CU104827 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU104827
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 12778553 .. 12779089 (+)
Sequence length542
The following sequences are available for this feature:

transcribed_cluster sequence

AAAGGTATCAAATTGGTATTTTCTTTTTCATAAAAAGTGAATAATTGTTATTTATTAAAAATAAATACATATTTTTTTGTTGATTTTGAAAATTATTCTAGGCGAAAAACTAAGTGAGCCTAAACACGCATCCCACACCGAGCCCAACAAACAATAGCCTACAACGAATATATGAGCTCATGTTCCATTGGGCCCAAACGAACATCCCGAAACTCATGAACTGAATAGGCACGAACCGACCCGAATACGATTAGTGTTTCTTCCTCTAAAAATCTTCGTCGCCGTAGCCAAGGTCATCCTCAACCTTCTGCGCTGCGTCCTCGGCGATCTGGTCCTCCACATACTCGACGCCCTCTCCGATGGCCAATCCACCTAAAATTCCAGCAGCCGCGCCCACCGCTAGCCCCGTCCCCATCCCGAACTTGCTTTTCTTCTTCTCCTCCGGCTGCCCATAGTACGTATGTTCGCCATACGCTGGCTGTCCATAACTTCCCTGACCGTACGATGGCTGCCCGTAATTCGATTGGCCGTATGGAGGCGCT
BLAST of CU104827 vs. TrEMBL
Match: A0A0A0LBH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183350 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-17
Identity = 48/69 (69.57%), Postives = 48/69 (69.57%), Query Frame = -2

Query: 269 AYGEHTYYGQPEEKKKSKFGMGTXXXXXXXXXXXXXXXXXXXXXYVEDQIAEDAAQKVED 328
           AYGEHTYYGQPEEKKKSKFGMGT                     YVEDQIAEDAAQKVED
Sbjct: 223 AYGEHTYYGQPEEKKKSKFGMGTGLAVGAAAGILGGLAIGEGVEYVEDQIAEDAAQKVED 282

Query: 329 DLGYGDEDF 388
           DLGYGDEDF
Sbjct: 283 DLGYGDEDF 291

Query: 389 448
           
Sbjct: 343 291

Query: 449 476
           
Sbjct: 403 291

BLAST of CU104827 vs. TrEMBL
Match: A0A059DJS1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02756 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 38/76 (50.00%), Postives = 44/76 (57.89%), Query Frame = -2

Query: 269 AYGEHTYYGQPEEKKKSKFG---MGTXXXXXXXXXXXXXXXXXXXXXYVEDQIAEDAAQK 328
           AYG+   YGQPEEKKKSKFG   MGT                     ++ED+IA+DAA+K
Sbjct: 218 AYGQ---YGQPEEKKKSKFGGMGMGTGLAVGAVAGAIGGIALTEGFEHLEDKIADDAAEK 277

Query: 329 VEDDLGYGD----EDF 388
           VEDDLGY D    EDF
Sbjct: 278 VEDDLGYDDVGEEEDF 290

Query: 389 448
           
Sbjct: 338 290

Query: 449 476
           
Sbjct: 398 290

BLAST of CU104827 vs. NCBI nr
Match: gi|778679668|ref|XP_011651176.1| (PREDICTED: uncharacterized protein LOC101213996 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-16
Identity = 48/69 (69.57%), Postives = 48/69 (69.57%), Query Frame = -2

Query: 269 AYGEHTYYGQPEEKKKSKFGMGTXXXXXXXXXXXXXXXXXXXXXYVEDQIAEDAAQKVED 328
           AYGEHTYYGQPEEKKKSKFGMGT                     YVEDQIAEDAAQKVED
Sbjct: 223 AYGEHTYYGQPEEKKKSKFGMGTGLAVGAAAGILGGLAIGEGVEYVEDQIAEDAAQKVED 282

Query: 329 DLGYGDEDF 388
           DLGYGDEDF
Sbjct: 283 DLGYGDEDF 291

Query: 389 448
           
Sbjct: 343 291

Query: 449 476
           
Sbjct: 403 291

BLAST of CU104827 vs. NCBI nr
Match: gi|659077556|ref|XP_008439269.1| (PREDICTED: zinc finger matrin-type protein CG9776 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 8.8e-13
Identity = 43/71 (60.56%), Postives = 47/71 (66.20%), Query Frame = -2

Query: 269 AYGEHTYYGQPEEKKKSKFGMG--TXXXXXXXXXXXXXXXXXXXXXYVEDQIAEDAAQKV 328
           AYGE TYYGQPEEKKKSK+GMG  T                     YVED+IAEDAA++V
Sbjct: 223 AYGEQTYYGQPEEKKKSKYGMGMGTGLAVGAAAGILGGLAIGEGVEYVEDKIAEDAAERV 282

Query: 329 EDDLGYGDEDF 388
           EDDLGYGDEDF
Sbjct: 283 EDDLGYGDEDF 293

Query: 389 448
           
Sbjct: 343 293

Query: 449 476
           
Sbjct: 403 293

BLAST of CU104827 vs. NCBI nr
Match: gi|743853074|ref|XP_010940561.1| (PREDICTED: transcription elongation factor SPT5 [Elaeis guineensis])

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-06
Identity = 35/71 (49.30%), Postives = 39/71 (54.93%), Query Frame = -2

Query: 278 AYGEHTYYGQP-----EEKKKSKFGMGTXXXXXXXXXXXXXXXXXXXXXYVEDQIAEDAA 337
           +YG    YG P     EEKKKSKFGMGT                     YVED+IA+DAA
Sbjct: 207 SYGAAGSYGAPPVAPVEEKKKSKFGMGTGLAVGAAAGVLGGLALAEGIDYVEDKIADDAA 266

Query: 338 QKVEDDLGYGD 397
           +KVEDDLGY D
Sbjct: 267 EKVEDDLGYDD 277

Query: 398 457
           
Sbjct: 327 277

Query: 458 476
           
Sbjct: 387 277

BLAST of CU104827 vs. NCBI nr
Match: gi|629126230|gb|KCW90655.1| (hypothetical protein EUGRSUZ_A02756 [Eucalyptus grandis])

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-06
Identity = 38/76 (50.00%), Postives = 44/76 (57.89%), Query Frame = -2

Query: 269 AYGEHTYYGQPEEKKKSKFG---MGTXXXXXXXXXXXXXXXXXXXXXYVEDQIAEDAAQK 328
           AYG+   YGQPEEKKKSKFG   MGT                     ++ED+IA+DAA+K
Sbjct: 218 AYGQ---YGQPEEKKKSKFGGMGMGTGLAVGAVAGAIGGIALTEGFEHLEDKIADDAAEK 277

Query: 329 VEDDLGYGD----EDF 388
           VEDDLGY D    EDF
Sbjct: 278 VEDDLGYDDVGEEEDF 290

Query: 389 448
           
Sbjct: 338 290

Query: 449 476
           
Sbjct: 398 290

BLAST of CU104827 vs. NCBI nr
Match: gi|702250087|ref|XP_010060582.1| (PREDICTED: uncharacterized protein LOC104448451 [Eucalyptus grandis])

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-06
Identity = 38/76 (50.00%), Postives = 44/76 (57.89%), Query Frame = -2

Query: 269 AYGEHTYYGQPEEKKKSKFG---MGTXXXXXXXXXXXXXXXXXXXXXYVEDQIAEDAAQK 328
           AYG+   YGQPEEKKKSKFG   MGT                     ++ED+IA+DAA+K
Sbjct: 225 AYGQ---YGQPEEKKKSKFGGMGMGTGLAVGAVAGAIGGIALTEGFEHLEDKIADDAAEK 284

Query: 329 VEDDLGYGD----EDF 388
           VEDDLGY D    EDF
Sbjct: 285 VEDDLGYDDVGEEEDF 297

Query: 389 448
           
Sbjct: 345 297

Query: 449 476
           
Sbjct: 405 297

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LBH6_CUCSA3.1e-1769.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183350 PE=4 SV=1[more]
A0A059DJS1_EUCGR1.1e-0650.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02756 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778679668|ref|XP_011651176.1|1.0e-1669.57PREDICTED: uncharacterized protein LOC101213996 [Cucumis sativus][more]
gi|659077556|ref|XP_008439269.1|8.8e-1360.56PREDICTED: zinc finger matrin-type protein CG9776 [Cucumis melo][more]
gi|743853074|ref|XP_010940561.1|2.7e-0649.30PREDICTED: transcription elongation factor SPT5 [Elaeis guineensis][more]
gi|629126230|gb|KCW90655.1|3.6e-0650.00hypothetical protein EUGRSUZ_A02756 [Eucalyptus grandis][more]
gi|702250087|ref|XP_010060582.1|3.6e-0650.00PREDICTED: uncharacterized protein LOC104448451 [Eucalyptus grandis][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G183350Csa3G183350gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0004044G0004044EST
G0004054G0004054EST
G0005590G0005590EST
G0041666G0041666EST
G0049606G0049606EST
G0057911G0057911EST
G0062490G0062490EST
G0089964G0089964EST
G0100419G0100419EST
G0117820G0117820EST
G0119440G0119440EST
G0129783G0129783EST
G0156907G0156907EST
G0159906G0159906EST
G0176045G0176045EST
G0176809G0176809EST
H0033804H0033804EST
H0042635H0042635EST
H0047172H0047172EST
H0051997H0051997EST
H0057056H0057056EST
H0071517H0071517EST
H0071606H0071606EST
H0073778H0073778EST
H0077067H0077067EST
H0100517H0100517EST
H0109198H0109198EST
H0122892H0122892EST
H0141145H0141145EST
H0145179H0145179EST
H0147058H0147058EST
H0150568H0150568EST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32246FAMILY NOT NAMEDcoord: 2..92
score: 3.0
NoneNo IPR availablePANTHERPTHR32246:SF17SUBFAMILY NOT NAMEDcoord: 2..92
score: 3.0