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The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCCGTCGGAACTCGGAAGGAGAAGATGACCGTCGGATGGCCGTCGGAAGCTGACCGAGAACACCAAGTGAGAAGAGGAAGAGACGGACGGCGAGGAGAGGGAGGAGACGAACGGCACAAAAGTGATTTGAGATATGAGAAGAGGAGATGA mRNA sequence ATGGCCGTCGGAACTCGGAAGGAGAAGATGACCGTCGGATGGCCGTCGGAAGCTGACCGAGAACACCAAGTGAGAAGAGGAAGAGACGGACGGCGAGGAGAGGGAGGAGACGAACGGCACAAAAGTGATTTGAGATATGAGAAGAGGAGATGA Coding sequence (CDS) ATGGCCGTCGGAACTCGGAAGGAGAAGATGACCGTCGGATGGCCGTCGGAAGCTGACCGAGAACACCAAGTGAGAAGAGGAAGAGACGGACGGCGAGGAGAGGGAGGAGACGAACGGCACAAAAGTGATTTGAGATATGAGAAGAGGAGATGA Protein sequence MAVGTRKEKMTVGWPSEADREHQVRRGRDGRRGEGGDERHKSDLRYEKRR*
The following terms have been associated with this gene:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0042254 |
ribosome biogenesis |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005840 |
ribosome |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0016740 |
transferase activity |
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
| Feature Name | Unique Name | Type |
|---|
| MU62351 | MU62351 | transcribed_cluster |
| MU50278 | MU50278 | transcribed_cluster |
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001141 | Ribosomal protein L27e | PRODOM | PD009396 | | coord: 60..135
score: 3.0 |
| IPR001141 | Ribosomal protein L27e | PANTHER | PTHR10497 | 60S RIBOSOMAL PROTEIN L27 | coord: 2..135
score: 1.1 |
| IPR001141 | Ribosomal protein L27e | PFAM | PF01777 | Ribosomal_L27e | coord: 52..135
score: 4.4 |
| IPR005824 | KOW | PFAM | PF00467 | KOW | coord: 7..36
score: 6. |
| IPR005824 | KOW | SMART | SM00739 | kow_9 | coord: 4..31
score: 0. |
| IPR008991 | Translation protein SH3-like domain | unknown | SSF50104 | Translation proteins SH3-like domain | coord: 2..135
score: 1.53 |
| IPR014722 | Ribosomal protein L2 domain 2 | GENE3D | G3DSA:2.30.30.30 | | coord: 3..118
score: 3.4 |
| IPR018262 | Ribosomal protein L27e, conserved site | PROSITE | PS01107 | RIBOSOMAL_L27E | coord: 124..135
scor |
| None | No IPR available | unknown | Coil | Coil | coord: 100..120
scor |
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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