CU143201 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU143201
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 19412659 .. 19412771 (+)
Sequence length114
The following sequences are available for this feature:

transcribed_cluster sequence

TTAATCTGCTCATCCGTCAGCTACTATCACCCGCCCTGCTCTTCAAATTCTTGTAATATGTTGGCGGCGGCGACGGCATGAACTCAAATCCACCGACGCTACTTCGTTTCCTCA
Library categoryESTs
gynoecious flower library1
BLAST of CU143201 vs. Swiss-Prot
Match: HPPD_PLESU (4-hydroxyphenylpyruvate dioxygenase OS=Plectranthus scutellarioides PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-09
Identity = 27/29 (93.10%), Postives = 26/29 (89.66%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRS VGGFEFMPSPPPTYY+NLKSRAGD
Sbjct: 311 RKRSEVGGFEFMPSPPPTYYRNLKSRAGD 339

Query: 86  113
           
Sbjct: 371 339

BLAST of CU143201 vs. Swiss-Prot
Match: HPPD_DAUCA (4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-08
Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRS +GGFEFMPSPPPTYYKNLK+R GD
Sbjct: 317 RKRSCLGGFEFMPSPPPTYYKNLKNRVGD 345

Query: 86  113
           
Sbjct: 377 345

BLAST of CU143201 vs. Swiss-Prot
Match: HPPD_ARATH (4-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis thaliana GN=HPD PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-08
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRSS+GGF+FMPSPPPTYY+NLK R GD
Sbjct: 324 RKRSSIGGFDFMPSPPPTYYQNLKKRVGD 352

Query: 86  113
           
Sbjct: 384 352

BLAST of CU143201 vs. TrEMBL
Match: A0A0A0KZ39_CUCSA (4-hydroxyphenylpyruvate dioxygenase OS=Cucumis sativus GN=Csa_4G608160 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRSSVGGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 334 RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 362

Query: 86  113
           
Sbjct: 394 362

BLAST of CU143201 vs. TrEMBL
Match: B9GT13_POPTR (4-hydroxyphenylpyruvate dioxygenase OS=Populus trichocarpa GN=POPTR_0002s05840g PE=3 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 4.6e-08
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRS+VGGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 319 RKRSAVGGFEFMPSPPPTYYKNLKSRAGD 347

Query: 86  113
           
Sbjct: 379 347

BLAST of CU143201 vs. TrEMBL
Match: M1BHZ7_SOLTU (4-hydroxyphenylpyruvate dioxygenase OS=Solanum tuberosum GN=PGSC0003DMG400017707 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.0e-08
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRS VGGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 317 RKRSGVGGFEFMPSPPPTYYKNLKSRAGD 345

Query: 86  113
           
Sbjct: 377 345

BLAST of CU143201 vs. TrEMBL
Match: A0A0V0I688_SOLCH (4-hydroxyphenylpyruvate dioxygenase OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.0e-08
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRS VGGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 315 RKRSGVGGFEFMPSPPPTYYKNLKSRAGD 343

Query: 86  113
           
Sbjct: 375 343

BLAST of CU143201 vs. TrEMBL
Match: M1BGV3_SOLTU (4-hydroxyphenylpyruvate dioxygenase OS=Solanum tuberosum GN=PGSC0003DMG400017420 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.9e-08
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRS +GGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 322 RKRSGIGGFEFMPSPPPTYYKNLKSRAGD 350

Query: 86  113
           
Sbjct: 382 350

BLAST of CU143201 vs. NCBI nr
Match: gi|449453770|ref|XP_004144629.1| (PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRSSVGGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 334 RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 362

Query: 86  113
           
Sbjct: 394 362

BLAST of CU143201 vs. NCBI nr
Match: gi|659133566|ref|XP_008466793.1| (PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRSSVGGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 342 RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 370

Query: 86  113
           
Sbjct: 402 370

BLAST of CU143201 vs. NCBI nr
Match: gi|743840528|ref|XP_011026229.1| (PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Populus euphratica])

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-08
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRS+VGGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 319 RKRSAVGGFEFMPSPPPTYYKNLKSRAGD 347

Query: 86  113
           
Sbjct: 379 347

BLAST of CU143201 vs. NCBI nr
Match: gi|566156450|ref|XP_002300867.2| (4-HYDROXYPHENYLPYRUVATE DIOXYGENASE family protein [Populus trichocarpa])

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-08
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRS+VGGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 319 RKRSAVGGFEFMPSPPPTYYKNLKSRAGD 347

Query: 86  113
           
Sbjct: 379 347

BLAST of CU143201 vs. NCBI nr
Match: gi|565375830|ref|XP_006354418.1| (PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Solanum tuberosum])

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-08
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -3

Query: 26  RKRSSVGGFEFMPSPPPTYYKNLKSRAGD 85
           RKRS VGGFEFMPSPPPTYYKNLKSRAGD
Sbjct: 317 RKRSGVGGFEFMPSPPPTYYKNLKSRAGD 345

Query: 86  113
           
Sbjct: 377 345

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
HPPD_PLESU1.2e-0993.104-hydroxyphenylpyruvate dioxygenase OS=Plectranthus scutellarioides PE=2 SV=1[more]
HPPD_DAUCA1.0e-0886.214-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1[more]
HPPD_ARATH1.3e-0882.764-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis thaliana GN=HPD PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0KZ39_CUCSA2.1e-08100.004-hydroxyphenylpyruvate dioxygenase OS=Cucumis sativus GN=Csa_4G608160 PE=3 SV=1[more]
B9GT13_POPTR4.6e-0896.554-hydroxyphenylpyruvate dioxygenase OS=Populus trichocarpa GN=POPTR_0002s05840g ... [more]
M1BHZ7_SOLTU6.0e-0896.554-hydroxyphenylpyruvate dioxygenase OS=Solanum tuberosum GN=PGSC0003DMG400017707... [more]
A0A0V0I688_SOLCH6.0e-0896.554-hydroxyphenylpyruvate dioxygenase OS=Solanum chacoense PE=3 SV=1[more]
M1BGV3_SOLTU7.9e-0893.104-hydroxyphenylpyruvate dioxygenase OS=Solanum tuberosum GN=PGSC0003DMG400017420... [more]
Match NameE-valueIdentityDescription
gi|449453770|ref|XP_004144629.1|1.3e-08100.00PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Cucumis sativus][more]
gi|659133566|ref|XP_008466793.1|1.3e-08100.00PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Cucumis melo][more]
gi|743840528|ref|XP_011026229.1|3.0e-0896.55PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Populus euphratica][more]
gi|566156450|ref|XP_002300867.2|3.0e-0896.554-HYDROXYPHENYLPYRUVATE DIOXYGENASE family protein [Populus trichocarpa][more]
gi|565375830|ref|XP_006354418.1|3.9e-0896.55PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Solanum tuberosum][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G608160Csa4G608160gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0104685G0104685EST