CU128331 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU128331
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionFarnesyl diphosphate synthase
LocationChr6 : 2026276 .. 2026518 (-)
Sequence length242
The following sequences are available for this feature:

transcribed_cluster sequence

ATGATTGCAGGTTGCTTGTGCACTGGTTATGGCAGGTGAAGATCTTGAGAATCATATTGCAGTTAAGGACATTCTTGTTCAGATGGGTGTTTATTTTCAAGTTCAGGTATATTACCTTCACTTGAATGGTTGATTAATGATTCTGATTTTCTCTAGATTTCTTAGGGTTGAGGTCGCATTCACATTATCTGAACTACACTTAGTTTTTTTAAGAAATGTTTGTTTAAGCCGATGTTTGATTC
Library categoryESTs
fruit (8DPP) library1
BLAST of CU128331 vs. Swiss-Prot
Match: FPPS1_ARATH (Farnesyl pyrophosphate synthase 1, mitochondrial OS=Arabidopsis thaliana GN=FPS1 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-08
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYL 64
           L VACAL+MAGE+LENHI VK++LV MG+YFQVQ  YL
Sbjct: 240 LPVACALLMAGENLENHIDVKNVLVDMGIYFQVQDDYL 277

Query: 65  119
           
Sbjct: 300 277

BLAST of CU128331 vs. Swiss-Prot
Match: FPPS_HELAN (Farnesyl pyrophosphate synthase OS=Helianthus annuus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-08
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACAL+M GEDL+NH+ VK++LV+MG YFQVQ  YL   G
Sbjct: 198 LPVACALLMFGEDLDNHVEVKNVLVEMGTYFQVQDDYLDCFG 239

Query: 65  124
           
Sbjct: 258 239

Query: 125 131
           
Sbjct: 318 239

BLAST of CU128331 vs. Swiss-Prot
Match: FPPS2_ARATH (Farnesyl pyrophosphate synthase 2 OS=Arabidopsis thaliana GN=FPS2 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYL 64
           L VACAL+MAGE+LENH  VK +LV MG+YFQVQ  YL
Sbjct: 198 LPVACALLMAGENLENHTDVKTVLVDMGIYFQVQDDYL 235

Query: 65  119
           
Sbjct: 258 235

BLAST of CU128331 vs. Swiss-Prot
Match: FPPS2_PARAR (Farnesyl pyrophosphate synthase 2 OS=Parthenium argentatum GN=FPS2 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACAL+M GEDLE H+ VK++LV+MG YFQVQ  YL   G
Sbjct: 198 LPVACALLMFGEDLEKHVEVKNVLVEMGTYFQVQDDYLDCFG 239

Query: 65  124
           
Sbjct: 258 239

Query: 125 131
           
Sbjct: 318 239

BLAST of CU128331 vs. Swiss-Prot
Match: FPPS1_LUPAL (Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACAL+M GE+L+NHI VK+ILV MG YFQVQ  YL   G
Sbjct: 198 LPVACALLMVGENLDNHIDVKNILVDMGTYFQVQDDYLDCFG 239

Query: 65  124
           
Sbjct: 258 239

Query: 125 131
           
Sbjct: 318 239

BLAST of CU128331 vs. TrEMBL
Match: A0A0A0K801_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017060 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-09
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQV 64
           L VACALVMAGEDLENHIAVKDILVQMGVYFQVQV
Sbjct: 198 LPVACALVMAGEDLENHIAVKDILVQMGVYFQVQV 232

Query: 65  110
           
Sbjct: 258 232

BLAST of CU128331 vs. TrEMBL
Match: A0A140GWW1_MANES (Farnesyl pyrophosphate synthase 1 OS=Manihot esculenta GN=FPS1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-08
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACAL+MAGE+L+NHIAVKDILVQMG+YFQVQ  YL   G
Sbjct: 198 LPVACALLMAGENLDNHIAVKDILVQMGIYFQVQDDYLDCFG 239

Query: 65  124
           
Sbjct: 258 239

Query: 125 131
           
Sbjct: 318 239

BLAST of CU128331 vs. TrEMBL
Match: M5VZY8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008174mg PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-08
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG*LMILIFSRFLRVEVAFT 64
           L VACAL+MAGEDLE+H+ VK+IL++MG YFQVQ  YL   G   ++ + R+ R++V   
Sbjct: 198 LPVACALLMAGEDLESHVDVKNILIEMGTYFQVQDDYLDCFGDPEVIGWDRYSRLQVLLV 257

Query: 65  LSELHLVFLR 124
             E    F R
Sbjct: 258 GCESFRTFQR 267

Query: 125 184
           
Sbjct: 318 267

Query: 185 215
           
Sbjct: 378 267

BLAST of CU128331 vs. TrEMBL
Match: A0A0G3BFY6_PAELC (Farnesyl pyrophosphate synthase OS=Paeonia lactiflora GN=FPPS PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACALVM+GE+L+NH+AVKDILV+MG YFQVQ  YL   G
Sbjct: 205 LPVACALVMSGENLDNHVAVKDILVEMGTYFQVQDDYLDCYG 246

Query: 65  124
           
Sbjct: 265 246

Query: 125 131
           
Sbjct: 325 246

BLAST of CU128331 vs. TrEMBL
Match: Q8L7F4_HEVBR (Farnesyl diphosphate synthase OS=Hevea brasiliensis GN=FDP PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACAL++AGE+L+NHI VKDILVQMG+YFQVQ  YL   G
Sbjct: 198 LPVACALLIAGENLDNHIVVKDILVQMGIYFQVQDDYLDCFG 239

Query: 65  124
           
Sbjct: 258 239

Query: 125 131
           
Sbjct: 318 239

BLAST of CU128331 vs. NCBI nr
Match: gi|449441191|ref|XP_004138366.1| (PREDICTED: farnesyl pyrophosphate synthase 1 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 36/42 (85.71%), Postives = 36/42 (85.71%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACALVMAGEDLENHIAVKDILVQMGVYFQVQ  YL   G
Sbjct: 198 LPVACALVMAGEDLENHIAVKDILVQMGVYFQVQDDYLDCFG 239

Query: 65  124
           
Sbjct: 258 239

Query: 125 131
           
Sbjct: 318 239

BLAST of CU128331 vs. NCBI nr
Match: gi|700190686|gb|KGN45890.1| (hypothetical protein Csa_6G017060 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-09
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQV 64
           L VACALVMAGEDLENHIAVKDILVQMGVYFQVQV
Sbjct: 198 LPVACALVMAGEDLENHIAVKDILVQMGVYFQVQV 232

Query: 65  110
           
Sbjct: 258 232

BLAST of CU128331 vs. NCBI nr
Match: gi|659126192|ref|XP_008463060.1| (PREDICTED: farnesyl pyrophosphate synthase 1 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-08
Identity = 34/42 (80.95%), Postives = 34/42 (80.95%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACALVMAGEDLE H AVKDILVQMGVYFQVQ  YL   G
Sbjct: 198 LPVACALVMAGEDLEKHTAVKDILVQMGVYFQVQDDYLDCFG 239

Query: 65  124
           
Sbjct: 258 239

Query: 125 131
           
Sbjct: 318 239

BLAST of CU128331 vs. NCBI nr
Match: gi|1002794045|gb|AMN82833.1| (farnesyl pyrophosphate synthase 1 [Manihot esculenta])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACAL+MAGE+L+NHIAVKDILVQMG+YFQVQ  YL   G
Sbjct: 198 LPVACALLMAGENLDNHIAVKDILVQMGIYFQVQDDYLDCFG 239

Query: 65  124
           
Sbjct: 258 239

Query: 125 131
           
Sbjct: 318 239

BLAST of CU128331 vs. NCBI nr
Match: gi|826137337|gb|AKJ26301.1| (farnesyl pyrophosphate synthase [Paeonia lactiflora])

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 2

Query: 5   LQVACALVMAGEDLENHIAVKDILVQMGVYFQVQVYYLHLNG 64
           L VACALVM+GE+L+NH+AVKDILV+MG YFQVQ  YL   G
Sbjct: 205 LPVACALVMSGENLDNHVAVKDILVEMGTYFQVQDDYLDCYG 246

Query: 65  124
           
Sbjct: 265 246

Query: 125 131
           
Sbjct: 325 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FPPS1_ARATH2.2e-0873.68Farnesyl pyrophosphate synthase 1, mitochondrial OS=Arabidopsis thaliana GN=FPS1... [more]
FPPS_HELAN6.4e-0864.29Farnesyl pyrophosphate synthase OS=Helianthus annuus GN=FPS1 PE=2 SV=1[more]
FPPS2_ARATH1.4e-0771.05Farnesyl pyrophosphate synthase 2 OS=Arabidopsis thaliana GN=FPS2 PE=2 SV=1[more]
FPPS2_PARAR1.4e-0764.29Farnesyl pyrophosphate synthase 2 OS=Parthenium argentatum GN=FPS2 PE=2 SV=1[more]
FPPS1_LUPAL1.9e-0766.67Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K801_CUCSA3.1e-0997.14Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017060 PE=3 SV=1[more]
A0A140GWW1_MANES4.5e-0876.19Farnesyl pyrophosphate synthase 1 OS=Manihot esculenta GN=FPS1 PE=2 SV=1[more]
M5VZY8_PRUPE7.7e-0848.57Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008174mg PE=3 SV=1[more]
A0A0G3BFY6_PAELC2.2e-0771.43Farnesyl pyrophosphate synthase OS=Paeonia lactiflora GN=FPPS PE=2 SV=1[more]
Q8L7F4_HEVBR3.8e-0771.43Farnesyl diphosphate synthase OS=Hevea brasiliensis GN=FDP PE=2 SV=1[more]
Match NameE-valueIdentityDescription
gi|449441191|ref|XP_004138366.1|4.5e-0985.71PREDICTED: farnesyl pyrophosphate synthase 1 [Cucumis sativus][more]
gi|700190686|gb|KGN45890.1|5.8e-0997.14hypothetical protein Csa_6G017060 [Cucumis sativus][more]
gi|659126192|ref|XP_008463060.1|8.4e-0880.95PREDICTED: farnesyl pyrophosphate synthase 1 [Cucumis melo][more]
gi|1002794045|gb|AMN82833.1|1.1e-0776.19farnesyl pyrophosphate synthase 1 [Manihot esculenta][more]
gi|826137337|gb|AKJ26301.1|5.5e-0771.43farnesyl pyrophosphate synthase [Paeonia lactiflora][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G017060Csa6G017060gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MIEHAFKNP3UI02MIEHAEST