MELO3C016998 (gene) Melon (DHL92) v3.5.1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ACGTCACTGGCGGCGACGCCTGCTGTTGCAGATCAGGCGGCGTGAACTGAGTCCGGCCGAGACGGTGGTTACCCAAACGGCAGTCACCTACCGGGAGCCCTGCAGCGAATTGTCAGCTTCGCAACCTCCGTGAACAGTCTGGTCATTTTTCCCATTTAAGGTGAGGTTTAATATTTTAGTCTTCGATTGATTTGTGTAAGAATTTTTTCGAAATTTGTTGTTTGGGATTTCAAATATTTTGTTTAAATAACCTTTGGAAGTAGAATAGTCTGCTGAGTGAAATGTTTTGTTTGGGTCTCAATAAAATAATTTGGAAGCAAAATTGTGTAGCAATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGGTACACACGTTTTCCTAATGTTCCCTTCTCTTTCTCTGTCTGGCATTTTCACAAACACCTTGTTATATGAACAACTGAAACTCAATTCACCATCTTGTTCTTTGTTTAGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGTACTCTTTCTTGATAGCTCTCTAACCCAATCATTCAATGATCGCTGTTCATTGATTACAATTCCTTCGCTTTTGGATTTGCAGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTTGGATTTTTAGTAGAGTTGGAAGTATTTGAAATTTATCTGAGTTGAATCATTCAATCATTATATACAATGAACAAAAACTTGTTGCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGA ACGTCACTGGCGGCGACGCCTGCTGTTGCAGATCAGGCGGCGTGAACTGAGTCCGGCCGAGACGGTGGTTACCCAAACGGCAGTCACCTACCGGGAGCCCTGCAGCGAATTGTCAGCTTCGCAACCTCCGTGAACAGTCTGGTCATTTTTCCCATTTAAGCAATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGA ATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGA MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKCA*
BLAST of MELO3C016998 vs. Swiss-Prot
Match: U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 3.4e-57 Identity = 107/159 (67.30%), Postives = 129/159 (81.13%), Query Frame = 1
BLAST of MELO3C016998 vs. Swiss-Prot
Match: SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21 Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 1
BLAST of MELO3C016998 vs. Swiss-Prot
Match: SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 PE=2 SV=2) HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20 Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1
BLAST of MELO3C016998 vs. Swiss-Prot
Match: SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp25 PE=1 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20 Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1
BLAST of MELO3C016998 vs. TrEMBL
Match: E5GCC9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 365.2 bits (936), Expect = 4.8e-98 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of MELO3C016998 vs. TrEMBL
Match: A0A0A0L4F3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652840 PE=4 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 3.9e-92 Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 1
BLAST of MELO3C016998 vs. TrEMBL
Match: A0A061FL17_THECC (Ubiquitin-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_034316 PE=4 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 4.8e-74 Identity = 134/174 (77.01%), Postives = 160/174 (91.95%), Query Frame = 1
BLAST of MELO3C016998 vs. TrEMBL
Match: A0A061FCZ7_THECC (Ubiquitin-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_034316 PE=4 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 4.8e-74 Identity = 134/174 (77.01%), Postives = 160/174 (91.95%), Query Frame = 1
BLAST of MELO3C016998 vs. TrEMBL
Match: W9S416_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011652 PE=4 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 5.5e-70 Identity = 130/175 (74.29%), Postives = 156/175 (89.14%), Query Frame = 1
BLAST of MELO3C016998 vs. TAIR10
Match: AT3G07860.1 (AT3G07860.1 Ubiquitin-like superfamily protein) HSP 1 Score: 222.6 bits (566), Expect = 1.9e-58 Identity = 107/159 (67.30%), Postives = 129/159 (81.13%), Query Frame = 1
BLAST of MELO3C016998 vs. TAIR10
Match: AT5G25340.1 (AT5G25340.1 Ubiquitin-like superfamily protein) HSP 1 Score: 80.9 bits (198), Expect = 9.1e-16 Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 1
BLAST of MELO3C016998 vs. TAIR10
Match: AT4G32270.1 (AT4G32270.1 Ubiquitin-like superfamily protein) HSP 1 Score: 74.7 bits (182), Expect = 6.5e-14 Identity = 31/89 (34.83%), Postives = 60/89 (67.42%), Query Frame = 1
BLAST of MELO3C016998 vs. NCBI nr
Match: gi|659104343|ref|XP_008452907.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X1 [Cucumis melo]) HSP 1 Score: 365.2 bits (936), Expect = 6.8e-98 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of MELO3C016998 vs. NCBI nr
Match: gi|659104345|ref|XP_008452908.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucumis melo]) HSP 1 Score: 365.2 bits (936), Expect = 6.8e-98 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of MELO3C016998 vs. NCBI nr
Match: gi|449455569|ref|XP_004145525.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]) HSP 1 Score: 345.5 bits (885), Expect = 5.6e-92 Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 1
BLAST of MELO3C016998 vs. NCBI nr
Match: gi|590594717|ref|XP_007017930.1| (Ubiquitin-like superfamily protein isoform 2 [Theobroma cacao]) HSP 1 Score: 285.4 bits (729), Expect = 6.9e-74 Identity = 134/174 (77.01%), Postives = 160/174 (91.95%), Query Frame = 1
BLAST of MELO3C016998 vs. NCBI nr
Match: gi|590594714|ref|XP_007017929.1| (Ubiquitin-like superfamily protein isoform 1 [Theobroma cacao]) HSP 1 Score: 285.4 bits (729), Expect = 6.9e-74 Identity = 134/174 (77.01%), Postives = 160/174 (91.95%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |