CU117691 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU117691
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDNA polymerase epsilon subunit 2
LocationChr1 : 15971306 .. 15971593 (+)
Sequence length289
The following sequences are available for this feature:

transcribed_cluster sequence

GATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTTGTGGCATATCGTCCATGCAATCAAGAAGTTGAACTGTCTGCCCTGTAAATTATTACAAAGTTTAGGCCAGATTCAAGCGGGCACACTCCTTTATGCAGCATAACAATTCGTTTAGAACATGAATGAGAAATCCTATAGCATCATTCTTTATCTTGGGAGTTGCACTATTCTTTATCTTGGGGAGTTGCACTGGTGCACACCAAGAATTACCACTAGCTAGAATCTAACTCTATGCCGAAGAAG
BLAST of CU117691 vs. Swiss-Prot
Match: DPB2_ARATH (DNA polymerase epsilon subunit B OS=Arabidopsis thaliana GN=DPB2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-07
Identity = 25/29 (86.21%), Postives = 24/29 (82.76%), Query Frame = 2

Query: 5   TCFNPGSFTNDSTFVAYRPCNQEVELSAL 64
           TCFNPGSF+ DSTFVAYRP  QEVELSAL
Sbjct: 498 TCFNPGSFSTDSTFVAYRPSTQEVELSAL 526

Query: 65  92
           
Sbjct: 558 526

BLAST of CU117691 vs. TrEMBL
Match: A0A0A0LX08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G435200 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           ITCFNPGSFTNDSTFVAYRPCNQEVELSAL
Sbjct: 271 ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 300

Query: 62  92
           
Sbjct: 331 300

BLAST of CU117691 vs. TrEMBL
Match: M1D2B5_SOLTU (DNA polymerase epsilon subunit 2 OS=Solanum tuberosum GN=PGSC0003DMG400031043 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           +TCFNPGSF+ND TFVAYRPCNQEVELSAL
Sbjct: 500 VTCFNPGSFSNDGTFVAYRPCNQEVELSAL 529

Query: 62  92
           
Sbjct: 560 529

BLAST of CU117691 vs. TrEMBL
Match: M1D2B7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031043 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           +TCFNPGSF+ND TFVAYRPCNQEVELSAL
Sbjct: 78  VTCFNPGSFSNDGTFVAYRPCNQEVELSAL 107

Query: 62  92
           
Sbjct: 138 107

BLAST of CU117691 vs. TrEMBL
Match: M1D2B3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031043 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           +TCFNPGSF+ND TFVAYRPCNQEVELSAL
Sbjct: 400 VTCFNPGSFSNDGTFVAYRPCNQEVELSAL 429

Query: 62  92
           
Sbjct: 460 429

BLAST of CU117691 vs. TrEMBL
Match: A0A0V0GIJ1_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           +TCFNPGSF+ND TFVAYRPCNQEVELSAL
Sbjct: 80  VTCFNPGSFSNDGTFVAYRPCNQEVELSAL 109

Query: 62  92
           
Sbjct: 140 109

BLAST of CU117691 vs. NCBI nr
Match: gi|778660923|ref|XP_011657177.1| (PREDICTED: DNA polymerase epsilon subunit 2 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-09
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           ITCFNPGSFTNDSTFVAYRPCNQEVELSAL
Sbjct: 499 ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 528

Query: 62  92
           
Sbjct: 559 528

BLAST of CU117691 vs. NCBI nr
Match: gi|700210428|gb|KGN65524.1| (hypothetical protein Csa_1G435200 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-09
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           ITCFNPGSFTNDSTFVAYRPCNQEVELSAL
Sbjct: 271 ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 300

Query: 62  92
           
Sbjct: 331 300

BLAST of CU117691 vs. NCBI nr
Match: gi|659066275|ref|XP_008463560.1| (PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 2 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-09
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           ITCFNPGSFTNDSTFVAYRPCNQEVELSAL
Sbjct: 500 ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 529

Query: 62  92
           
Sbjct: 560 529

BLAST of CU117691 vs. NCBI nr
Match: gi|970013889|ref|XP_015067925.1| (PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Solanum pennellii])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           +TCFNPGSF+ND TFVAYRPCNQEVELSAL
Sbjct: 500 VTCFNPGSFSNDGTFVAYRPCNQEVELSAL 529

Query: 62  92
           
Sbjct: 560 529

BLAST of CU117691 vs. NCBI nr
Match: gi|460379267|ref|XP_004235385.1| (PREDICTED: DNA polymerase epsilon subunit 2 [Solanum lycopersicum])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2

Query: 2   ITCFNPGSFTNDSTFVAYRPCNQEVELSAL 61
           +TCFNPGSF+ND TFVAYRPCNQEVELSAL
Sbjct: 500 VTCFNPGSFSNDGTFVAYRPCNQEVELSAL 529

Query: 62  92
           
Sbjct: 560 529

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DPB2_ARATH3.8e-0786.21DNA polymerase epsilon subunit B OS=Arabidopsis thaliana GN=DPB2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LX08_CUCSA1.4e-08100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G435200 PE=4 SV=1[more]
M1D2B5_SOLTU1.6e-0790.00DNA polymerase epsilon subunit 2 OS=Solanum tuberosum GN=PGSC0003DMG400031043 PE... [more]
M1D2B7_SOLTU1.6e-0790.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031043 PE=4 SV=1[more]
M1D2B3_SOLTU1.6e-0790.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031043 PE=4 SV=1[more]
A0A0V0GIJ1_SOLCH1.6e-0790.00Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778660923|ref|XP_011657177.1|9.1e-09100.00PREDICTED: DNA polymerase epsilon subunit 2 [Cucumis sativus][more]
gi|700210428|gb|KGN65524.1|9.1e-09100.00hypothetical protein Csa_1G435200 [Cucumis sativus][more]
gi|659066275|ref|XP_008463560.1|9.1e-09100.00PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 2 [Cucumis melo][more]
gi|970013889|ref|XP_015067925.1|1.0e-0790.00PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Solanum pennellii][more]
gi|460379267|ref|XP_004235385.1|1.0e-0790.00PREDICTED: DNA polymerase epsilon subunit 2 [Solanum lycopersicum][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G435200Csa1G435200gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0069494G0069494EST
H0008590H0008590EST