CU123542 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU123542
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 26046698 .. 26046926 (-)
Sequence length229
The following sequences are available for this feature:

transcribed_cluster sequence

GCTTGATCAAGAGTGGGGAAGATGGGTTGAGGTAAAAATTTGGGGAATGAATCCTTTGTTTTGGGAAATGATTGTTGTTTTTTCAGTTTCAACTCCATATTTTAAAGGACTTAAAGGGAGTTGCATATACTTTACTCATACACCAAAATGTGCTCTTGGTTATAACACTCTTGTATTTGAGCTTGAAGAGAAAAAGGATTCTGAACGCCTTTTCAAATGATAATGCACC
Library categoryESTs
fruit (8DPP) library1
BLAST of CU123542 vs. TrEMBL
Match: A0A0A0KJJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507420 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.5e-21
Identity = 51/65 (78.46%), Postives = 52/65 (80.00%), Query Frame = 2

Query: 2   LDQEWGRWVEVKIWGMNPLFWEMIVVFSVSTPYFKGLKGSCIYFTHTPKCALGYNTLVFE 61
           LDQEWGRWVEVK  G           FSVSTPYFKGLKGSCIYFTHTPKCALGYNTLVFE
Sbjct: 316 LDQEWGRWVEVKNLGNESFVLGNDCCFSVSTPYFKGLKGSCIYFTHTPKCALGYNTLVFE 375

Query: 62  LEEKK 121
           LEEK+
Sbjct: 376 LEEKR 380

Query: 122 181
           
Sbjct: 436 380

Query: 182 197
           
Sbjct: 496 380

BLAST of CU123542 vs. NCBI nr
Match: gi|778719846|ref|XP_004134837.2| (PREDICTED: putative F-box protein At1g65770 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-21
Identity = 51/65 (78.46%), Postives = 52/65 (80.00%), Query Frame = 2

Query: 2   LDQEWGRWVEVKIWGMNPLFWEMIVVFSVSTPYFKGLKGSCIYFTHTPKCALGYNTLVFE 61
           LDQEWGRWVEVK  G           FSVSTPYFKGLKGSCIYFTHTPKCALGYNTLVFE
Sbjct: 316 LDQEWGRWVEVKNLGNESFVLGNDCCFSVSTPYFKGLKGSCIYFTHTPKCALGYNTLVFE 375

Query: 62  LEEKK 121
           LEEK+
Sbjct: 376 LEEKR 380

Query: 122 181
           
Sbjct: 436 380

Query: 182 197
           
Sbjct: 496 380

BLAST of CU123542 vs. NCBI nr
Match: gi|659081066|ref|XP_008441132.1| (PREDICTED: F-box protein At2g17036 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-18
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 2

Query: 2   LDQEWGRWVEVKIWGMNPLFWEMIVVFSVSTPYFKGLKGSCIYFTHTPKCALGYNTLVFE 61
           LDQEWGRWVEVK  G           FSVSTP F+GLKGSCIYFTHTPKCALGYNT VFE
Sbjct: 313 LDQEWGRWVEVKNLGNQSFILGNDCCFSVSTPNFEGLKGSCIYFTHTPKCALGYNTHVFE 372

Query: 62  LEEKK 121
           LE+K+
Sbjct: 373 LEDKR 377

Query: 122 181
           
Sbjct: 433 377

Query: 182 197
           
Sbjct: 493 377

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KJJ1_CUCSA7.5e-2178.46Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507420 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778719846|ref|XP_004134837.2|3.7e-2178.46PREDICTED: putative F-box protein At1g65770 [Cucumis sativus][more]
gi|659081066|ref|XP_008441132.1|1.3e-1872.31PREDICTED: F-box protein At2g17036 [Cucumis melo][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR005174DUF295

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G507420Csa6G507420gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KKBVZFKNP3UI02KKBVZEST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005174Domain unknown function DUF295PFAMPF03478DUF295coord: 28..48
score: 2.