKKQE
Sbjct: 245 YAQLLSPTNWDKVAEKLTRQFCNILGQSYESPLNVTIAAGAQGLPPLLKFMTVMAGKKQE 304

Query: 66  WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNST 125
           WQ MKQLPVPVELD+EFQFHSIFVCPVSKEQS +ENPPMLM CGHVLCKQSIMKMSKNST
Sbjct: 305 WQLMKQLPVPVELDKEFQFHSIFVCPVSKEQSNDENPPMLMTCGHVLCKQSIMKMSKNST 364

Query: 126 K 185
           +
Sbjct: 365 R 365

Query: 186  245
           
Sbjct: 425  365

Query: 246  305
           
Sbjct: 485  365

Query: 306  365
           
Sbjct: 545  365

Query: 366  369
           
Sbjct: 605  365

[Close]

BLAST of CU095007 vs. TrEMBL
Match: A0A0B0MWW4_GOSAR (Protein RMD5 A OS=Gossypium arboreum GN=F383_29251 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.9e-53
Identity = 103/121 (85.12%), Postives = 110/121 (90.91%), Query Frame = 3


Query: 6   HSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE 65
           ++ LLS  NWD VAEEL RQFCN LGQSY+SPL VT+AAGVQGLPPLLKFM VMAGKKQE
Sbjct: 236 YAHLLSPTNWDIVAEELTRQFCNLLGQSYQSPLSVTIAAGVQGLPPLLKFMTVMAGKKQE 295

Query: 66  WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNST 125
           WQSMKQLPVPVELD+EFQFHSIFVCPVSKEQSTE+NPPMLM CGHVLCKQSI KMSKN +
Sbjct: 296 WQSMKQLPVPVELDKEFQFHSIFVCPVSKEQSTEDNPPMLMSCGHVLCKQSINKMSKNGS 355

Query: 126 K 185
           K
Sbjct: 356 K 356

Query: 186  245
           
Sbjct: 416  356

Query: 246  305
           
Sbjct: 476  356

Query: 306  365
           
Sbjct: 536  356

Query: 366  369
           
Sbjct: 596  356

[Close]

BLAST of CU095007 vs. TrEMBL
Match: A0A061DHA6_THECC (LisH/CRA/RING-U-box domains-containing protein OS=Theobroma cacao GN=TCM_000906 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.9e-53
Identity = 103/121 (85.12%), Postives = 110/121 (90.91%), Query Frame = 3


Query: 6   HSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE 65
           ++ LLS  NWD VAEEL RQFCN LGQSYESPL VT+AAGVQGLPPLLKFM VMAGKKQE
Sbjct: 240 YAHLLSPTNWDVVAEELTRQFCNLLGQSYESPLNVTIAAGVQGLPPLLKFMTVMAGKKQE 299

Query: 66  WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNST 125
           WQSMKQLPVPVELD+EFQFH IFVCPVSKEQST++NPPMLM CGHVLCKQSI KMSKNS+
Sbjct: 300 WQSMKQLPVPVELDKEFQFHPIFVCPVSKEQSTDDNPPMLMSCGHVLCKQSINKMSKNSS 359

Query: 126 K 185
           K
Sbjct: 360 K 360

Query: 186  245
           
Sbjct: 420  360

Query: 246  305
           
Sbjct: 480  360

Query: 306  365
           
Sbjct: 540  360

Query: 366  369
           
Sbjct: 600  360

[Close]

BLAST of CU095007 vs. NCBI nr
Match: gi|449451359|ref|XP_004143429.1| (PREDICTED: lisH domain-containing protein C29A3.03c [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 5.4e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 3


Query: 3   SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ 62
           SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ
Sbjct: 246 SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ 305

Query: 63  EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 122
           EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS
Sbjct: 306 EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 365

Query: 123 TK 182
           TK
Sbjct: 366 TK 367

Query: 183  242
           
Sbjct: 426  367

Query: 243  302
           
Sbjct: 486  367

Query: 303  362
           
Sbjct: 546  367

Query: 363  369
           
Sbjct: 606  367

[Close]

BLAST of CU095007 vs. NCBI nr
Match: gi|700193465|gb|KGN48669.1| (hypothetical protein Csa_6G497200 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 5.4e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 3


Query: 3   SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ 62
           SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ
Sbjct: 216 SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ 275

Query: 63  EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 122
           EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS
Sbjct: 276 EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 335

Query: 123 TK 182
           TK
Sbjct: 336 TK 337

Query: 183  242
           
Sbjct: 396  337

Query: 243  302
           
Sbjct: 456  337

Query: 303  362
           
Sbjct: 516  337

Query: 363  369
           
Sbjct: 576  337

[Close]

BLAST of CU095007 vs. NCBI nr
Match: gi|659079880|ref|XP_008440495.1| (PREDICTED: protein RMD5 homolog A [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 5.4e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 3


Query: 3   SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ 62
           SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ
Sbjct: 246 SHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQ 305

Query: 63  EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 122
           EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS
Sbjct: 306 EWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNS 365

Query: 123 TK 182
           TK
Sbjct: 366 TK 367

Query: 183  242
           
Sbjct: 426  367

Query: 243  302
           
Sbjct: 486  367

Query: 303  362
           
Sbjct: 546  367

Query: 363  369
           
Sbjct: 606  367

[Close]

BLAST of CU095007 vs. NCBI nr
Match: gi|595824983|ref|XP_007205330.1| (hypothetical protein PRUPE_ppa006991mg [Prunus persica])

HSP 1 Score: 226.1 bits (575), Expect = 7.1e-56
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 3


Query: 6   HSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE 65
           +S LLS ANWDKV  EL RQFCN LGQSYESPL VT+AAG+QGLPPLLKFMNVMAGK+QE
Sbjct: 245 YSHLLSPANWDKVTGELTRQFCNLLGQSYESPLSVTIAAGIQGLPPLLKFMNVMAGKRQE 304

Query: 66  WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNST 125
           WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLM CGHVLCKQSI KMSKN T
Sbjct: 305 WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMSCGHVLCKQSITKMSKNGT 364

Query: 126 K 185
           K
Sbjct: 365 K 365

Query: 186  245
           
Sbjct: 425  365

Query: 246  305
           
Sbjct: 485  365

Query: 306  365
           
Sbjct: 545  365

Query: 366  369
           
Sbjct: 605  365

[Close]

BLAST of CU095007 vs. NCBI nr
Match: gi|645219650|ref|XP_008236751.1| (PREDICTED: protein RMD5 homolog A [Prunus mume])

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 3


Query: 6   HSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE 65
           +S LLS ANWDKV  EL RQFCN LGQSYESPL VT+AAG+QGLPPLLKFMNVMAGK+QE
Sbjct: 245 YSHLLSPANWDKVTGELTRQFCNLLGQSYESPLSVTMAAGIQGLPPLLKFMNVMAGKRQE 304

Query: 66  WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNST 125
           WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLM CGHVLCKQSI KMSKN T
Sbjct: 305 WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMSCGHVLCKQSITKMSKNGT 364

Query: 126 K 185
           K
Sbjct: 365 K 365

Query: 186  245
           
Sbjct: 425  365

Query: 246  305
           
Sbjct: 485  365

Query: 306  365
           
Sbjct: 545  365

Query: 366  369
           
Sbjct: 605  365

The following BLAST results are available for this feature:

BLAST of CU095007 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YB83_SCHPO	2.4e-27	45.97	LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe (strain 97...	[more]
RMD5A_XENLA	1.2e-18	36.44	Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1	[more]
RMD5A_HUMAN	7.6e-18	35.59	Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1	[more]
RMD5A_MOUSE	7.6e-18	35.59	Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a PE=1 SV=2	[more]
RMD5A_XENTR	7.6e-18	35.59	Protein RMD5 homolog A OS=Xenopus tropicalis GN=rmnd5a PE=2 SV=1	[more]

BLAST of CU095007 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIN7_CUCSA	1.4e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497200 PE=4 SV=1	[more]
M5VYM6_PRUPE	1.9e-55	88.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006991mg PE=4 SV=1	[more]
W9RQC0_9ROSA	2.7e-54	85.95	Protein RMD5-A-like protein OS=Morus notabilis GN=L484_016101 PE=4 SV=1	[more]
A0A0B0MWW4_GOSAR	3.9e-53	85.12	Protein RMD5 A OS=Gossypium arboreum GN=F383_29251 PE=4 SV=1	[more]
A0A061DHA6_THECC	3.9e-53	85.12	LisH/CRA/RING-U-box domains-containing protein OS=Theobroma cacao GN=TCM_000906 ...	[more]

BLAST of CU095007 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451359\|ref\|XP_004143429.1\|	5.4e-64	100.00	PREDICTED: lisH domain-containing protein C29A3.03c [Cucumis sativus]	[more]
gi\|700193465\|gb\|KGN48669.1\|	5.4e-64	100.00	hypothetical protein Csa_6G497200 [Cucumis sativus]	[more]
gi\|659079880\|ref\|XP_008440495.1\|	5.4e-64	100.00	PREDICTED: protein RMD5 homolog A [Cucumis melo]	[more]
gi\|595824983\|ref\|XP_007205330.1\|	7.1e-56	88.43	hypothetical protein PRUPE_ppa006991mg [Prunus persica]	[more]
gi\|645219650\|ref\|XP_008236751.1\|	1.2e-55	88.43	PREDICTED: protein RMD5 homolog A [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR024964	CTLH/CRA
IPR027370	Znf-RING_LisH
IPR027711	Rmd5

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G497200	Csa6G497200	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
Cuc4_3_F09	Cuc4_3_F09	EST
FKNP3UI02MCK3J	FKNP3UI02MCK3J	EST
G0119042	G0119042	EST
G0155123	G0155123	EST
G0180013	G0180013	EST
H0082958	H0082958	EST
H0107165	H0107165	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 85..121 score: 7.
IPR024964	CTLH/CRA C-terminal to LisH motif domain	PFAM	PF10607	CLTH	coord: 3..47 score: 3.
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 87..122 score: 4.
IPR027711	Rmd5	PANTHER	PTHR12170:SF3	REQUIRED FOR MEIOTIC NUCLEAR DIVISION 5 HOMOLOG B (S. CEREVISIAE)	coord: 3..122 score: 5.1
None	No IPR available	PANTHER	PTHR12170	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	coord: 3..122 score: 5.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 81..121 score: 3.8