WMU42360 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU42360
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Light-repressed protein A
Location	Chr2 : 2027757 .. 2029370 (-)
Sequence length	701

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACCTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGAGATTAACATCTTATAATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAACAGAAAATGGCAAAAGCTGAGAAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGATGGGAGTTCACGGAGGAATTTTCATGTTCTAGATATCTTGCCACTGTTACATTCGCTTAAGACTGCAAAACTTCGACTTCAACATGCATCTGAAGGCCTTTCTTGTAGAGAGTATATAGATTTTAGATTTGAGGTTATTTGGTGATGAAGACAATATTGGAACAAGAAATCAGTAAAAGTAAAATGAGATGCAAAAAGTATTCTATGGAATGAATGATTCAGCTTGCAGGGGTGTTACCATGAAAATATACTGTTTTCTTTTGTAATAATGGTTTCTTTTCCCCTAGCGTGGCCAGCTCTGTTTATATTGTTGGTAGTTGAATATTGATTCGTCTTTCTTCCTTTACCT

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 18d library	1
watermelon fruit 26d library	4

Homology

[Close]

BLAST of WMU42360 vs. NCBI nr
Match: gi|659121787|ref|XP_008460813.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 47/101 (46.53%), Postives = 59/101 (58.42%), Query Frame = 3


Query: 3   MKGFDRLKVREPAPIVVGDEDEEVFQEDGWRSY**DCSDKIPRYATFDS*RSN*TTQKIL 62
           +KGFDR KVREPAPIVV DE+EEVFQEDG      +  D+I R   FD      T ++ +
Sbjct: 197 VKGFDRSKVREPAPIVVEDEEEEVFQEDGG-----EVIDEIVRTKYFD--MPPLTVEEAI 256

Query: 63  TMISMV------FGMKKLVRLTSYNKRKDGGYGLIIPTENG 122
             +  +      F  ++   +    KRKDGGYGLIIP ENG
Sbjct: 257 EQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG 290

Query: 123  182
           
Sbjct: 317  290

Query: 183  242
           
Sbjct: 377  290

Query: 243  288
           
Sbjct: 437  290

[Close]

BLAST of WMU42360 vs. NCBI nr
Match: gi|449459188|ref|XP_004147328.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 47/101 (46.53%), Postives = 59/101 (58.42%), Query Frame = 3


Query: 3   MKGFDRLKVREPAPIVVGDEDEEVFQEDGWRSY**DCSDKIPRYATFDS*RSN*TTQKIL 62
           +KGFDR KVREPAPIVV DE+EEVFQEDG      +  D+I R   FD      T ++ +
Sbjct: 197 VKGFDRSKVREPAPIVVEDEEEEVFQEDGG-----EVIDEIVRTKYFD--MPPLTVEEAI 256

Query: 63  TMISMV------FGMKKLVRLTSYNKRKDGGYGLIIPTENG 122
             +  +      F  ++   +    KRKDGGYGLIIP ENG
Sbjct: 257 EQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG 290

Query: 123  182
           
Sbjct: 317  290

Query: 183  242
           
Sbjct: 377  290

Query: 243  288
           
Sbjct: 437  290

The following BLAST results are available for this feature:

BLAST of WMU42360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121787\|ref\|XP_008460813.1\|	1.3e-11	46.53	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo]	[more]
gi\|449459188\|ref\|XP_004147328.1\|	1.3e-11	46.53	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla007861	Cla007861	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0068878	S1_0068878	EST
S1_0138561	S1_0138561	EST
S2_0180008	S2_0180008	EST
S3_0013800	S3_0013800	EST
S3_0015474	S3_0015474	EST
S3_0015885	S3_0015885	EST
S3_0025200	S3_0025200	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33231	FAMILY NOT NAMED	coord: 2..57 score: 2.4
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN-RELATED	coord: 2..57 score: 2.4