WMU77892 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU77892
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr1 : 13227400 .. 13227785 (-)
Sequence length	386

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GATGAAGTTAGCATCAAGAAACTGCACTACTAGCTCTGAGCACAGTGTCTCCCCACAGAAAGAGGGTGTGAATGGGTGATCTGGTGAGTGCAGATACAAGAATAAGAACTTGTGTTCATCTTCTGCTATCTTCATGGCTTCTGGGAATCGACATGCGTAAAAAAAAGGGTGCATCGAGCCATACTGGTACTGGAAACTGGTGAGGAAAGACCATTCTTCCGGGACATTTTGGTGTGTCCTGCTGCAGAATCTGATATTGGTAACTGGATGGCAGAGTCTGGTTTCTTCTTCCTCCATTCATAACTCTTGAAAATCCTCCTAATATGTTTCTTGGAAGATTAACCATCCGTCGGACCATACTGTTGATTGAGGCCTCAGCTAATCTC

Library


Library category	ESTs
watermelon fruit 34d library	1

Homology

[Close]

BLAST of WMU77892 vs. TAIR10
Match: AT4G10790.1 (AT4G10790.1 UBX domain-containing protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-13
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = -3


Query: 1   VPEEWSFLTSFQYQYGSMHPF---FYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTPSFC 60
           V E   F+  F   YGS + F   F    F +A++ +    K LF+YLHSPDHP TP FC
Sbjct: 161 VGEAMEFVALFDRDYGSNNAFKIDFVVEGFMDALQRSRSSFKLLFVYLHSPDHPDTPVFC 220

Query: 61  GETLCSELVVQFLDANFI 120
           G TLC+E VV F++ NF+
Sbjct: 221 GGTLCNEAVVAFVNENFV 238

Query: 121  180
           
Sbjct: 281  238

Query: 181  226
           
Sbjct: 341  238

[Close]

BLAST of WMU77892 vs. Swiss-Prot
Match: PUX10_ARATH (Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana GN=PUX10 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.3e-12
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = -3


Query: 1   VPEEWSFLTSFQYQYGSMHPF---FYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTPSFC 60
           V E   F+  F   YGS + F   F    F +A++ +    K LF+YLHSPDHP TP FC
Sbjct: 161 VGEAMEFVALFDRDYGSNNAFKIDFVVEGFMDALQRSRSSFKLLFVYLHSPDHPDTPVFC 220

Query: 61  GETLCSELVVQFLDANFI 120
           G TLC+E VV F++ NF+
Sbjct: 221 GGTLCNEAVVAFVNENFV 238

Query: 121  180
           
Sbjct: 281  238

Query: 181  226
           
Sbjct: 341  238

[Close]

BLAST of WMU77892 vs. Swiss-Prot
Match: FAF2B_XENLA (FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-10
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = -3


Query: 1   SRTHQNVPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTP 60
           SR    V +  SF+  F+ +YGS HP FY   + +A+  A+ E +FL +YLH  DH  + 
Sbjct: 127 SRVTDPVGDVVSFIHLFEEKYGSTHPVFYQGTYSQALNDAKQELRFLLVYLHGEDHQDSD 186

Query: 61  SFCGETLCSELVVQFLDANFI 120
            FC  TLC+  V  F+++  +
Sbjct: 187 DFCRNTLCTSEVTHFINSRML 207

Query: 121  180
           
Sbjct: 247  207

Query: 181  240
           
Sbjct: 307  207

Query: 241  244
           
Sbjct: 367  207

[Close]

BLAST of WMU77892 vs. Swiss-Prot
Match: FAF2A_XENLA (FAS-associated factor 2-A OS=Xenopus laevis GN=faf2-a PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = -3


Query: 1   SRTHQNVPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTP 60
           SR    V +  SF+  F+ +YG +HP FY   + +A+  A+ E +FL +YLH  DH  + 
Sbjct: 127 SRVTDPVGDVVSFIHLFEEKYGRIHPVFYQGTYSQALNDAKQELRFLLVYLHGEDHQDSD 186

Query: 61  SFCGETLCSELVVQFLDANFI 120
            FC  TLC+  V  F+++  +
Sbjct: 187 DFCRNTLCTPEVTHFINSRML 207

Query: 121  180
           
Sbjct: 247  207

Query: 181  240
           
Sbjct: 307  207

Query: 241  244
           
Sbjct: 367  207

[Close]

BLAST of WMU77892 vs. Swiss-Prot
Match: FAF2_XENTR (FAS-associated factor 2 OS=Xenopus tropicalis GN=faf2 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = -3


Query: 1   SRTHQNVPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTP 60
           SR    V +  SF+  F+ +YG +HP FY   + +A+  A+ E +FL +YLH  DH  + 
Sbjct: 127 SRVTDPVGDVVSFIQLFEEKYGRIHPVFYQGTYSQALNDAKQELRFLLVYLHGEDHQDSD 186

Query: 61  SFCGETLCSELVVQFLDANFI 120
            FC  TLC   V  FL++  +
Sbjct: 187 DFCRNTLCIPEVTNFLNSRML 207

Query: 121  180
           
Sbjct: 247  207

Query: 181  240
           
Sbjct: 307  207

Query: 241  244
           
Sbjct: 367  207

[Close]

BLAST of WMU77892 vs. Swiss-Prot
Match: FAF2_HUMAN (FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-09
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = -3


Query: 1   SRTHQNVPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTP 60
           SR    V +  SF+ SF+ +YG  HP FY   + +A+  A+ E +FL +YLH  DH  + 
Sbjct: 127 SRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGDDHQDSD 186

Query: 61  SFCGETLCSELVVQFLDANFI 120
            FC  TLC+  V+  ++   +
Sbjct: 187 EFCRNTLCAPEVISLINTRML 207

Query: 121  180
           
Sbjct: 247  207

Query: 181  240
           
Sbjct: 307  207

Query: 241  244
           
Sbjct: 367  207

[Close]

BLAST of WMU77892 vs. NCBI nr
Match: gi|449469558|ref|XP_004152486.1| (PREDICTED: FAS-associated factor 2-like isoform X1 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 5.8e-35
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = -3


Query: 1   VPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTPSFCGET 60
           VPEEWSFLTSFQYQYGSMHPFFYACRF EA+KIAED+ KFLFLYLHSPDHPFTPSFC ET
Sbjct: 62  VPEEWSFLTSFQYQYGSMHPFFYACRFAEALKIAEDDQKFLFLYLHSPDHPFTPSFCEET 121

Query: 61  LCSELVVQFLDANFI 120
           LCSELVVQFLDANFI
Sbjct: 122 LCSELVVQFLDANFI 136

Query: 121  180
           
Sbjct: 182  136

Query: 181  226
           
Sbjct: 242  136

[Close]

BLAST of WMU77892 vs. NCBI nr
Match: gi|659067294|ref|XP_008438685.1| (PREDICTED: LOW QUALITY PROTEIN: FAS-associated factor 2-like [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 9.9e-35
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = -3


Query: 1   VPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTPSFCGET 60
           VPEEWSFLTSFQYQYGSMHP FYACRF EA+KIAED+HKFLFLYLHSPDHPFTPSFC +T
Sbjct: 63  VPEEWSFLTSFQYQYGSMHPXFYACRFAEALKIAEDDHKFLFLYLHSPDHPFTPSFCEDT 122

Query: 61  LCSELVVQFLDANFI 120
           LCSELVVQFLDANFI
Sbjct: 123 LCSELVVQFLDANFI 137

Query: 121  180
           
Sbjct: 183  137

Query: 181  226
           
Sbjct: 243  137

[Close]

BLAST of WMU77892 vs. NCBI nr
Match: gi|747051675|ref|XP_011071927.1| (PREDICTED: FAS-associated factor 2-like [Sesamum indicum])

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-30
Identity = 58/75 (77.33%), Postives = 70/75 (93.33%), Query Frame = -3


Query: 1   VPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTPSFCGET 60
           V EEW+FL SF+ QYG+MHPFFYACRF +A+KIA+DEHKF+F+Y+HSP+HPFTPSFC ET
Sbjct: 80  VQEEWAFLASFEQQYGTMHPFFYACRFMDALKIAQDEHKFMFMYIHSPEHPFTPSFCRET 139

Query: 61  LCSELVVQFLDANFI 120
           LCSE+VVQFLDANF+
Sbjct: 140 LCSEVVVQFLDANFV 154

Query: 121  180
           
Sbjct: 200  154

Query: 181  226
           
Sbjct: 260  154

[Close]

BLAST of WMU77892 vs. NCBI nr
Match: gi|698534370|ref|XP_009763835.1| (PREDICTED: FAS-associated factor 2-like [Nicotiana sylvestris])

HSP 1 Score: 139.8 bits (351), Expect = 3.3e-30
Identity = 58/78 (74.36%), Postives = 70/78 (89.74%), Query Frame = -3


Query: 1   HQNVPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTPSFC 60
           H NV EEW+FLTSF+ QYG+ HPFFYACRF +A+KIA+DEHKFLF+YLHSP HPFTP+FC
Sbjct: 83  HSNVQEEWAFLTSFEQQYGTEHPFFYACRFMDALKIAKDEHKFLFVYLHSPQHPFTPTFC 142

Query: 61  GETLCSELVVQFLDANFI 120
            ETLC E+VV+FLDAN++
Sbjct: 143 SETLCCEVVVEFLDANYV 160

Query: 121  180
           
Sbjct: 203  160

Query: 181  235
           
Sbjct: 263  160

[Close]

BLAST of WMU77892 vs. NCBI nr
Match: gi|297733741|emb|CBI14988.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 139.0 bits (349), Expect = 5.6e-30
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = -3


Query: 1   VPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTPSFCGET 60
           VPEEW+FLTSF+ QYGS HPFFY CRF +A+K+AED+HKFLF+YLHSP HPFT SFC ET
Sbjct: 25  VPEEWAFLTSFEQQYGSSHPFFYVCRFTDALKMAEDDHKFLFMYLHSPQHPFTYSFCSET 84

Query: 61  LCSELVVQFLDANFI 120
           LCSELV QFLDANF+
Sbjct: 85  LCSELVTQFLDANFV 99

Query: 121  180
           
Sbjct: 145  99

Query: 181  226
           
Sbjct: 205  99

The following BLAST results are available for this feature:

BLAST of WMU77892 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10790.1	3.0e-13	46.15	UBX domain-containing protein	[more]

BLAST of WMU77892 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PUX10_ARATH	5.3e-12	46.15	Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana GN=PUX10 PE=2 SV=...	[more]
FAF2B_XENLA	6.4e-10	37.04	FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1	[more]
FAF2A_XENLA	1.9e-09	35.80	FAS-associated factor 2-A OS=Xenopus laevis GN=faf2-a PE=2 SV=1	[more]
FAF2_XENTR	1.9e-09	37.04	FAS-associated factor 2 OS=Xenopus tropicalis GN=faf2 PE=2 SV=1	[more]
FAF2_HUMAN	4.2e-09	35.80	FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2	[more]

BLAST of WMU77892 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469558\|ref\|XP_004152486.1\|	5.8e-35	93.33	PREDICTED: FAS-associated factor 2-like isoform X1 [Cucumis sativus]	[more]
gi\|659067294\|ref\|XP_008438685.1\|	9.9e-35	92.00	PREDICTED: LOW QUALITY PROTEIN: FAS-associated factor 2-like [Cucumis melo]	[more]
gi\|747051675\|ref\|XP_011071927.1\|	2.5e-30	77.33	PREDICTED: FAS-associated factor 2-like [Sesamum indicum]	[more]
gi\|698534370\|ref\|XP_009763835.1\|	3.3e-30	74.36	PREDICTED: FAS-associated factor 2-like [Nicotiana sylvestris]	[more]
gi\|297733741\|emb\|CBI14988.3\|	5.6e-30	78.67	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR012336	Thioredoxin-like_fold

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla003450	Cla003450	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S4_0153781	S4_0153781	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 24..99 score: 1.03
None	No IPR available	PANTHER	PTHR23322	FAS-ASSOCIATED PROTEIN	coord: 25..99 score: 3.6
None	No IPR available	PANTHER	PTHR23322:SF32	SUBFAMILY NOT NAMED	coord: 25..99 score: 3.6