CU123777 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU123777
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 20125418 .. 20125646 (+)
Sequence length	229

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CACATTGCATTTCACATCTTGTTTTGAGATGCTGGGATCTGAAACCACCTCCTTTACAGCAATCTTCCCCTCCAACATGCTCACCACCGACGACATGGCTGGTCTGTCAGCAGAAACGACATTTGTGCATTGGAGGCCAATATTGATCATCGCCATTGCCTCTCTCTTGTTGAAATCAGAACCTAACCGTGAGTCGACAAGCTCTAATAAACTGTCTTTCTCTTTTAAA

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU123777 vs. Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = -2


Query: 10  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 69
           L+E+ SLLELVD  L SD+++ EAM M+N+ L CTN     RP MS VVS++EGK A++E
Sbjct: 899 LQERGSLLELVDPTLASDYSEEEAMLMLNVALMCTNASPTLRPTMSQVVSLIEGKTAMQE 958

Query: 70  VVSDPSISKQDVK 129
           ++SDPS S  + K
Sbjct: 959 LLSDPSFSTVNPK 971

Query: 130  189
           
Sbjct: 1019  971

Query: 190  229
           
Sbjct: 1079  971

[Close]

BLAST of CU123777 vs. Swiss-Prot
Match: Y3148_ARATH (Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-12
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = -2


Query: 19  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVK- 78
           L+E+++LLE+VD RLG+D+NK+EA+ MI IG+ CT+    DRP+MS+VVSMLEG   V  
Sbjct: 892 LREQNTLLEVVDPRLGTDYNKQEALMMIQIGMLCTSPAPGDRPSMSTVVSMLEGHSTVNV 951

Query: 79  EVVSDPSISKQ 138
           E + + S++ +
Sbjct: 952 EKLLEASVNNE 962

Query: 139  198
           
Sbjct: 1012  962

Query: 199  229
           
Sbjct: 1072  962

[Close]

BLAST of CU123777 vs. Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-12
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = -2


Query: 31  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 90
           L+E+ SLLELVD  LG+ F+K+EAM M+NI L CTN     RP MSSVVSMLEGKI V+ 
Sbjct: 889 LQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLEGKIKVQP 948

Query: 91  VV----SDPS 150
            +    +DPS
Sbjct: 949 PLVKREADPS 958

Query: 151  210
           
Sbjct: 1009  958

Query: 211  229
           
Sbjct: 1069  958

[Close]

BLAST of CU123777 vs. Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-12
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = -2


Query: 19  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVK- 78
           L+EK++LLELVD RLGS++N+ EAM MI I + CT+    +RP+MS VV MLEGK  V+ 
Sbjct: 844 LREKNNLLELVDPRLGSEYNREEAMTMIQIAIMCTSSEPCERPSMSEVVKMLEGKKMVEV 903

Query: 79  EVVSDPSISKQ 138
           E + + S+ ++
Sbjct: 904 EKLEEASVHRE 914

Query: 139  198
           
Sbjct: 964  914

Query: 199  229
           
Sbjct: 1024  914

[Close]

BLAST of CU123777 vs. Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-12
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = -2


Query: 31  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 90
           L+E+ SLLELVD  LG+ F+K+EAM M+NI L CTN     RP MSSVVSML+GKI V+ 
Sbjct: 887 LQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLQGKIKVQP 946

Query: 91  VV----SDPS 150
            +    +DPS
Sbjct: 947 PLVKREADPS 956

Query: 151  210
           
Sbjct: 1007  956

Query: 211  229
           
Sbjct: 1067  956

[Close]

BLAST of CU123777 vs. TrEMBL
Match: A0A0A0L4J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G624420 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-20
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = -2


Query: 13  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 72
           LK +  LL+LVDSRLGSDFNK EAM MINI LQCT++ +ADRP+MS+VV +LEGKIAV+E
Sbjct: 140 LKVRGDLLDLVDSRLGSDFNKTEAMTMINIALQCTDISAADRPSMSTVVGILEGKIAVEE 199

Query: 73  VVSDPSISKQDV 132
           + SDP++SKQDV
Sbjct: 200 LASDPNVSKQDV 211

Query: 133  192
           
Sbjct: 260  211

Query: 193  229
           
Sbjct: 320  211

[Close]

BLAST of CU123777 vs. TrEMBL
Match: A5B4N1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028028 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.0e-19
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = -2


Query: 10  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 69
           LKEK+SL+++VD RLGSDFNK E MAM+NI L CT + SA RPAMSSVVSMLEG+ AV++
Sbjct: 756 LKEKESLMDIVDPRLGSDFNKEEVMAMLNIALLCTTISSAVRPAMSSVVSMLEGRTAVQD 815

Query: 70  VVSDPSISKQDVK 129
           +VSDPS    D+K
Sbjct: 816 IVSDPSAPSDDLK 828

Query: 130  189
           
Sbjct: 876  828

Query: 190  229
           
Sbjct: 936  828

[Close]

BLAST of CU123777 vs. TrEMBL
Match: F6H2L6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00520 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-18
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = -2


Query: 10  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 69
           LKEK SL+++VD RLGSDFNK E MAM+NI L CT + SA RPAMSSVVSMLEG+ AV++
Sbjct: 885 LKEKGSLMDIVDPRLGSDFNKEEVMAMLNIALLCTTISSAVRPAMSSVVSMLEGRTAVQD 944

Query: 70  VVSDPSISKQDVK 129
           +VSDPS    D+K
Sbjct: 945 IVSDPSAPSDDLK 957

Query: 130  189
           
Sbjct: 1005  957

Query: 190  229
           
Sbjct: 1065  957

[Close]

BLAST of CU123777 vs. TrEMBL
Match: F6H2L4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00500 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-18
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = -2


Query: 10  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 69
           LKEK +L++LVD RLGSDFNK E MAM+NI L CTN+ SA RPAMSSVVSMLEG  AV++
Sbjct: 898 LKEKGNLMDLVDPRLGSDFNKEEVMAMLNIALLCTNISSAVRPAMSSVVSMLEGITAVQD 957

Query: 70  VVSDPSISKQDVK 129
           +VSDPS    D+K
Sbjct: 958 IVSDPSAPSDDLK 970

Query: 130  189
           
Sbjct: 1018  970

Query: 190  229
           
Sbjct: 1078  970

[Close]

BLAST of CU123777 vs. TrEMBL
Match: F6H2L2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00470 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-18
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = -2


Query: 10  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 69
           LKEK SL+++VD RLGSDFNK E MAM+NI L CT + SA RPAMSSVVSMLEG+ AV++
Sbjct: 881 LKEKGSLMDIVDPRLGSDFNKEEVMAMLNIALLCTTISSAVRPAMSSVVSMLEGRTAVQD 940

Query: 70  VVSDPSISKQDVK 129
           +VSDPS    D+K
Sbjct: 941 IVSDPSAPSDDLK 953

Query: 130  189
           
Sbjct: 1001  953

Query: 190  229
           
Sbjct: 1061  953

[Close]

BLAST of CU123777 vs. NCBI nr
Match: gi|449456691|ref|XP_004146082.1| (PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.3e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = -2


Query: 13  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 72
           LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE
Sbjct: 883 LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 942

Query: 73  VVSDPSISKQDV 132
           VVSDPSISKQDV
Sbjct: 943 VVSDPSISKQDV 954

Query: 133  192
           
Sbjct: 1003  954

Query: 193  229
           
Sbjct: 1063  954

[Close]

BLAST of CU123777 vs. NCBI nr
Match: gi|659127571|ref|XP_008463771.1| (PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-27
Identity = 67/72 (93.06%), Postives = 71/72 (98.61%), Query Frame = -2


Query: 13  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 72
           LKEKDSLLELVD RLGSDFNKREAMAMINIGLQCTNV++ADRPAMSSVVSMLEGK+AVKE
Sbjct: 882 LKEKDSLLELVDPRLGSDFNKREAMAMINIGLQCTNVIAADRPAMSSVVSMLEGKVAVKE 941

Query: 73  VVSDPSISKQDV 132
           VVSDPS+SKQDV
Sbjct: 942 VVSDPSMSKQDV 953

Query: 133  192
           
Sbjct: 1002  953

Query: 193  229
           
Sbjct: 1062  953

[Close]

BLAST of CU123777 vs. NCBI nr
Match: gi|778697805|ref|XP_011654409.1| (PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-19
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = -2


Query: 13  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 72
           LK +  LL+LVDSRLGSDFNK EAM MINI LQCT++ +ADRP+MS+VV +LEGKIAV+E
Sbjct: 852 LKVRGDLLDLVDSRLGSDFNKTEAMTMINIALQCTDISAADRPSMSTVVGILEGKIAVEE 911

Query: 73  VVSDPSISKQDV 132
           + SDP++SKQDV
Sbjct: 912 LASDPNVSKQDV 923

Query: 133  192
           
Sbjct: 972  923

Query: 193  229
           
Sbjct: 1032  923

[Close]

BLAST of CU123777 vs. NCBI nr
Match: gi|700199878|gb|KGN55036.1| (hypothetical protein Csa_4G624420 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-19
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = -2


Query: 13  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 72
           LK +  LL+LVDSRLGSDFNK EAM MINI LQCT++ +ADRP+MS+VV +LEGKIAV+E
Sbjct: 140 LKVRGDLLDLVDSRLGSDFNKTEAMTMINIALQCTDISAADRPSMSTVVGILEGKIAVEE 199

Query: 73  VVSDPSISKQDV 132
           + SDP++SKQDV
Sbjct: 200 LASDPNVSKQDV 211

Query: 133  192
           
Sbjct: 260  211

Query: 193  229
           
Sbjct: 320  211

[Close]

BLAST of CU123777 vs. NCBI nr
Match: gi|764557711|ref|XP_011460817.1| (PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Fragaria vesca subsp. vesca])

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-18
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = -2


Query: 13  LKEKDSLLELVDSRLGSDFNKREAMAMINIGLQCTNVVSADRPAMSSVVSMLEGKIAVKE 72
           LKEK +LLELVD RLGSDFNK E M  IN+ L CTNV++ADRPAMSSVVSMLEGK +V+E
Sbjct: 908 LKEKGNLLELVDPRLGSDFNKEEMMITINVALLCTNVIAADRPAMSSVVSMLEGKASVQE 967

Query: 73  VVSDPSISKQDV 132
           +VSDP+  K+++
Sbjct: 968 LVSDPNAWKEEM 979

Query: 133  192
           
Sbjct: 1028  979

Query: 193  229
           
Sbjct: 1088  979

The following BLAST results are available for this feature:

BLAST of CU123777 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1765_ARATH	1.2e-14	53.42	Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidop...	[more]
Y3148_ARATH	1.4e-12	50.70	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g1...	[more]
Y5343_ARATH	2.4e-12	58.57	Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidop...	[more]
Y1534_ARATH	2.4e-12	50.70	Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidop...	[more]
Y5344_ARATH	5.3e-12	57.14	Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidop...	[more]

BLAST of CU123777 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4J2_CUCSA	2.8e-20	70.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G624420 PE=4 SV=1	[more]
A5B4N1_VITVI	7.0e-19	67.12	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028028 PE=3 SV=1	[more]
F6H2L6_VITVI	1.6e-18	67.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00520 PE=4 SV=...	[more]
F6H2L4_VITVI	1.6e-18	68.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00500 PE=4 SV=...	[more]
F6H2L2_VITVI	1.6e-18	67.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00470 PE=4 SV=...	[more]

BLAST of CU123777 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456691\|ref\|XP_004146082.1\|	6.3e-29	100.00	PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein k...	[more]
gi\|659127571\|ref\|XP_008463771.1\|	2.0e-27	93.06	PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein k...	[more]
gi\|778697805\|ref\|XP_011654409.1\|	3.5e-19	70.83	PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein k...	[more]
gi\|700199878\|gb\|KGN55036.1\|	3.5e-19	70.83	hypothetical protein Csa_4G624420 [Cucumis sativus]	[more]
gi\|764557711\|ref\|XP_011460817.1\|	5.0e-18	69.44	PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein k...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G624450	Csa4G624450	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KO4NS	FKNP3UI02KO4NS	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27006	FAMILY NOT NAMED	coord: 2..69 score: 2.1
None	No IPR available	PANTHER	PTHR27006:SF11	SUBFAMILY NOT NAMED	coord: 2..69 score: 2.1