CU165127 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU165127
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	F-box/WD-40 repeat-containing protein
Location	Chr4 : 10664972 .. 10665213 (-)
Sequence length	247

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAGCCGAATCAGAGGGAATTGAATTCTTGTACAAATTCGGTAGATTATTACCTCCCTCACTTCCAAACATTTGCTCTCTAAAAAATGCGCCCGTCGGTGGTCGGTCAATTACCGACCTTCCTCCTGCAATTATATCTGAGATTTTGAACTGCCTTGATCCGAAGGAGCTTGGCATTGTGTCTTGTGTGTCTACTGTTCTTCATAGCATAGCATCTGAACACCATGTATGGAAGGAATTCTACAGCGA

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU165127 vs. Swiss-Prot
Match: FBW3_ARATH (F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-16
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 3


Query: 33  KFGRLLPPSLPNICSLKNAPVGGRSITDLPPAIISEILNCLDPKELGIVSCVSTVLHSIA 92
           K G L+P     + S K+      +I DLP A+ISEILNCLDPKELG+VSCVST LH +A
Sbjct: 46  KKGTLVPSGSKQLLSDKDLST---TIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLA 105

Query: 93  SEHHVWKEFY 152
           SEHH WKEFY
Sbjct: 106 SEHHAWKEFY 112

Query: 153  212
           
Sbjct: 166  112

Query: 213  243
           
Sbjct: 226  112

[Close]

BLAST of CU165127 vs. TrEMBL
Match: A0A0A0L0C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269200 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.9e-24
Identity = 62/81 (76.54%), Postives = 64/81 (79.01%), Query Frame = 3


Query: 3   AESEGIEFLYKFGRLLPPSLPNICSLKNAPVGGRSITDLPPAIISEILNCLDPKELGIVS 62
           AESEGIE       ++          KNAPVGGRSITDLPPAIISEILNCLDPKELGIVS
Sbjct: 37  AESEGIES--DKSEIITSLTSKHLLSKNAPVGGRSITDLPPAIISEILNCLDPKELGIVS 96

Query: 63  CVSTVLHSIASEHHVWKEFYS 122
           CVSTVLHSIASEHHVWKEFYS
Sbjct: 97  CVSTVLHSIASEHHVWKEFYS 115

Query: 123  182
           
Sbjct: 157  115

Query: 183  242
           
Sbjct: 217  115

Query: 243  246
           
Sbjct: 277  115

[Close]

BLAST of CU165127 vs. TrEMBL
Match: A0A061GUI8_THECC (F-box protein 2 OS=Theobroma cacao GN=TCM_041130 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 3


Query: 102 RSITDLPPAIISEILNCLDPKELGIVSCVSTVLHSIASEHHVWKEFY 161
           RSITDLPPA+ISEILNCLDPKELGIVSCVST LH+IASEH VWKEFY
Sbjct: 68  RSITDLPPALISEILNCLDPKELGIVSCVSTTLHNIASEHQVWKEFY 114

Query: 162  221
           
Sbjct: 128  114

Query: 222  243
           
Sbjct: 188  114

[Close]

BLAST of CU165127 vs. TrEMBL
Match: A0A0D2RWE1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G079600 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-16
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 3


Query: 102 RSITDLPPAIISEILNCLDPKELGIVSCVSTVLHSIASEHHVWKEFY 161
           RSITDLPPA++SEILN LDPKELGI+SCVST+LH+IASEHHVWKEFY
Sbjct: 68  RSITDLPPALVSEILNYLDPKELGIISCVSTILHNIASEHHVWKEFY 114

Query: 162  221
           
Sbjct: 128  114

Query: 222  243
           
Sbjct: 188  114

[Close]

BLAST of CU165127 vs. TrEMBL
Match: V4LI88_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016076mg PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.9e-16
Identity = 47/74 (63.51%), Postives = 53/74 (71.62%), Query Frame = 3


Query: 24  FLYKFGRLLPPSLPNICSLKNAPVGGR-SITDLPPAIISEILNCLDPKELGIVSCVSTVL 83
           F  K G L+P     + S K+     R SI DLP A+ISEILNCLDPKELG+VSCVST L
Sbjct: 52  FQQKKGTLVPSDSKQLLSDKDLSTTHRCSIIDLPQALISEILNCLDPKELGLVSCVSTSL 111

Query: 84  HSIASEHHVWKEFY 143
           HS+ASEHH WKEFY
Sbjct: 112 HSLASEHHAWKEFY 125

Query: 144  203
           
Sbjct: 172  125

Query: 204  243
           
Sbjct: 232  125

[Close]

BLAST of CU165127 vs. TrEMBL
Match: G7K2X0_MEDTR (F-box/WD-40 repeat plant protein OS=Medicago truncatula GN=MTR_5g087680 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 3


Query: 39  GRLLPPSLPNICSLKNAPVGGRSITDLPPAIISEILNCLDPKELGIVSCVSTVLHSIASE 98
           G L   S+P    + N     RSITDLPP +ISEILNCLDPKELGIVSCVS +L S+ASE
Sbjct: 76  GALNQSSVPGDVVIGNC----RSITDLPPVLISEILNCLDPKELGIVSCVSLILRSLASE 135

Query: 99  HHVWKEFY 158
           HH WKEFY
Sbjct: 136 HHAWKEFY 139

Query: 159  218
           
Sbjct: 196  139

Query: 219  243
           
Sbjct: 256  139

[Close]

BLAST of CU165127 vs. NCBI nr
Match: gi|778692827|ref|XP_011653530.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-24
Identity = 62/81 (76.54%), Postives = 64/81 (79.01%), Query Frame = 3


Query: 3   AESEGIEFLYKFGRLLPPSLPNICSLKNAPVGGRSITDLPPAIISEILNCLDPKELGIVS 62
           AESEGIE       ++          KNAPVGGRSITDLPPAIISEILNCLDPKELGIVS
Sbjct: 37  AESEGIES--DKSEIITSLTSKHLLSKNAPVGGRSITDLPPAIISEILNCLDPKELGIVS 96

Query: 63  CVSTVLHSIASEHHVWKEFYS 122
           CVSTVLHSIASEHHVWKEFYS
Sbjct: 97  CVSTVLHSIASEHHVWKEFYS 115

Query: 123  182
           
Sbjct: 157  115

Query: 183  242
           
Sbjct: 217  115

Query: 243  246
           
Sbjct: 277  115

[Close]

BLAST of CU165127 vs. NCBI nr
Match: gi|659097885|ref|XP_008449867.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 5.5e-23
Identity = 64/88 (72.73%), Postives = 64/88 (72.73%), Query Frame = 3


Query: 3   AESEGIEFLYKFGRLLPPSLPNICSLK-------NAPVGGRSITDLPPAIISEILNCLDP 62
           AESEGIE              NI SL        NAPVG RSITDLPPAIISEILNCLDP
Sbjct: 37  AESEGIE---------SDESENIASLTSKRLLSINAPVGCRSITDLPPAIISEILNCLDP 96

Query: 63  KELGIVSCVSTVLHSIASEHHVWKEFYS 122
           KELGIVSCVSTVLHSIASEHHVWKEFYS
Sbjct: 97  KELGIVSCVSTVLHSIASEHHVWKEFYS 115

Query: 123  182
           
Sbjct: 157  115

Query: 183  242
           
Sbjct: 217  115

Query: 243  246
           
Sbjct: 277  115

[Close]

BLAST of CU165127 vs. NCBI nr
Match: gi|1012202223|ref|XP_015973516.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Arachis duranensis])

HSP 1 Score: 94.7 bits (234), Expect = 7.7e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 3


Query: 102 RSITDLPPAIISEILNCLDPKELGIVSCVSTVLHSIASEHHVWKEFYS 161
           RSITDLPPAIISEILNCLDPK+LGIVSCVST+LH +ASEHH WKEFY+
Sbjct: 95  RSITDLPPAIISEILNCLDPKDLGIVSCVSTILHRLASEHHAWKEFYA 142

Query: 162  221
           
Sbjct: 155  142

Query: 222  246
           
Sbjct: 215  142

[Close]

BLAST of CU165127 vs. NCBI nr
Match: gi|1021534275|ref|XP_016164113.1| (PREDICTED: uncharacterized protein LOC107606580 [Arachis ipaensis])

HSP 1 Score: 94.7 bits (234), Expect = 7.7e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 3


Query: 102 RSITDLPPAIISEILNCLDPKELGIVSCVSTVLHSIASEHHVWKEFYS 161
           RSITDLPPAIISEILNCLDPK+LGIVSCVST+LH +ASEHH WKEFY+
Sbjct: 95  RSITDLPPAIISEILNCLDPKDLGIVSCVSTILHRLASEHHAWKEFYA 142

Query: 162  221
           
Sbjct: 155  142

Query: 222  246
           
Sbjct: 215  142

[Close]

BLAST of CU165127 vs. NCBI nr
Match: gi|590585792|ref|XP_007015527.1| (F-box protein 2 [Theobroma cacao])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 3


Query: 102 RSITDLPPAIISEILNCLDPKELGIVSCVSTVLHSIASEHHVWKEFY 161
           RSITDLPPA+ISEILNCLDPKELGIVSCVST LH+IASEH VWKEFY
Sbjct: 68  RSITDLPPALISEILNCLDPKELGIVSCVSTTLHNIASEHQVWKEFY 114

Query: 162  221
           
Sbjct: 128  114

Query: 222  243
           
Sbjct: 188  114

The following BLAST results are available for this feature:

BLAST of CU165127 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FBW3_ARATH	1.7e-16	61.43	F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g2...	[more]

BLAST of CU165127 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0C6_CUCSA	5.9e-24	76.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269200 PE=4 SV=1	[more]
A0A061GUI8_THECC	1.2e-16	91.49	F-box protein 2 OS=Theobroma cacao GN=TCM_041130 PE=4 SV=1	[more]
A0A0D2RWE1_GOSRA	2.0e-16	87.23	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G079600 PE=4 SV=1	[more]
V4LI88_EUTSA	5.9e-16	63.51	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016076mg PE=4 SV=1	[more]
G7K2X0_MEDTR	1.3e-15	66.18	F-box/WD-40 repeat plant protein OS=Medicago truncatula GN=MTR_5g087680 PE=4 SV=...	[more]

BLAST of CU165127 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692827\|ref\|XP_011653530.1\|	2.2e-24	76.54	PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis sativus]	[more]
gi\|659097885\|ref\|XP_008449867.1\|	5.5e-23	72.73	PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis melo]	[more]
gi\|1012202223\|ref\|XP_015973516.1\|	7.7e-17	87.50	PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Arachis duranensis]	[more]
gi\|1021534275\|ref\|XP_016164113.1\|	7.7e-17	87.50	PREDICTED: uncharacterized protein LOC107606580 [Arachis ipaensis]	[more]
gi\|590585792\|ref\|XP_007015527.1\|	1.7e-16	91.49	F-box protein 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G269200	Csa4G269200	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0088556	H0088556	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 36..81 score: 3.
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 40..80 score: 8.
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 34..80 score: 11
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 23..81 score: 7.33
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 37..81 score: 2.4
None	No IPR available	PANTHER	PTHR22844	F-BOX AND WD40 DOMAIN PROTEIN	coord: 35..81 score: 2.2
None	No IPR available	PANTHER	PTHR22844:SF160	WD40 REPEAT-CONTAINING PROTEIN	coord: 35..81 score: 2.2