MELO3C019176 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019176
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ubiquitin carboxyl-terminal hydrolase
Location	chr8 : 13809768 .. 13809926 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTGTAAAGTGGCAAAAAGAGTTGTTTCGTGATGTTGAAATTGATACCAGTCTGCCCCCATATTATTTGAAAGGCCAGTTGTTTAAACTCACCGGTGTGCCTCCTGAACGGCAGAAGATTATGATTAAGGGTTGTATACTAAAGGTTACTTGA

mRNA sequence

ATGGTGAGTGTAAAGTGGCAAAAAGAGTTGTTTCGTGATGTTGAAATTGATACCAGTCTGCCCCCATATTATTTGAAAGGCCAGTTGTTTAAACTCACCGGTGTGCCTCCTGAACGGCAGAAGATTATGATTAAGGGTTGTATACTAAAGGTTACTTGA

Coding sequence (CDS)

ATGGTGAGTGTAAAGTGGCAAAAAGAGTTGTTTCGTGATGTTGAAATTGATACCAGTCTGCCCCCATATTATTTGAAAGGCCAGTTGTTTAAACTCACCGGTGTGCCTCCTGAACGGCAGAAGATTATGATTAAGGGTTGTATACTAAAGGTTACTTGA

Protein sequence

MVSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILKVT*

Homology

[Close]

BLAST of MELO3C019176 vs. Swiss-Prot
Match: UBP6_ARATH (Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana GN=UBP6 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-13
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQK++   +EID SLPPY  K QL+ LTGVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176 vs. Swiss-Prot
Match: UBP7_ARATH (Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana GN=UBP7 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-13
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQK++F  +EIDTS PP+  K QL+ L+GVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176 vs. Swiss-Prot
Match: UBP14_BOVIN (Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus GN=USP14 PE=2 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-09
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          V+VKW KE F  VE++T  PP   K QLF LTGV P RQK+M+KG  LK
Sbjct: 6  VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK 54

[Close]

BLAST of MELO3C019176 vs. Swiss-Prot
Match: UBP14_HUMAN (Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-09
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          V+VKW KE F  VE++T  PP   K QLF LTGV P RQK+M+KG  LK
Sbjct: 6  VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK 54

[Close]

BLAST of MELO3C019176 vs. Swiss-Prot
Match: UBP14_MOUSE (Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus GN=Usp14 PE=1 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-09
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          V+VKW KE F  VE++T  PP   K QLF LTGV P RQK+M+KG  LK
Sbjct: 6  VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK 54

[Close]

BLAST of MELO3C019176 vs. TrEMBL
Match: A0A0A0K9N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G451940 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELFRDVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELFRDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176 vs. TrEMBL
Match: A0A072TN68_MEDTR (Ubiquitin carboxyl-terminal hydrolase OS=Medicago truncatula GN=MTR_8g015660 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.6e-14
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 1   MVSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
           +VSVKWQKELF+DVEIDTS PPY  K QLF LTGVPPERQKIM+KG +LK
Sbjct: 77  IVSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLK 126

[Close]

BLAST of MELO3C019176 vs. TrEMBL
Match: G8A2S7_MEDTR (Ubiquitin carboxyl-terminal hydrolase OS=Medicago truncatula GN=MTR_138s0025 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.7e-14
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELF+DVEIDTS PPY  K QLF LTGVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176 vs. TrEMBL
Match: S8CD92_9LAMI (Ubiquitin carboxyl-terminal hydrolase (Fragment) OS=Genlisea aurea GN=M569_12379 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-13
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELF  VEIDT+LPPY  K QLF LTGVPPERQKIMIKG +LK
Sbjct: 8  VSVKWQKELFSKVEIDTNLPPYVFKCQLFDLTGVPPERQKIMIKGTLLK 56

[Close]

BLAST of MELO3C019176 vs. TrEMBL
Match: I3STU8_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-13
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELF+DVEID S PPY  K QLF LTGVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKELFKDVEIDASQPPYVFKCQLFDLTGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176 vs. TAIR10
Match: AT1G51710.1 (AT1G51710.1 ubiquitin-specific protease 6)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQK++   +EID SLPPY  K QL+ LTGVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176 vs. TAIR10
Match: AT3G21280.1 (AT3G21280.1 ubiquitin-specific protease 7)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-14
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 2   VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
           VSVKWQK++F  +EIDTS PP+  K QL+ L+GVPPERQKIM+KG +LK
Sbjct: 59  VSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLK 107

[Close]

BLAST of MELO3C019176 vs. NCBI nr
Match: gi|449447838|ref|XP_004141674.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELFRDVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELFRDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176 vs. NCBI nr
Match: gi|659124828|ref|XP_008462369.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELFRDVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELFRDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176 vs. NCBI nr
Match: gi|922332540|ref|XP_013444261.1| (ubiquitin carboxyl-terminal hydrolase [Medicago truncatula])

HSP 1 Score: 84.7 bits (208), Expect = 5.2e-14
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 1   MVSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
           +VSVKWQKELF+DVEIDTS PPY  K QLF LTGVPPERQKIM+KG +LK
Sbjct: 77  IVSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLK 126

[Close]

BLAST of MELO3C019176 vs. NCBI nr
Match: gi|502156184|ref|XP_004510348.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Cicer arietinum])

HSP 1 Score: 84.3 bits (207), Expect = 6.8e-14
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELF+DVEIDTS PPY  K QLF LTGVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176 vs. NCBI nr
Match: gi|527191679|gb|EPS62411.1| (ubiquitin carboxyl-terminal hydrolase, partial [Genlisea aurea])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-13
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELF  VEIDT+LPPY  K QLF LTGVPPERQKIMIKG +LK
Sbjct: 8  VSVKWQKELFSKVEIDTNLPPYVFKCQLFDLTGVPPERQKIMIKGTLLK 56

The following BLAST results are available for this feature:

BLAST of MELO3C019176 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBP6_ARATH	2.6e-13	69.39	Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana GN=UBP6 PE=1 SV=...	[more]
UBP7_ARATH	2.6e-13	67.35	Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana GN=UBP7 PE=1 SV=...	[more]
UBP14_BOVIN	3.9e-09	59.18	Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus GN=USP14 PE=2 SV=3	[more]
UBP14_HUMAN	3.9e-09	59.18	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	[more]
UBP14_MOUSE	3.9e-09	59.18	Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus GN=Usp14 PE=1 SV=3	[more]

BLAST of MELO3C019176 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9N4_CUCSA	1.3e-16	89.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G451940 PE=3 SV=1	[more]
A0A072TN68_MEDTR	3.6e-14	80.00	Ubiquitin carboxyl-terminal hydrolase OS=Medicago truncatula GN=MTR_8g015660 PE=...	[more]
G8A2S7_MEDTR	4.7e-14	81.63	Ubiquitin carboxyl-terminal hydrolase OS=Medicago truncatula GN=MTR_138s0025 PE=...	[more]
S8CD92_9LAMI	1.4e-13	81.63	Ubiquitin carboxyl-terminal hydrolase (Fragment) OS=Genlisea aurea GN=M569_12379...	[more]
I3STU8_MEDTR	1.8e-13	79.59	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]

BLAST of MELO3C019176 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G51710.1	1.5e-14	69.39	ubiquitin-specific protease 6	[more]
AT3G21280.1	1.5e-14	67.35	ubiquitin-specific protease 7	[more]

BLAST of MELO3C019176 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447838\|ref\|XP_004141674.1\|	1.9e-16	89.80	PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Cucumis sativus]	[more]
gi\|659124828\|ref\|XP_008462369.1\|	1.9e-16	89.80	PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Cucumis melo]	[more]
gi\|922332540\|ref\|XP_013444261.1\|	5.2e-14	80.00	ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]	[more]
gi\|502156184\|ref\|XP_004510348.1\|	6.8e-14	81.63	PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Cicer arietinum]	[more]
gi\|527191679\|gb\|EPS62411.1\|	2.0e-13	81.63	ubiquitin carboxyl-terminal hydrolase, partial [Genlisea aurea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016571	histone methylation
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0004843	thiol-dependent ubiquitin-specific protease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019176T1	MELO3C019176T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 2..50 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019176	Cucurbita moschata (Rifu)	cmomeB601
MELO3C019176	Cucurbita moschata (Rifu)	cmomeB794
MELO3C019176	Wild cucumber (PI 183967)	cpimeB331
MELO3C019176	Cucumber (Chinese Long) v2	cumeB272
MELO3C019176	Watermelon (Charleston Gray)	mewcgB534
MELO3C019176	Watermelon (97103) v1	mewmB580
MELO3C019176	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C019176	Cucumber (Gy14) v2	cgybmeB286
MELO3C019176	Cucumber (Chinese Long) v3	cucmeB337
MELO3C019176	Watermelon (97103) v2	mewmbB544
MELO3C019176	Cucumber (Gy14) v1	cgymeB449
MELO3C019176	Cucurbita maxima (Rimu)	cmameB613
MELO3C019176	Cucurbita maxima (Rimu)	cmameB810