WMU63230 (transcribed_cluster) Watermelon (97103) v1

NameWMU63230
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRING/U-box superfamily protein
LocationChr1 : 10163993 .. 10164324 (+)
Sequence length343
The following sequences are available for this feature:

transcribed_cluster sequence

TTATAGGTCAGACACCCACTTGGGAATTGGGTCGGGTCGGGCCAGTAGGGCTTCGATCCAGGAAATGGAGAGAATTGAAATTGATGGGGTTTGGGTTGATTGTGTGATCTGTTTGGATGAGATTGATCCAATTGGGTATGAAATTGATGCTGTTCGAATGTCTTGTTTACATGTTTATCATCGAAATTGTATTCACAAATGGCTAGAACTCAGTAATCGTTGCCCTCTGTGTCGGTTTCAGATGCCATTGGAAGAAGAATGATGCTCTGTTTTTCTTCTCGTTCGATTCTGTAATATATTTTACTTTTCTTTATTGGGGTTTTTTCTTTTTTTTTCGTTTAGG
BLAST of WMU63230 vs. TAIR10
Match: AT1G26800.1 (AT1G26800.1 RING/U-box superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 5.0e-12
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 2

Query: 29  GSGRASRASIQEMERIEIDGVWVDCVICLDEIDPIGYEIDAVRMSCLHVYHRNCIHKWLE 88
           G   AS+ASI  M  +EIDG   +CVICL+E      E     M C H +H  CI KWL 
Sbjct: 89  GRPPASKASIDAMPIVEIDGCEGECVICLEEWKS---EETVKEMPCKHRFHGGCIEKWLG 148

Query: 89  LSNRCPLCRFQMPLE 148
               CP+CR++MP++
Sbjct: 149 FHGSCPVCRYEMPVD 160

Query: 149 208
           
Sbjct: 209 160

Query: 209 254
           
Sbjct: 269 160

BLAST of WMU63230 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-10
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 2

Query: 29  GSGRASRASIQEMERIEID----GVWVDCVICLDEIDPIGYEIDAVRMSCLHVYHRNCIH 88
           G+  AS+++I+ + R+EI     G   +C +C +  +    E +A  M C H++H +CI 
Sbjct: 171 GNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFET---ETEAREMPCKHLFHDDCIV 230

Query: 89  KWLELSNRCPLCRFQMPLE 148
            WL + N CP+CRF++P E
Sbjct: 231 PWLSIRNSCPVCRFELPSE 246

Query: 149 208
           
Sbjct: 291 246

Query: 209 254
           
Sbjct: 351 246

BLAST of WMU63230 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-10
Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 2

Query: 29  GSGRASRASIQEMERIEIDGVWV-----DCVICLDEIDPIGYEIDAVRMSCLHVYHRNCI 88
           G+  AS+++I  +  +++    +      C +C+DE +      D  +M C HV+H++C+
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGS---DVKQMPCKHVFHQDCL 246

Query: 89  HKWLELSNRCPLCRFQMPLEE 148
             WLEL N CP+CRF++P ++
Sbjct: 247 LPWLELHNSCPVCRFELPTDD 264

Query: 149 208
           
Sbjct: 307 264

Query: 209 257
           
Sbjct: 367 264

BLAST of WMU63230 vs. TAIR10
Match: AT3G14970.1 (AT3G14970.1 RING/U-box superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-09
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 2

Query: 41  ASRASIQEMERIEIDGV-WVDCVICLDEIDPIGYEIDAVRMSCLHVYHRNCIHKWLELSN 100
           ++ A  Q +E + ++   W  CVIC+D+I  IG ++ A RM C HV+HR C   WL  S 
Sbjct: 153 SNEAVEQHLETVVVENESW--CVICMDKIR-IGLDVAAGRMPCSHVFHRTCGEDWLRCSG 212

Query: 101 RCPLCRFQMP 160
            CP+CR   P
Sbjct: 213 ICPVCRAMFP 219

Query: 161 220
           
Sbjct: 273 219

Query: 221 248
           
Sbjct: 333 219

BLAST of WMU63230 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-09
Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 2

Query: 29  GSGRASRASIQEMERIEIDGVWV----DCVICLDEIDPIGYEIDAVRMSCLHVYHRNCIH 88
           G+  AS+++I+ + R+EI         +C +C +  +     I+   M C H++H +CI 
Sbjct: 187 GNPPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEA---GIEGREMPCKHIFHGDCIV 246

Query: 89  KWLELSNRCPLCRFQMP 148
            WL + N CP+CRF++P
Sbjct: 247 PWLSIRNSCPVCRFELP 260

Query: 149 208
           
Sbjct: 307 260

Query: 209 248
           
Sbjct: 367 260

BLAST of WMU63230 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.7e-09
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 2

Query: 29  GSGRASRASIQEMERIEID----GVWVDCVICLDEIDPIGYEIDAVRMSCLHVYHRNCIH 88
           G+  AS+++I+ + R+EI     G   +C +C +  +    E +A  M C H++H +CI 
Sbjct: 171 GNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFET---ETEAREMPCKHLFHDDCIV 230

Query: 89  KWLELSNRCPLCRFQMPLE 148
            WL + N CP+CRF++P E
Sbjct: 231 PWLSIRNSCPVCRFELPSE 246

Query: 149 208
           
Sbjct: 291 246

Query: 209 254
           
Sbjct: 351 246

BLAST of WMU63230 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.3e-09
Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 2

Query: 29  GSGRASRASIQEMERIEIDGVWV-----DCVICLDEIDPIGYEIDAVRMSCLHVYHRNCI 88
           G+  AS+++I  +  +++    +      C +C+DE +      D  +M C HV+H++C+
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGS---DVKQMPCKHVFHQDCL 246

Query: 89  HKWLELSNRCPLCRFQMPLEE 148
             WLEL N CP+CRF++P ++
Sbjct: 247 LPWLELHNSCPVCRFELPTDD 264

Query: 149 208
           
Sbjct: 307 264

Query: 209 257
           
Sbjct: 367 264

BLAST of WMU63230 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-08
Identity = 25/81 (30.86%), Postives = 47/81 (58.02%), Query Frame = 2

Query: 29  GSGRASRASIQEMERIEI-----DGVWVDCVICLDEIDPIGYEIDAVRMSCLHVYHRNCI 88
           G+  AS+++I+ +  + I     +  +  C +C+D+ +      +A +M C H+YH++C+
Sbjct: 195 GTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEE---GTEAKQMPCKHLYHKDCL 254

Query: 89  HKWLELSNRCPLCRFQMPLEE 148
             WLEL N CP+CR ++P ++
Sbjct: 255 LPWLELHNSCPVCRHELPTDD 272

Query: 149 208
           
Sbjct: 315 272

Query: 209 257
           
Sbjct: 375 272

BLAST of WMU63230 vs. Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-08
Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = 2

Query: 41  ASRASIQEMERIEIDGVWVD--CVICLDEIDPIGYEIDAVRMSCLHVYHRNCIHKWLELS 100
           A++ +++ + R  I G   +  C +CL E +    E  A+ M C H++H NCI  WL  +
Sbjct: 54  AAKTAVENLPRTVIRGSQAELKCPVCLLEFEE---EETAIEMPCHHLFHSNCILPWLSKT 113

Query: 101 NRCPLCRFQMPLEEE 160
           N CPLCR ++P +++
Sbjct: 114 NSCPLCRHELPTDDD 125

Query: 161 220
           
Sbjct: 174 125

Query: 221 260
           
Sbjct: 234 125

BLAST of WMU63230 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-08
Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 2

Query: 29  GSGRASRASIQEMERIEIDGVWV----DCVICLDEIDPIGYEIDAVRMSCLHVYHRNCIH 88
           G+  AS+++I+ + R+EI         +C +C +  +     I+   M C H++H +CI 
Sbjct: 187 GNPPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEA---GIEGREMPCKHIFHGDCIV 246

Query: 89  KWLELSNRCPLCRFQMP 148
            WL + N CP+CRF++P
Sbjct: 247 PWLSIRNSCPVCRFELP 260

Query: 149 208
           
Sbjct: 307 260

Query: 209 248
           
Sbjct: 367 260

BLAST of WMU63230 vs. NCBI nr
Match: gi|659067058|ref|XP_008437461.1| (PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-36
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 2

Query: 2   YRSDTHLGIGSGRASRASIQEMERIEIDGVWVDCVICLDEIDPIGYEIDAVRMSCLHVYH 61
           Y S+ H+GIGSGRASRASIQEMERIEIDGV  DCVICLDEI  IG EIDAVRM CLHVYH
Sbjct: 138 YGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCEIDAVRMPCLHVYH 197

Query: 62  RNCIHKWLELSNRCPLCRFQMPLEEE 121
            NCIHKWLELSNRCPLCRFQMPLEEE
Sbjct: 198 LNCIHKWLELSNRCPLCRFQMPLEEE 223

Query: 122 181
           
Sbjct: 258 223

Query: 182 241
           
Sbjct: 318 223

Query: 242 260
           
Sbjct: 378 223

BLAST of WMU63230 vs. NCBI nr
Match: gi|449469653|ref|XP_004152533.1| (PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-35
Identity = 73/86 (84.88%), Postives = 76/86 (88.37%), Query Frame = 2

Query: 2   YRSDTHLGIGSGRASRASIQEMERIEIDGVWVDCVICLDEIDPIGYEIDAVRMSCLHVYH 61
           Y S+ H+GIGSGRASRASIQEMERIEIDGV  DCVICLDEI  IG EID V+M CLHVYH
Sbjct: 138 YGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCEIDVVQMPCLHVYH 197

Query: 62  RNCIHKWLELSNRCPLCRFQMPLEEE 121
            NCIHKWLELSNRCPLCRFQMPLEEE
Sbjct: 198 LNCIHKWLELSNRCPLCRFQMPLEEE 223

Query: 122 181
           
Sbjct: 258 223

Query: 182 241
           
Sbjct: 318 223

Query: 242 260
           
Sbjct: 378 223

BLAST of WMU63230 vs. NCBI nr
Match: gi|645269135|ref|XP_008239859.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Prunus mume])

HSP 1 Score: 83.2 bits (204), Expect = 3.3e-13
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 2

Query: 32  SGRASRASIQEMERIEIDGVWVDCVICLDEIDPIGYEIDAVRMSCLHVYHRNCIHKWLEL 91
           S RA +++I E+E+++++G    CVICL+EI       +A RM C HVYH +CI  WLE 
Sbjct: 146 SVRARKSAIDELEKVKVEGCAKPCVICLEEIVNGS---EATRMPCFHVYHESCIGNWLEK 205

Query: 92  SNRCPLCRFQMPLE 151
           S+ CPLCRF+MP+E
Sbjct: 206 SHLCPLCRFEMPVE 216

Query: 152 211
           
Sbjct: 266 216

Query: 212 254
           
Sbjct: 326 216

BLAST of WMU63230 vs. NCBI nr
Match: gi|595851940|ref|XP_007210215.1| (hypothetical protein PRUPE_ppa016054mg, partial [Prunus persica])

HSP 1 Score: 81.6 bits (200), Expect = 9.5e-13
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 2

Query: 38  RASRASIQEMERIEIDGVWVDCVICLDEIDPIGYEIDAVRMSCLHVYHRNCIHKWLELSN 97
           RA +++I E+E+++++G    CVICL+EI       +A RM C HVYH +CI  WLE S+
Sbjct: 134 RARKSAIDELEKVKVEGCAKPCVICLEEIVNGS---EATRMPCFHVYHESCIVNWLEKSH 193

Query: 98  RCPLCRFQMPLE 157
            CPLCRF+MP E
Sbjct: 194 LCPLCRFEMPAE 202

Query: 158 217
           
Sbjct: 254 202

Query: 218 254
           
Sbjct: 314 202

BLAST of WMU63230 vs. NCBI nr
Match: gi|702281757|ref|XP_010045575.1| (PREDICTED: uncharacterized protein LOC104434326 [Eucalyptus grandis])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 2

Query: 29  GSGRASRASIQEMERIEIDGVWVD-CVICLDEIDPIGYEIDAVRMSCLHVYHRNCIHKWL 88
           GSG AS +SIQ +E++++ G   + CVICLD I  +G E  AVRM CLH YH  CI  WL
Sbjct: 150 GSGAASWSSIQALEKVKVGGGSEEKCVICLDRI-MVGSE--AVRMPCLHNYHEECIVNWL 209

Query: 89  ELSNRCPLCRFQMPL 148
           + SN CPLCRF MP+
Sbjct: 210 QRSNLCPLCRFPMPM 221

Query: 149 208
           
Sbjct: 270 221

Query: 209 251
           
Sbjct: 330 221

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G26800.15.0e-1244.00 RING/U-box superfamily protein[more]
AT5G59550.12.1e-1035.44 zinc finger (C3HC4-type RING finger) family protein[more]
AT3G19950.14.7e-1032.10 RING/U-box superfamily protein[more]
AT3G14970.14.0e-0941.43 RING/U-box superfamily protein[more]
AT3G46620.14.0e-0932.47 zinc finger (C3HC4-type RING finger) family protein[more]
Match NameE-valueIdentityDescription
RDUF2_ARATH3.7e-0935.44E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
RNG1L_ARATH8.3e-0932.10E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RING1_GOSHI1.8e-0830.86E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RN181_BOVIN5.4e-0834.67E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1[more]
RDUF1_ARATH7.0e-0832.47E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
gi|659067058|ref|XP_008437461.1|1.6e-3687.21PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo][more]
gi|449469653|ref|XP_004152533.1|1.4e-3584.88PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucum... [more]
gi|645269135|ref|XP_008239859.1|3.3e-1350.00PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Prunus mume][more]
gi|595851940|ref|XP_007210215.1|9.5e-1350.00hypothetical protein PRUPE_ppa016054mg, partial [Prunus persica][more]
gi|702281757|ref|XP_010045575.1|1.2e-1256.00PREDICTED: uncharacterized protein LOC104434326 [Eucalyptus grandis][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla008349Cla008349gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0087108S2_0087108EST