CU140420 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU140420
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 12497205 .. 12497282 (+)
Sequence length83
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ATTGTTCTTACTCGGAGCTGCCGCCACCGCCTCCGCCACCGTTTTATAATTTCCACTTCCATCCGCCGCCACCACAGCCCCGC
Library
Library categoryESTs
gynoecious flower library1
Homology
The following BLAST results are available for this feature:
BLAST of CU140420 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
cellular_component GO:0005618 cell wall
molecular_function GO:0030599 pectinesterase activity
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa7G343870Csa7G343870gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0073061G0073061EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 3..27
score: 9.
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 3..27
score: 1.0
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 3..27
score: 1.