CU111751 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU111751
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	E3 ubiquitin-protein ligase
Location	Chr4 : 10981427 .. 10982497 (-)
Sequence length	729

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTATCATAAGTTTCTACGGAACCAATTATGAGTTCTTCAAACAAGTCCCTCTAGCAATGACACTTCTTCTTTTTTAATTAAATCTCAGAGATGATTGTATGAGTACCATAATAGAATTCAGAGAGAAGGGGATGTATCAGCAACCCAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTACATCGATAGATTCTCAACCAGCAACTTCTCGTCCTGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGCTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTTGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAATTGCTGCCCTACCTGTCGGCATGAGCTTGGGAACATAAAGTGCCTAGCACTGGAAAAGGTGGCCGAGTCCCTTGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACACGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCATGTAACTGGTGACATTCCATCCCTTGTCATGCATCTCAAGGATGATCACGAGGTGGATATGCATGATGGGTGTTCCTTCAGTCATAGATATGTCAAATCCAATCCCCAA

Library


Library category	ESTs
fruit (8DPP) library	2
hermaphrodite flower library	1
Cucumber leaf library	1

Homology

[Close]

BLAST of CU111751 vs. Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.5e-71
Identity = 123/186 (66.13%), Postives = 145/186 (77.96%), Query Frame = 1


Query: 181 SFCKEVTELRLTSIDSQPATSRPEFKGVTFRKASTGGFAR----SRNDVHELLDCTVCMN 240
           S  KEV E   T +D +  T++ E       K  + G  +    S N V+ELL+C VC N
Sbjct: 6   SALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGIGKYGIHSNNGVYELLECPVCTN 65

Query: 241 LMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAESLELPCVYQNLGC 300
           LM+PPI+QC NGHTLCS+CK RVQN CPTCR+ELGNI+CLALEKVAESLE+PC YQNLGC
Sbjct: 66  LMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGC 125

Query: 301 IDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHR 360
            D+FPYYSKLKHE++C++RPY CPYAG EC VTGDIP+LV+HLKDDH+VDMHDGC+F+HR
Sbjct: 126 HDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGCTFNHR 185

Query: 361 YVKSNP 420
           YVKSNP
Sbjct: 186 YVKSNP 191

Query: 421  480
           
Sbjct: 246  191

Query: 481  540
           
Sbjct: 306  191

Query: 541  600
           
Sbjct: 366  191

Query: 601  660
           
Sbjct: 426  191

Query: 661  720
           
Sbjct: 486  191

Query: 721  727
           
Sbjct: 546  191

[Close]

BLAST of CU111751 vs. Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.3e-69
Identity = 121/183 (66.12%), Postives = 141/183 (77.05%), Query Frame = 1


Query: 181 SFCKEVTELRLTSIDSQPATSRPEFKGVTFRKASTG-GFARSRNDVHELLDCTVCMNLMH 240
           S  KE  E   T +D +   ++ E      +  S   G   S N V+ELL+C VC NLM+
Sbjct: 6   SALKEALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGKFHSSNGVYELLECPVCTNLMY 65

Query: 241 PPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAESLELPCVYQNLGCIDM 300
           PPI+QC NGHTLCSSCK RVQN CPTCR+ELGNI+CLALEKVAESLE+PC YQNLGC D+
Sbjct: 66  PPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCQDI 125

Query: 301 FPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYVK 360
           FPYYSKLKHE++C++R Y+CPYAG EC VTGDIP+LV HLKDDH+VDMHDGC+F+HRYVK
Sbjct: 126 FPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCTFNHRYVK 185

Query: 361 SNP 420
           SNP
Sbjct: 186 SNP 188

Query: 421  480
           
Sbjct: 246  188

Query: 481  540
           
Sbjct: 306  188

Query: 541  600
           
Sbjct: 366  188

Query: 601  660
           
Sbjct: 426  188

Query: 661  720
           
Sbjct: 486  188

Query: 721  727
           
Sbjct: 546  188

[Close]

BLAST of CU111751 vs. Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-63
Identity = 106/151 (70.20%), Postives = 123/151 (81.46%), Query Frame = 1


Query: 277 ASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGN 336
           A+  G   +   VHELL+C VC N M+PPI+QC NGHTLCS+CKARV N CPTCR ELG+
Sbjct: 45  AAASGLLPTTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGD 104

Query: 337 IKCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDI 396
           I+CLALEKVAESLELPC + +LGC ++FPYYSKLKHE  C +RPY+CPYAG EC VTGDI
Sbjct: 105 IRCLALEKVAESLELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDI 164

Query: 397 PSLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ 456
           P LV HL+DDH+VDMH GC+F+HRYVKSNP+
Sbjct: 165 PFLVAHLRDDHKVDMHSGCTFNHRYVKSNPR 195

Query: 457  516
           
Sbjct: 225  195

Query: 517  576
           
Sbjct: 285  195

Query: 577  636
           
Sbjct: 345  195

Query: 637  696
           
Sbjct: 405  195

Query: 697  730
           
Sbjct: 465  195

[Close]

BLAST of CU111751 vs. Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 236.1 bits (601), Expect = 4.0e-61
Identity = 101/139 (72.66%), Postives = 116/139 (83.45%), Query Frame = 1


Query: 313 VHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAES 372
           V+ELL+C VC N M+PPI+QC NGHTLCS+CK+RV N CPTCR ELG+I+CLALEKVAES
Sbjct: 40  VYELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVAES 99

Query: 373 LELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHE 432
           LELPC Y NLGC+ +FPYYSKLKHE  C +RPY+CPYAG EC   GDI  LV HL+DDH+
Sbjct: 100 LELPCKYYNLGCLGIFPYYSKLKHESQCNFRPYSCPYAGSECAAVGDITFLVAHLRDDHK 159

Query: 433 VDMHDGCSFSHRYVKSNPQ 492
           VDMH GC+F+HRYVKSNP+
Sbjct: 160 VDMHTGCTFNHRYVKSNPR 178

Query: 493  552
           
Sbjct: 220  178

Query: 553  612
           
Sbjct: 280  178

Query: 613  672
           
Sbjct: 340  178

Query: 673  730
           
Sbjct: 400  178

[Close]

BLAST of CU111751 vs. Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.9e-59
Identity = 99/139 (71.22%), Postives = 115/139 (82.73%), Query Frame = 1


Query: 313 VHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAES 372
           V+ELL+C VC   M+PPI+QC NGHTLCS+CK RV N CPTCR ELG+I+CLALEKVAES
Sbjct: 58  VYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAES 117

Query: 373 LELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHE 432
           LELPC + NLGC ++FPYYSKLKHE  C +RPY+CPYAG EC + GDIP LV HL+DDH+
Sbjct: 118 LELPCKFYNLGCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHK 177

Query: 433 VDMHDGCSFSHRYVKSNPQ 492
           VDMH G +F+HRYVKSNP+
Sbjct: 178 VDMHAGSTFNHRYVKSNPR 196

Query: 493  552
           
Sbjct: 238  196

Query: 553  612
           
Sbjct: 298  196

Query: 613  672
           
Sbjct: 358  196

Query: 673  730
           
Sbjct: 418  196

[Close]

BLAST of CU111751 vs. TrEMBL
Match: A0A0A0KWV9_CUCSA (E3 ubiquitin-protein ligase OS=Cucumis sativus GN=Csa_4G285710 PE=3 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 6.8e-124
Identity = 209/210 (99.52%), Postives = 210/210 (100.00%), Query Frame = 1


Query: 100 MSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKA 159
           MSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKA
Sbjct: 1   MSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKA 60

Query: 160 STGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNI 219
           STGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNI
Sbjct: 61  STGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNI 120

Query: 220 KCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIP 279
           +CLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIP
Sbjct: 121 RCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIP 180

Query: 280 SLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ 339
           SLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ
Sbjct: 181 SLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ 210

Query: 340  399
           
Sbjct: 241  210

Query: 400  459
           
Sbjct: 301  210

Query: 460  519
           
Sbjct: 361  210

Query: 520  579
           
Sbjct: 421  210

Query: 580  639
           
Sbjct: 481  210

Query: 640  699
           
Sbjct: 541  210

Query: 700  730
           
Sbjct: 601  210

[Close]

BLAST of CU111751 vs. TrEMBL
Match: A0A0B0MKI9_GOSAR (E3 ubiquitin-protein ligase OS=Gossypium arboreum GN=F383_21228 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 6.9e-76
Identity = 136/184 (73.91%), Postives = 153/184 (83.15%), Query Frame = 1


Query: 187 CKEVTELRLTSIDSQPATSRPEFKGVTFRKAST--GGF--ARSRNDVHELLDCTVCMNLM 246
           CK+V E R+T  +   ATS  E +G   RKA+T  GG   A S NDVHELL+C VC+NLM
Sbjct: 8   CKDVIESRITFAEYDMATSSAELRGSPLRKAATSLGGNLGATSTNDVHELLECPVCLNLM 67

Query: 247 HPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAESLELPCVYQNLGCID 306
           +PPIYQC NGHT+CS CKARV N CPTCR+ELGNI+CLALEKVAESLELPC YQ LGC D
Sbjct: 68  YPPIYQCPNGHTVCSICKARVHNSCPTCRNELGNIRCLALEKVAESLELPCRYQILGCHD 127

Query: 307 MFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYV 366
           +FPYYSKLKHEKNC+YRPYNCPYAG EC VTGDIP LVMHLK+DH+VDMHDGC+F+HRYV
Sbjct: 128 IFPYYSKLKHEKNCRYRPYNCPYAGAECSVTGDIPFLVMHLKNDHKVDMHDGCTFNHRYV 187

Query: 367 KSNP 426
           KSNP
Sbjct: 188 KSNP 191

Query: 427  486
           
Sbjct: 248  191

Query: 487  546
           
Sbjct: 308  191

Query: 547  606
           
Sbjct: 368  191

Query: 607  666
           
Sbjct: 428  191

Query: 667  726
           
Sbjct: 488  191

[Close]

BLAST of CU111751 vs. TrEMBL
Match: A0A0D2UWG9_GOSRA (E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_011G212100 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.0e-75
Identity = 133/184 (72.28%), Postives = 152/184 (82.61%), Query Frame = 1


Query: 187 CKEVTELRLTSIDSQPATSRPEFKGVTFRKAST---GGF-ARSRNDVHELLDCTVCMNLM 246
           CKEV E R+T  D   ATS  + +G   RK +T   G   + S NDVHELL+C VC+NLM
Sbjct: 8   CKEVIESRVTFSDYDMATSSADLRGSPLRKTATALSGNLGSTSMNDVHELLECPVCVNLM 67

Query: 247 HPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAESLELPCVYQNLGCID 306
           +PPIYQC NGHT+CS+CK RV NCCPTCR+ELGNI+CLALEKVAESLELPC YQ LGC D
Sbjct: 68  YPPIYQCPNGHTVCSTCKTRVHNCCPTCRNELGNIRCLALEKVAESLELPCSYQILGCND 127

Query: 307 MFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYV 366
           +FPYYSKLKHEKNC+YRPY+CPYAG EC VTGDIP LVMHLK+DH+VDMHDGC+F+HRYV
Sbjct: 128 IFPYYSKLKHEKNCRYRPYSCPYAGAECSVTGDIPFLVMHLKNDHKVDMHDGCTFNHRYV 187

Query: 367 KSNP 426
           KSNP
Sbjct: 188 KSNP 191

Query: 427  486
           
Sbjct: 248  191

Query: 487  546
           
Sbjct: 308  191

Query: 547  606
           
Sbjct: 368  191

Query: 607  666
           
Sbjct: 428  191

Query: 667  726
           
Sbjct: 488  191

[Close]

BLAST of CU111751 vs. TrEMBL
Match: A0A0D2V8W6_GOSRA (E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_013G005700 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.6e-75
Identity = 134/184 (72.83%), Postives = 153/184 (83.15%), Query Frame = 1


Query: 187 CKEVTELRLTSIDSQPATSRPEFKGVTFRKAST--GGF--ARSRNDVHELLDCTVCMNLM 246
           CK+V E R+T  +   ATS  E +G   RKA+T  GG   A S NDVHELL+C VC+NLM
Sbjct: 8   CKDVIESRITFAEYDMATSSAELRGSPLRKAATSLGGNLGATSTNDVHELLECPVCLNLM 67

Query: 247 HPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAESLELPCVYQNLGCID 306
           +PPIYQC NGHT+CS CKARV N CPTCR+ELGNI+CLALEKVAESLELPC YQ LGC D
Sbjct: 68  YPPIYQCPNGHTVCSICKARVHNSCPTCRNELGNIRCLALEKVAESLELPCRYQILGCHD 127

Query: 307 MFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYV 366
           +FPYYSKLKHEKNC+YRPY+CPYAG EC VTGDIP LV+HLK+DH+VDMHDGC+F+HRYV
Sbjct: 128 IFPYYSKLKHEKNCRYRPYHCPYAGAECSVTGDIPFLVVHLKNDHKVDMHDGCTFNHRYV 187

Query: 367 KSNP 426
           KSNP
Sbjct: 188 KSNP 191

Query: 427  486
           
Sbjct: 248  191

Query: 487  546
           
Sbjct: 308  191

Query: 547  606
           
Sbjct: 368  191

Query: 607  666
           
Sbjct: 428  191

Query: 667  726
           
Sbjct: 488  191

[Close]

BLAST of CU111751 vs. TrEMBL
Match: A0A0D2W1I0_GOSRA (E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_013G005700 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.6e-75
Identity = 134/184 (72.83%), Postives = 153/184 (83.15%), Query Frame = 1


Query: 187 CKEVTELRLTSIDSQPATSRPEFKGVTFRKAST--GGF--ARSRNDVHELLDCTVCMNLM 246
           CK+V E R+T  +   ATS  E +G   RKA+T  GG   A S NDVHELL+C VC+NLM
Sbjct: 8   CKDVIESRITFAEYDMATSSAELRGSPLRKAATSLGGNLGATSTNDVHELLECPVCLNLM 67

Query: 247 HPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAESLELPCVYQNLGCID 306
           +PPIYQC NGHT+CS CKARV N CPTCR+ELGNI+CLALEKVAESLELPC YQ LGC D
Sbjct: 68  YPPIYQCPNGHTVCSICKARVHNSCPTCRNELGNIRCLALEKVAESLELPCRYQILGCHD 127

Query: 307 MFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYV 366
           +FPYYSKLKHEKNC+YRPY+CPYAG EC VTGDIP LV+HLK+DH+VDMHDGC+F+HRYV
Sbjct: 128 IFPYYSKLKHEKNCRYRPYHCPYAGAECSVTGDIPFLVVHLKNDHKVDMHDGCTFNHRYV 187

Query: 367 KSNP 426
           KSNP
Sbjct: 188 KSNP 191

Query: 427  486
           
Sbjct: 248  191

Query: 487  546
           
Sbjct: 308  191

Query: 547  606
           
Sbjct: 368  191

Query: 607  666
           
Sbjct: 428  191

Query: 667  726
           
Sbjct: 488  191

[Close]

BLAST of CU111751 vs. NCBI nr
Match: gi|700198937|gb|KGN54095.1| (hypothetical protein Csa_4G285710 [Cucumis sativus])

HSP 1 Score: 452.6 bits (1163), Expect = 4.4e-124
Identity = 209/210 (99.52%), Postives = 210/210 (100.00%), Query Frame = 1


Query: 100 MSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKA 159
           MSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKA
Sbjct: 1   MSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKA 60

Query: 160 STGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNI 219
           STGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNI
Sbjct: 61  STGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNI 120

Query: 220 KCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIP 279
           +CLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIP
Sbjct: 121 RCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIP 180

Query: 280 SLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ 339
           SLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ
Sbjct: 181 SLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ 210

Query: 340  399
           
Sbjct: 241  210

Query: 400  459
           
Sbjct: 301  210

Query: 460  519
           
Sbjct: 361  210

Query: 520  579
           
Sbjct: 421  210

Query: 580  639
           
Sbjct: 481  210

Query: 640  699
           
Sbjct: 541  210

Query: 700  730
           
Sbjct: 601  210

[Close]

BLAST of CU111751 vs. NCBI nr
Match: gi|659097725|ref|XP_008449780.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Cucumis melo])

HSP 1 Score: 447.6 bits (1150), Expect = 1.4e-122
Identity = 207/210 (98.57%), Postives = 208/210 (99.05%), Query Frame = 1


Query: 100 MSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKA 159
           MSTIIEFREKGMYQQ KSREEHASSAASFCKEVTEL LTSIDSQPATSRPEFKGVTFRKA
Sbjct: 1   MSTIIEFREKGMYQQQKSREEHASSAASFCKEVTELHLTSIDSQPATSRPEFKGVTFRKA 60

Query: 160 STGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNI 219
           STGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNI
Sbjct: 61  STGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNI 120

Query: 220 KCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIP 279
           +CLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIP
Sbjct: 121 RCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIP 180

Query: 280 SLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ 339
           SLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ
Sbjct: 181 SLVMHLKDDHEVDMHDGCSFSHRYVKSNPQ 210

Query: 340  399
           
Sbjct: 241  210

Query: 400  459
           
Sbjct: 301  210

Query: 460  519
           
Sbjct: 361  210

Query: 520  579
           
Sbjct: 421  210

Query: 580  639
           
Sbjct: 481  210

Query: 640  699
           
Sbjct: 541  210

Query: 700  730
           
Sbjct: 601  210

[Close]

BLAST of CU111751 vs. NCBI nr
Match: gi|728812525|gb|KHG00872.1| (E3 ubiquitin-protein ligase SINAT2 -like protein [Gossypium arboreum])

HSP 1 Score: 293.5 bits (750), Expect = 3.4e-76
Identity = 136/184 (73.91%), Postives = 153/184 (83.15%), Query Frame = 1


Query: 187 CKEVTELRLTSIDSQPATSRPEFKGVTFRKAST--GGF--ARSRNDVHELLDCTVCMNLM 246
           CK+V E R+T  +   ATS  E +G   RKA+T  GG   A S NDVHELL+C VC+NLM
Sbjct: 8   CKDVIESRITFAEYDMATSSAELRGSPLRKAATSLGGNLGATSTNDVHELLECPVCLNLM 67

Query: 247 HPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAESLELPCVYQNLGCID 306
           +PPIYQC NGHT+CS CKARV N CPTCR+ELGNI+CLALEKVAESLELPC YQ LGC D
Sbjct: 68  YPPIYQCPNGHTVCSICKARVHNSCPTCRNELGNIRCLALEKVAESLELPCRYQILGCHD 127

Query: 307 MFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYV 366
           +FPYYSKLKHEKNC+YRPYNCPYAG EC VTGDIP LVMHLK+DH+VDMHDGC+F+HRYV
Sbjct: 128 IFPYYSKLKHEKNCRYRPYNCPYAGAECSVTGDIPFLVMHLKNDHKVDMHDGCTFNHRYV 187

Query: 367 KSNP 426
           KSNP
Sbjct: 188 KSNP 191

Query: 427  486
           
Sbjct: 248  191

Query: 487  546
           
Sbjct: 308  191

Query: 547  606
           
Sbjct: 368  191

Query: 607  666
           
Sbjct: 428  191

Query: 667  726
           
Sbjct: 488  191

[Close]

BLAST of CU111751 vs. NCBI nr
Match: gi|823248750|ref|XP_012457030.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Gossypium raimondii])

HSP 1 Score: 292.0 bits (746), Expect = 9.8e-76
Identity = 133/184 (72.28%), Postives = 152/184 (82.61%), Query Frame = 1


Query: 187 CKEVTELRLTSIDSQPATSRPEFKGVTFRKAST---GGF-ARSRNDVHELLDCTVCMNLM 246
           CKEV E R+T  D   ATS  + +G   RK +T   G   + S NDVHELL+C VC+NLM
Sbjct: 8   CKEVIESRVTFSDYDMATSSADLRGSPLRKTATALSGNLGSTSMNDVHELLECPVCVNLM 67

Query: 247 HPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAESLELPCVYQNLGCID 306
           +PPIYQC NGHT+CS+CK RV NCCPTCR+ELGNI+CLALEKVAESLELPC YQ LGC D
Sbjct: 68  YPPIYQCPNGHTVCSTCKTRVHNCCPTCRNELGNIRCLALEKVAESLELPCSYQILGCND 127

Query: 307 MFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYV 366
           +FPYYSKLKHEKNC+YRPY+CPYAG EC VTGDIP LVMHLK+DH+VDMHDGC+F+HRYV
Sbjct: 128 IFPYYSKLKHEKNCRYRPYSCPYAGAECSVTGDIPFLVMHLKNDHKVDMHDGCTFNHRYV 187

Query: 367 KSNP 426
           KSNP
Sbjct: 188 KSNP 191

Query: 427  486
           
Sbjct: 248  191

Query: 487  546
           
Sbjct: 308  191

Query: 547  606
           
Sbjct: 368  191

Query: 607  666
           
Sbjct: 428  191

Query: 667  726
           
Sbjct: 488  191

[Close]

BLAST of CU111751 vs. NCBI nr
Match: gi|823264592|ref|XP_012465045.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Gossypium raimondii])

HSP 1 Score: 290.0 bits (741), Expect = 3.7e-75
Identity = 134/184 (72.83%), Postives = 153/184 (83.15%), Query Frame = 1


Query: 187 CKEVTELRLTSIDSQPATSRPEFKGVTFRKAST--GGF--ARSRNDVHELLDCTVCMNLM 246
           CK+V E R+T  +   ATS  E +G   RKA+T  GG   A S NDVHELL+C VC+NLM
Sbjct: 8   CKDVIESRITFAEYDMATSSAELRGSPLRKAATSLGGNLGATSTNDVHELLECPVCLNLM 67

Query: 247 HPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIKCLALEKVAESLELPCVYQNLGCID 306
           +PPIYQC NGHT+CS CKARV N CPTCR+ELGNI+CLALEKVAESLELPC YQ LGC D
Sbjct: 68  YPPIYQCPNGHTVCSICKARVHNSCPTCRNELGNIRCLALEKVAESLELPCRYQILGCHD 127

Query: 307 MFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYV 366
           +FPYYSKLKHEKNC+YRPY+CPYAG EC VTGDIP LV+HLK+DH+VDMHDGC+F+HRYV
Sbjct: 128 IFPYYSKLKHEKNCRYRPYHCPYAGAECSVTGDIPFLVVHLKNDHKVDMHDGCTFNHRYV 187

Query: 367 KSNP 426
           KSNP
Sbjct: 188 KSNP 191

Query: 427  486
           
Sbjct: 248  191

Query: 487  546
           
Sbjct: 308  191

Query: 547  606
           
Sbjct: 368  191

Query: 607  666
           
Sbjct: 428  191

Query: 667  726
           
Sbjct: 488  191

The following BLAST results are available for this feature:

BLAST of CU111751 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SINA2_ARATH	1.5e-71	66.13	E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1	[more]
SINA1_ARATH	2.3e-69	66.12	Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE...	[more]
SINA3_ARATH	1.5e-63	70.20	E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1	[more]
SINA5_ARATH	4.0e-61	72.66	E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2	[more]
SINA4_ARATH	4.9e-59	71.22	E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1	[more]

BLAST of CU111751 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWV9_CUCSA	6.8e-124	99.52	E3 ubiquitin-protein ligase OS=Cucumis sativus GN=Csa_4G285710 PE=3 SV=1	[more]
A0A0B0MKI9_GOSAR	6.9e-76	73.91	E3 ubiquitin-protein ligase OS=Gossypium arboreum GN=F383_21228 PE=3 SV=1	[more]
A0A0D2UWG9_GOSRA	2.0e-75	72.28	E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_011G212100 PE=3 SV=1	[more]
A0A0D2V8W6_GOSRA	7.6e-75	72.83	E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_013G005700 PE=3 SV=1	[more]
A0A0D2W1I0_GOSRA	7.6e-75	72.83	E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_013G005700 PE=3 SV=1	[more]

BLAST of CU111751 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198937\|gb\|KGN54095.1\|	4.4e-124	99.52	hypothetical protein Csa_4G285710 [Cucumis sativus]	[more]
gi\|659097725\|ref\|XP_008449780.1\|	1.4e-122	98.57	PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Cucumis melo]	[more]
gi\|728812525\|gb\|KHG00872.1\|	3.4e-76	73.91	E3 ubiquitin-protein ligase SINAT2 -like protein [Gossypium arboreum]	[more]
gi\|823248750\|ref\|XP_012457030.1\|	9.8e-76	72.28	PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Gossypium raimondii]	[more]
gi\|823264592\|ref\|XP_012465045.1\|	3.7e-75	72.83	PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR004162	SINA-like
IPR008974	TRAF-like
IPR013010	Znf_SIAH
IPR013083	Znf_RING/FYVE/PHD
IPR013323	SIAH-type domain
IPR018121	7-in-absentia-prot_TRAF-dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0004842	ubiquitin-protein transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process
GO:0007275	multicellular organism development
GO:0016567	protein ubiquitination

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G285710	Csa4G285710	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OK3MV	FKNP3UI02OK3MV	EST
FKNP3UI02OYCER	FKNP3UI02OYCER	EST
H0183249	H0183249	EST
RG7_B06	RG7_B06	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 67..103 score: 9
IPR004162	E3 ubiquitin-protein ligase SIN-like	PANTHER	PTHR10315	SEVEN IN ABSENTIA HOMOLOG	coord: 57..199 score: 2.4
IPR008974	TRAF-like	unknown	SSF49599	TRAF domain-like	coord: 120..195 score: 7.19
IPR013010	Zinc finger, SIAH-type	PROFILE	PS51081	ZF_SIAH	coord: 120..180 score: 13
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 55..123 score: 1.
IPR013323	SIAH-type domain	GENE3D	G3DSA:3.90.890.10		coord: 124..175 score: 1.9
IPR018121	Seven-in-absentia protein, TRAF-like domain	PFAM	PF03145	Sina	coord: 109..198 score: 5.2
None	No IPR available	PANTHER	PTHR10315:SF45	E3 UBIQUITIN-PROTEIN LIGASE	coord: 57..199 score: 2.4
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 49..107 score: 2.0