CU123799 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU123799
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 6293701 .. 6294362 (+)
Sequence length	193

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATGCTTCCCAATTGCCTCAAGGGCTGGTGCTCCAATGTTTTTACAAAAGCTTAAATCCAAAAAAGTTACAGCAGAAAGCTTGTCAGCAACCTGTTCTACAGTTGAATTGGTTATTTCGCTTCTTGGTACCCGTAAAGTACGAAGGGCTTTGCCATGTTTTGCAATCAGGGACAAACTAGAGTCATTAGGGAGA

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU123799 vs. Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-13
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           L NDS  S IA+H  +L+TL+VPRS +TNS V  VA+KLS++TFLDLS+C  IG  A++A
Sbjct: 92  LRNDSIFSFIAQHAGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQA 151

Query: 64  IGK 123
           IGK
Sbjct: 152 IGK 154

Query: 124  183
           
Sbjct: 212  154

Query: 184  193
           
Sbjct: 272  154

[Close]

BLAST of CU123799 vs. TrEMBL
Match: A0A0A0L0J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G096100 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.2e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           LPNDSSLSLIAKHGKAL TLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA
Sbjct: 90  LPNDSSLSLIAKHGKALHTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 149

Query: 64  IGK 123
           IGK
Sbjct: 150 IGK 152

Query: 124  183
           
Sbjct: 210  152

Query: 184  193
           
Sbjct: 270  152

[Close]

BLAST of CU123799 vs. TrEMBL
Match: A0A061DJC8_THECC (F-box with wd-40 2 isoform 1 OS=Theobroma cacao GN=TCM_001074 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-16
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           LPND S S IA + K+L+TLR+PRSEI+++ VEQVA KLS+VTFLD+S+C+NIGAPALEA
Sbjct: 91  LPNDRSFSFIADNAKSLQTLRLPRSEISDAVVEQVAGKLSSVTFLDVSYCRNIGAPALEA 150

Query: 64  IGK 123
           IGK
Sbjct: 151 IGK 153

Query: 124  183
           
Sbjct: 211  153

Query: 184  193
           
Sbjct: 271  153

[Close]

BLAST of CU123799 vs. TrEMBL
Match: A0A0B0MJ50_GOSAR (F-box FBW2-like protein OS=Gossypium arboreum GN=F383_19029 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-16
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           LPN  S S IA + K+LRTLR+PRSEI++S VEQVA +LS+VTFLD+S+C+NIGAPALEA
Sbjct: 91  LPNSQSFSFIADNAKSLRTLRLPRSEISDSVVEQVAGRLSSVTFLDVSYCRNIGAPALEA 150

Query: 64  IGK 123
           IGK
Sbjct: 151 IGK 153

Query: 124  183
           
Sbjct: 211  153

Query: 184  193
           
Sbjct: 271  153

[Close]

BLAST of CU123799 vs. TrEMBL
Match: A0A0D2MJ12_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040600 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-16
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           LPN  S S IA + K+LRTLR+PRSEI +S VEQVA +LS+VTFLD+S+C+NIGAPALEA
Sbjct: 91  LPNGQSFSFIADNAKSLRTLRLPRSEINDSVVEQVAGRLSSVTFLDVSYCRNIGAPALEA 150

Query: 64  IGK 123
           IGK
Sbjct: 151 IGK 153

Query: 124  183
           
Sbjct: 211  153

Query: 184  193
           
Sbjct: 271  153

[Close]

BLAST of CU123799 vs. TrEMBL
Match: A0A0B0NB98_GOSAR (F-box FBW2-like protein OS=Gossypium arboreum GN=F383_15094 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-15
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           L ND S SLIA + K+L+TLR+PRSEI++S VEQVA +L +VTFLD+S+C+NIGAPALEA
Sbjct: 91  LANDQSFSLIADNAKSLQTLRLPRSEISDSIVEQVAGRLFSVTFLDVSYCRNIGAPALEA 150

Query: 64  IGK 123
           IGK
Sbjct: 151 IGK 153

Query: 124  183
           
Sbjct: 211  153

Query: 184  193
           
Sbjct: 271  153

[Close]

BLAST of CU123799 vs. NCBI nr
Match: gi|449438827|ref|XP_004137189.1| (PREDICTED: F-box protein FBW2-like [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 6.1e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           LPNDSSLSLIAKHGKAL TLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA
Sbjct: 90  LPNDSSLSLIAKHGKALHTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 149

Query: 64  IGK 123
           IGK
Sbjct: 150 IGK 152

Query: 124  183
           
Sbjct: 210  152

Query: 184  193
           
Sbjct: 270  152

[Close]

BLAST of CU123799 vs. NCBI nr
Match: gi|659111194|ref|XP_008455627.1| (PREDICTED: F-box protein FBW2-like [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           LPNDSSLSLIAK+GK L TLRVPRSEITNSTVEQVAD+LSAVTFLDLSFCKNIGAPALEA
Sbjct: 90  LPNDSSLSLIAKYGKVLHTLRVPRSEITNSTVEQVADRLSAVTFLDLSFCKNIGAPALEA 149

Query: 64  IGK 123
           IGK
Sbjct: 150 IGK 152

Query: 124  183
           
Sbjct: 210  152

Query: 184  193
           
Sbjct: 270  152

[Close]

BLAST of CU123799 vs. NCBI nr
Match: gi|590707063|ref|XP_007047899.1| (F-box with wd-40 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-16
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           LPND S S IA + K+L+TLR+PRSEI+++ VEQVA KLS+VTFLD+S+C+NIGAPALEA
Sbjct: 91  LPNDRSFSFIADNAKSLQTLRLPRSEISDAVVEQVAGKLSSVTFLDVSYCRNIGAPALEA 150

Query: 64  IGK 123
           IGK
Sbjct: 151 IGK 153

Query: 124  183
           
Sbjct: 211  153

Query: 184  193
           
Sbjct: 271  153

[Close]

BLAST of CU123799 vs. NCBI nr
Match: gi|728811706|gb|KHG00392.1| (F-box FBW2 -like protein [Gossypium arboreum])

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           LPN  S S IA + K+LRTLR+PRSEI++S VEQVA +LS+VTFLD+S+C+NIGAPALEA
Sbjct: 91  LPNSQSFSFIADNAKSLRTLRLPRSEISDSVVEQVAGRLSSVTFLDVSYCRNIGAPALEA 150

Query: 64  IGK 123
           IGK
Sbjct: 151 IGK 153

Query: 124  183
           
Sbjct: 211  153

Query: 184  193
           
Sbjct: 271  153

[Close]

BLAST of CU123799 vs. NCBI nr
Match: gi|823139890|ref|XP_012469807.1| (PREDICTED: F-box protein FBW2-like [Gossypium raimondii])

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-16
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = -2


Query: 4   LPNDSSLSLIAKHGKALRTLRVPRSEITNSTVEQVADKLSAVTFLDLSFCKNIGAPALEA 63
           LPN  S S IA + K+LRTLR+PRSEI +S VEQVA +LS+VTFLD+S+C+NIGAPALEA
Sbjct: 91  LPNGQSFSFIADNAKSLRTLRLPRSEINDSVVEQVAGRLSSVTFLDVSYCRNIGAPALEA 150

Query: 64  IGK 123
           IGK
Sbjct: 151 IGK 153

Query: 124  183
           
Sbjct: 211  153

Query: 184  193
           
Sbjct: 271  153

The following BLAST results are available for this feature:

BLAST of CU123799 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FBW2_ARATH	1.4e-13	60.32	F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1	[more]

BLAST of CU123799 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0J6_CUCSA	4.2e-25	98.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G096100 PE=4 SV=1	[more]
A0A061DJC8_THECC	1.2e-16	71.43	F-box with wd-40 2 isoform 1 OS=Theobroma cacao GN=TCM_001074 PE=4 SV=1	[more]
A0A0B0MJ50_GOSAR	1.6e-16	71.43	F-box FBW2-like protein OS=Gossypium arboreum GN=F383_19029 PE=4 SV=1	[more]
A0A0D2MJ12_GOSRA	2.7e-16	71.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G040600 PE=4 SV=1	[more]
A0A0B0NB98_GOSAR	1.8e-15	69.84	F-box FBW2-like protein OS=Gossypium arboreum GN=F383_15094 PE=4 SV=1	[more]

BLAST of CU123799 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438827\|ref\|XP_004137189.1\|	6.1e-25	98.41	PREDICTED: F-box protein FBW2-like [Cucumis sativus]	[more]
gi\|659111194\|ref\|XP_008455627.1\|	1.9e-23	93.65	PREDICTED: F-box protein FBW2-like [Cucumis melo]	[more]
gi\|590707063\|ref\|XP_007047899.1\|	1.8e-16	71.43	F-box with wd-40 2 isoform 1 [Theobroma cacao]	[more]
gi\|728811706\|gb\|KHG00392.1\|	2.3e-16	71.43	F-box FBW2 -like protein [Gossypium arboreum]	[more]
gi\|823139890\|ref\|XP_012469807.1\|	3.9e-16	71.43	PREDICTED: F-box protein FBW2-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G096100	Csa4G096100	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KOFD1	FKNP3UI02KOFD1	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF52047	RNI-like	coord: 6..57 score: 5.1