WMU52386 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU52386
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Exosome complex component RRP42
Location	Chr4 : 6127864 .. 6129788 (-)
Sequence length	321

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCATTACGGCTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCAACCCGAAAGTCCACGTTGCTGCAGAAGCATCAGCCAACGAACAACCTGAAGTCGATATAAGTGATGAAGAATTTCTACAGTTCGACACATACTAGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCATTAACAGGCATGGTCACATTTTGCGGGTTGACAAAACGCGGGGGTGCAGGGGTCGATCCAAGCATAATCCTCGATA

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU52386 vs. TAIR10
Match: AT3G07750.1 (AT3G07750.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 80.9 bits (198), Expect = 5.3e-16
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 3


Query: 12  GAAIKAALSNTGNPKVHVAAEASANEQPEVDISDEEFLQFDTY*GFQP*LH*QRWVSTTS 71
           GAAIKAAL+NT  PKV+V+AE + +EQPE+DISDEE+LQFDT     P +     V T  
Sbjct: 155 GAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDT--SSVPVIVTLTKVGTHY 214

Query: 72  LMLLW---KKNLK*ALQSPYPLTGMVTFCGLTKRGGAGVDPSIILD 131
           ++      +  +  A+      TG +  CGLTKR G+G+DPS+ILD
Sbjct: 215 IVDATAEEESQMSSAVSISVNRTGHI--CGLTKRSGSGLDPSVILD 256

Query: 132  191
           
Sbjct: 275  256

Query: 192  251
           
Sbjct: 335  256

Query: 252  311
           
Sbjct: 395  256

Query: 312  321
           
Sbjct: 455  256

[Close]

BLAST of WMU52386 vs. NCBI nr
Match: gi|659081317|ref|XP_008441268.1| (PREDICTED: exosome complex component RRP42-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 7.7e-17
Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 3


Query: 12  GAAIKAALSNTGNPKVHVAAEASANEQPEVDISDEEFLQFDTY*GFQP*LH*QRWVSTTS 71
           GAAIKAALSNTG PKVH+AAEAS NEQPEVD+SDEEF+QF+T                 +
Sbjct: 156 GAAIKAALSNTGIPKVHIAAEASGNEQPEVDVSDEEFIQFET-------------SGVPA 215

Query: 72  LMLLWKKN----LK*ALQSPYPLTGMVT--------FCGLTKRGGAGVDPSIILD 131
           ++ L K      +   L+    ++  V+         CGLTKRGG GVDPSIILD
Sbjct: 216 IVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHICGLTKRGGVGVDPSIILD 257

Query: 132  191
           
Sbjct: 276  257

Query: 192  251
           
Sbjct: 336  257

Query: 252  311
           
Sbjct: 396  257

Query: 312  321
           
Sbjct: 456  257

[Close]

BLAST of WMU52386 vs. NCBI nr
Match: gi|778655595|ref|XP_004151651.2| (PREDICTED: exosome complex component RRP42 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 60/112 (53.57%), Postives = 69/112 (61.61%), Query Frame = 3


Query: 12  GAAIKAALSNTGNPKVHVAAEASANEQPEVDISDEEFLQFDTY*GFQP*LH*QRWVSTTS 71
           GAAIKAALSNTG PKVHVAAEA  NEQPEVD+SDEEFLQFDT              +  +
Sbjct: 156 GAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDT----------SGVPAIVT 215

Query: 72  LMLLWKKNLK*A-LQSPYPLTGMVT--------FCGLTKRGGAGVDPSIILD 131
           L  + K  +  A L+    ++  V+         CGLTKRGG GVDPSIILD
Sbjct: 216 LTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILD 257

Query: 132  191
           
Sbjct: 276  257

Query: 192  251
           
Sbjct: 336  257

Query: 252  311
           
Sbjct: 396  257

Query: 312  321
           
Sbjct: 456  257

[Close]

BLAST of WMU52386 vs. NCBI nr
Match: gi|702422175|ref|XP_010066997.1| (PREDICTED: exosome complex component RRP42-like [Eucalyptus grandis])

HSP 1 Score: 93.6 bits (231), Expect = 2.2e-16
Identity = 58/106 (54.72%), Postives = 70/106 (66.04%), Query Frame = 3


Query: 12  GAAIKAALSNTGNPKVHVAAEASANEQPEVDISDEEFLQFDTY*GFQP*LH*QRWVSTTS 71
           GAAIKAALSNTG P+VHVAAEAS  +QPE+DISDEEFLQFDT     P +     V    
Sbjct: 156 GAAIKAALSNTGIPRVHVAAEASGEDQPELDISDEEFLQFDT--SGVPVIVTLTKVGRHY 215

Query: 72  LM---LLWKKNLK*ALQSPYPLTGMVTFCGLTKRGGAGVDPSIILD 131
           ++   L  +  +  AL       G++  CGLTKRGGAG+DPS+ILD
Sbjct: 216 IVDATLDEESEMSSALSVSINRKGLI--CGLTKRGGAGLDPSVILD 257

Query: 132  191
           
Sbjct: 276  257

Query: 192  251
           
Sbjct: 336  257

Query: 252  311
           
Sbjct: 396  257

Query: 312  321
           
Sbjct: 456  257

[Close]

BLAST of WMU52386 vs. NCBI nr
Match: gi|645247596|ref|XP_008229909.1| (PREDICTED: exosome complex component RRP42-like [Prunus mume])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 58/112 (51.79%), Postives = 69/112 (61.61%), Query Frame = 3


Query: 12  GAAIKAALSNTGNPKVHVAAEASANEQPEVDISDEEFLQFDTY*GFQP*LH*QRWVSTTS 71
           GAAIKAALSNTG PKV+VAA AS NEQPEVD+SDEEFLQFDT           R     +
Sbjct: 156 GAAIKAALSNTGIPKVNVAAGASGNEQPEVDVSDEEFLQFDT----------SRVPVIVT 215

Query: 72  LMLLWKKNLK*AL-QSPYPLTGMVT--------FCGLTKRGGAGVDPSIILD 131
           L  + +  +  A  +    ++  V+         CGLTKRGGAG+DPSIILD
Sbjct: 216 LTKVGRHYIVDATSEEESQMSSAVSISINRQGHICGLTKRGGAGLDPSIILD 257

Query: 132  191
           
Sbjct: 276  257

Query: 192  251
           
Sbjct: 336  257

Query: 252  311
           
Sbjct: 396  257

Query: 312  321
           
Sbjct: 456  257

[Close]

BLAST of WMU52386 vs. NCBI nr
Match: gi|595827039|ref|XP_007205672.1| (hypothetical protein PRUPE_ppa009541mg [Prunus persica])

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-15
Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 3


Query: 12  GAAIKAALSNTGNPKVHVAAEASANEQPEVDISDEEFLQFDTY*GFQP*LH*QRWVSTTS 71
           GAAIKAALSNTG PKV+VAA AS +EQPEVD+SDEEFLQFDT     P +     V    
Sbjct: 156 GAAIKAALSNTGIPKVNVAAGASGDEQPEVDVSDEEFLQFDT--SRVPVIVTLTKVGRHY 215

Query: 72  LM-LLWKKNLK*ALQSPYPLTGMVTFCGLTKRGGAGVDPSIILD 131
           ++    ++  +  L     +      CGLTKRGGAG+DPSIILD
Sbjct: 216 IVDATSEEESQMCLAVSISINRQGHICGLTKRGGAGLDPSIILD 257

Query: 132  191
           
Sbjct: 276  257

Query: 192  251
           
Sbjct: 336  257

Query: 252  311
           
Sbjct: 396  257

Query: 312  321
           
Sbjct: 456  257

The following BLAST results are available for this feature:

BLAST of WMU52386 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07750.1	5.3e-16	48.11	3'-5'-exoribonuclease family protein	[more]

BLAST of WMU52386 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081317\|ref\|XP_008441268.1\|	7.7e-17	49.57	PREDICTED: exosome complex component RRP42-like [Cucumis melo]	[more]
gi\|778655595\|ref\|XP_004151651.2\|	1.0e-16	53.57	PREDICTED: exosome complex component RRP42 [Cucumis sativus]	[more]
gi\|702422175\|ref\|XP_010066997.1\|	2.2e-16	54.72	PREDICTED: exosome complex component RRP42-like [Eucalyptus grandis]	[more]
gi\|645247596\|ref\|XP_008229909.1\|	1.1e-15	51.79	PREDICTED: exosome complex component RRP42-like [Prunus mume]	[more]
gi\|595827039\|ref\|XP_007205672.1\|	2.5e-15	53.85	hypothetical protein PRUPE_ppa009541mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR015847	ExoRNase_PH_dom2

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla011681	Cla011681	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0068340	S1_0068340	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 50..103 score: 1.
IPR015847	Exoribonuclease, phosphorolytic domain 2	unknown	SSF55666	Ribonuclease PH domain 2-like	coord: 48..107 score: 1.82
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 6..107 score: 8.4
None	No IPR available	PANTHER	PTHR11097:SF8	EXOSOME COMPLEX COMPONENT RRP42	coord: 6..107 score: 8.4