CU102695 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU102695
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPolygalacturonase non-catalytic protein
LocationChr1 : 999544 .. 999759 (+)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CATCATCTGGGGTCCAGAGCACGGTGCATTCGTGGCACTTGGTTCGGGTCCGGGTCAAATAGAAGTCTGCCATTGGATATTCGAGAACGACATGTCGTGGAATGTTGCTGATTGAATGAATTTTTATTTTTATTTTTATTTTGCTAATATTATTGTTACCAAAACCATGGTTTATTTTAATTTAATTCAATGTTTTTAATTTCGGTAGGTTTAGTG
Homology
[Close]
BLAST of CU102695 vs. Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-13
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGP HGAFVALGSGPG+IEVCHWIFENDM+W +AD
Sbjct: 596 WGPSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 630

Query: 68   113
           
Sbjct: 656  630

[Close]
BLAST of CU102695 vs. Swiss-Prot
Match: PGL2_ARATH (Polygalacturonase 1 beta-like protein 2 OS=Arabidopsis thaliana GN=PGL2 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.6e-13
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           W P HGAF+ALGSGPGQIEVCHWIFENDM+WN+ D
Sbjct: 590 WSPSHGAFLALGSGPGQIEVCHWIFENDMTWNIID 624

Query: 68   113
           
Sbjct: 650  624

[Close]
BLAST of CU102695 vs. Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-13
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGP HGAFVALGSGPG+IEVCHWIFENDM+W  AD
Sbjct: 598 WGPRHGAFVALGSGPGKIEVCHWIFENDMTWATAD 632

Query: 68   113
           
Sbjct: 658  632

[Close]
BLAST of CU102695 vs. Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-13
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGP HGAF+ALGSGPG+IEVCHWIFENDM+W  AD
Sbjct: 595 WGPRHGAFIALGSGPGKIEVCHWIFENDMTWATAD 629

Query: 68   113
           
Sbjct: 655  629

[Close]
BLAST of CU102695 vs. Swiss-Prot
Match: PGL3_ARATH (Polygalacturonase 1 beta-like protein 3 OS=Arabidopsis thaliana GN=PGL3 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-12
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGP HGAF+ALGS PG+IEVCHWIFENDM+W +AD
Sbjct: 592 WGPSHGAFLALGSKPGRIEVCHWIFENDMNWAIAD 626

Query: 68   113
           
Sbjct: 652  626

[Close]
BLAST of CU102695 vs. TrEMBL
Match: A0A0A0LP63_CUCSA (Polygalacturonase-1 non-catalytic subunit beta OS=Cucumis sativus GN=Csa_1G005490 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-14
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD
Sbjct: 611 WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 645

Query: 68   113
           
Sbjct: 671  645

[Close]
BLAST of CU102695 vs. TrEMBL
Match: B9I388_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s08060g PE=4 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGPEHGAFVALGS PG+IEVCHWIFENDM+W +AD
Sbjct: 601 WGPEHGAFVALGSSPGKIEVCHWIFENDMTWTIAD 635

Query: 68   113
           
Sbjct: 661  635

[Close]
BLAST of CU102695 vs. TrEMBL
Match: A0A0V0IF33_SOLCH (Putative polygalacturonase non-catalytic subunit AroGP2-like (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-11
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGP HGAF+ALGSGPG+IEVCHWIFENDM+W +AD
Sbjct: 549 WGPSHGAFIALGSGPGKIEVCHWIFENDMTWTIAD 583

Query: 68   113
           
Sbjct: 609  583

[Close]
BLAST of CU102695 vs. TrEMBL
Match: V9TH77_TOBAC (Polygalacturonase isoenzyme 1 beta subunit OS=Nicotiana tabacum GN=GP1 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGP HGAFVALGSGPG+IEVCHWIFENDM+W +AD
Sbjct: 594 WGPSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 628

Query: 68   113
           
Sbjct: 654  628

[Close]
BLAST of CU102695 vs. TrEMBL
Match: M1D223_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030982 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-11
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 2 

Query: 5   IWGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 64
           +WGP+HGAF+ALGSGPG+IEVCHWIFENDM+W  AD
Sbjct: 539 LWGPKHGAFIALGSGPGKIEVCHWIFENDMTWATAD 574

Query: 65   113
           
Sbjct: 599  574

[Close]
BLAST of CU102695 vs. NCBI nr
Match: gi|449441023|ref|XP_004138283.1| (PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD
Sbjct: 611 WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 645

Query: 68   113
           
Sbjct: 671  645

[Close]
BLAST of CU102695 vs. NCBI nr
Match: gi|659105447|ref|XP_008453099.1| (PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGPEHGAFVALGS PGQIEVCHWIFENDMSW+VAD
Sbjct: 614 WGPEHGAFVALGSSPGQIEVCHWIFENDMSWSVAD 648

Query: 68   113
           
Sbjct: 674  648

[Close]
BLAST of CU102695 vs. NCBI nr
Match: gi|566197370|ref|XP_002318036.2| (hypothetical protein POPTR_0012s08060g [Populus trichocarpa])

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGPEHGAFVALGS PG+IEVCHWIFENDM+W +AD
Sbjct: 601 WGPEHGAFVALGSSPGKIEVCHWIFENDMTWTIAD 635

Query: 68   113
           
Sbjct: 661  635

[Close]
BLAST of CU102695 vs. NCBI nr
Match: gi|970029940|ref|XP_015076285.1| (PREDICTED: polygalacturonase-1 non-catalytic subunit beta [Solanum pennellii])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGP HGAFVALGSGPG+IEVCHWIFENDM+W +AD
Sbjct: 593 WGPSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 627

Query: 68   113
           
Sbjct: 653  627

[Close]
BLAST of CU102695 vs. NCBI nr
Match: gi|350538029|ref|NP_001234835.1| (polygalacturonase-1 non-catalytic subunit beta precursor [Solanum lycopersicum])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 2 

Query: 8   WGPEHGAFVALGSGPGQIEVCHWIFENDMSWNVAD 67
           WGP HGAFVALGSGPG+IEVCHWIFENDM+W +AD
Sbjct: 596 WGPSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 630

Query: 68   113
           
Sbjct: 656  630

The following BLAST results are available for this feature:
BLAST of CU102695 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GP1_SOLLC1.6e-1385.71Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE... [more]
PGL2_ARATH2.6e-1382.86Polygalacturonase 1 beta-like protein 2 OS=Arabidopsis thaliana GN=PGL2 PE=2 SV=... [more]
GP3_SOLLC3.5e-1385.71Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE... [more]
GP2_SOLLC4.5e-1382.86Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE... [more]
PGL3_ARATH2.9e-1280.00Polygalacturonase 1 beta-like protein 3 OS=Arabidopsis thaliana GN=PGL3 PE=2 SV=... [more]
BLAST of CU102695 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP63_CUCSA6.3e-14100.00Polygalacturonase-1 non-catalytic subunit beta OS=Cucumis sativus GN=Csa_1G00549... [more]
B9I388_POPTR1.3e-1185.71Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s08060g PE=4 SV=2[more]
A0A0V0IF33_SOLCH1.3e-1182.86Putative polygalacturonase non-catalytic subunit AroGP2-like (Fragment) OS=Solan... [more]
V9TH77_TOBAC1.7e-1185.71Polygalacturonase isoenzyme 1 beta subunit OS=Nicotiana tabacum GN=GP1 PE=2 SV=1[more]
M1D223_SOLTU2.3e-1180.56Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030982 PE=4 SV=1[more]
BLAST of CU102695 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441023|ref|XP_004138283.1|1.8e-14100.00PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Cucumis sativ... [more]
gi|659105447|ref|XP_008453099.1|3.5e-1394.29PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Cucumis melo][more]
gi|566197370|ref|XP_002318036.2|3.8e-1285.71hypothetical protein POPTR_0012s08060g [Populus trichocarpa][more]
gi|970029940|ref|XP_015076285.1|5.0e-1285.71PREDICTED: polygalacturonase-1 non-catalytic subunit beta [Solanum pennellii][more]
gi|350538029|ref|NP_001234835.1|5.0e-1285.71polygalacturonase-1 non-catalytic subunit beta precursor [Solanum lycopersicum][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G005490Csa1G005490gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LN2APFKNP3UI02LN2APEST
G0153496G0153496EST
G0162068G0162068EST
G0190918G0190918EST
H0009880H0009880EST