Cla004159 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004159
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	T-complex protein 1 subunit alpha (AHRD V1 ***- B9SF60_RICCO); contains Interpro domain(s) IPR012715 T-complex protein 1, alpha subunit
Location	Chr11 : 6772470 .. 6773770 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGGAGGAAACCTTCGAGCCATCACATCTTGGATATGCTGATGAGGTCGTAGAGGAAAGAATTGCTGATGATGATGTCGTTATGATAAAGGGTTCTAAAACTACTTGTGCGGTCAGTGACTTTGTCCTAGCTCAAGCTGTTGTTAAGCTAATTTCCAGACCTAATTGTTTTAAATACTAATTCTTAGAGTAGATGGTGTTGAACTGTTGGGTATTAGTTCTGATATTGATACATTATTCACATTGTTACCTGTGGTTTAAATATCTAACTCACAAAAGGTTTTGAAAACAGATAAGATTTTGTATGATTGCTGAACTATGGGAAATTATATATTTGGTTGTGGAATACTATTGTTTCTTCATCATAAAAGAAATAAAAAAAATCTGTAGGTCAAGTTTTTTCAATTAAAAAAATTTCTTTTTCTTAAAAGAATGACATGGGGATAATCTAATTTTTTAAAAGTTTTATTCTCTAGGTCTCCTTGATCCTTAGAGGCGCAAATGACTACATGCTCGATGAGATGGAGAGGGCTTTGCATGATGCATTATGTATTGTCAAGAGGACTCTTGAGTCCAATACGGTAATACGTTTTGTGCTGTTCTTGTTTCAATTTCTACCAACCAGTAGCAGACGATACCACATGATTATTGGAGCACTTAAACTAAACATAGATAATTGGGTGATAGATTGGCAACAAGAATCAGAAACTTATATTTGTTCATGAGTCAGTTTCCCAGTTACCTATTCGTCGTTAAATGTGATCATAGTCATACAGGTAGTAGCAGGTGGTGGTGCAGTTGAATCTGCATTGTCGGTGTATTTGGAATACCTTGCAACAACTCTAGGCTCCCGTGAGCAGTTGGCAATTGCTGAATTTGCTGAATCTTTGTTAATTATTCCAAAGGTATAGTGATAATGGTGCAAAATTTGGAAATGTTTTGGGACGTCATCAATGTCACTTGCATGTTCTTTGTGTAGGTACTTGCTGTTAATGCTGCTAAGGATGCTACTGAGTTAGTTGCCAAACTACGGGCTTACCACCACACAGCACAAACGAAGGCAGAGAAGAAGCATCTCTCCAGGTCCTATAATTATTGCATTACTGTACTGTATTTTCCTGCTAAATTTTCCTTCTTTGGAAGCAATCCTTTTTAGCTTGCACCTTGAATATGCATCATATTGTTTTTATTCATTATTGATAAAGGCCTAAGAAGCATGGATACAAATATGATATGTTGCAGTTGCTGTGAGTCTGACACATCAGTTTCTGAAAATGTAGGTCACAGACTAGTTAG

mRNA sequence

ATGGAGGGGGAGGAAACCTTCGAGCCATCACATCTTGGATATGCTGATGAGGTCGTAGAGGAAAGAATTGCTGATGATGATGTCGTTATGATAAAGGGTTCTAAAACTACTTGTGCGGTCTCCTTGATCCTTAGAGGCGCAAATGACTACATGCTCGATGAGATGGAGAGGGCTTTGCATGATGCATTATGTATTGTCAAGAGGACTCTTGAGTCCAATACGGTAGTAGCAGGTGGTGGTGCAGTTGAATCTGCATTGTCGGTGTATTTGGAATACCTTGCAACAACTCTAGGCTCCCGTGAGCAGTTGGCAATTGCTGAATTTGCTGAATCTTTGTTAATTATTCCAAAGGTACTTGCTGTTAATGCTGCTAAGGATGCTACTGAGTTAGTTGCCAAACTACGGGCTTACCACCACACAGCACAAACGAAGGCAGAGAAGAAGCATCTCTCCAGGTCACAGACTAGTTAG

Coding sequence (CDS)

ATGGAGGGGGAGGAAACCTTCGAGCCATCACATCTTGGATATGCTGATGAGGTCGTAGAGGAAAGAATTGCTGATGATGATGTCGTTATGATAAAGGGTTCTAAAACTACTTGTGCGGTCTCCTTGATCCTTAGAGGCGCAAATGACTACATGCTCGATGAGATGGAGAGGGCTTTGCATGATGCATTATGTATTGTCAAGAGGACTCTTGAGTCCAATACGGTAGTAGCAGGTGGTGGTGCAGTTGAATCTGCATTGTCGGTGTATTTGGAATACCTTGCAACAACTCTAGGCTCCCGTGAGCAGTTGGCAATTGCTGAATTTGCTGAATCTTTGTTAATTATTCCAAAGGTACTTGCTGTTAATGCTGCTAAGGATGCTACTGAGTTAGTTGCCAAACTACGGGCTTACCACCACACAGCACAAACGAAGGCAGAGAAGAAGCATCTCTCCAGGTCACAGACTAGTTAG

Protein sequence

MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALHDALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHTAQTKAEKKHLSRSQTS

Homology

[Close]

BLAST of Cla004159 vs. Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-71
Identity = 138/151 (91.39%), Postives = 146/151 (96.69%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEGEETF+P+HLG ADEVVEERIADDDV++IKG+KT+ AVSLILRGANDYMLDEMERALH
Sbjct: 337 MEGEETFDPAHLGSADEVVEERIADDDVILIKGTKTSSAVSLILRGANDYMLDEMERALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALCIVKRTLESNTVVAGGGAVESALSVYLE+LATTLGSREQLAIAEFA++LLIIPKVLA
Sbjct: 397 DALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADALLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTKA+KKH S
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKADKKHYS 487

[Close]

BLAST of Cla004159 vs. Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-52
Identity = 101/150 (67.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           +EGEETFE + LG A+EVV+ERI DD++++IK +K   + S+ILRGAND+M DEMER+LH
Sbjct: 334 LEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLH 393

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALC+VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLAIAEFA SLL+IP  LA
Sbjct: 394 DALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLA 453

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHL 151
           VNAA+D+T+LVAKLRA+H+ AQ   E+K+L
Sbjct: 454 VNAAQDSTDLVAKLRAFHNEAQVNPERKNL 483

[Close]

BLAST of Cla004159 vs. Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-52
Identity = 101/150 (67.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           +EGEE+FE S LG A+EVV+ER+ DD++++IK +K   + S+ILRGAND+M DEMER++H
Sbjct: 337 LEGEESFEASMLGQAEEVVQERVCDDELILIKNTKARTSASIILRGANDFMCDEMERSIH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALC+VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLAIAEFA SLLIIP  LA
Sbjct: 397 DALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHL 151
           VNAA+DAT+LVAKLRA+H+ AQ   E+K+L
Sbjct: 457 VNAAQDATDLVAKLRAFHNEAQVNPERKNL 486

[Close]

BLAST of Cla004159 vs. Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-52
Identity = 102/150 (68.00%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           +EGEE+FE S LG A+EVV+ERI DD++++IK +K   + S+ILRGAND+M DEMER+LH
Sbjct: 334 LEGEESFEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLH 393

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALC+VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLAIAEFA SLLIIP  LA
Sbjct: 394 DALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLA 453

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHL 151
           VNAA+D+T+LVAKLRA+H+ AQ   E+K+L
Sbjct: 454 VNAAQDSTDLVAKLRAFHNEAQVNPERKNL 483

[Close]

BLAST of Cla004159 vs. Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-52
Identity = 101/150 (67.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           +EGEETFE + LG A+EVV+ERI DD++++IK +K   + S+ILRGAND+M DEMER+LH
Sbjct: 334 LEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLH 393

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALC+VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLAIAEFA SLL+IP  LA
Sbjct: 394 DALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLA 453

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHL 151
           VNAA+D+T+LVAKLRA+H+ AQ   E+K+L
Sbjct: 454 VNAAQDSTDLVAKLRAFHNEAQVNPERKNL 483

[Close]

BLAST of Cla004159 vs. TrEMBL
Match: A0A0A0LN13_CUCSA (T-complex protein 1 subunit alpha OS=Cucumis sativus GN=Csa_2G099450 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.0e-72
Identity = 147/151 (97.35%), Postives = 148/151 (98.01%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEGEETFEPS LGYADEVVEERIADDDVVMIKGSKTT AVSLILRGANDYMLDEMERALH
Sbjct: 337 MEGEETFEPSLLGYADEVVEERIADDDVVMIKGSKTTSAVSLILRGANDYMLDEMERALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DAL IVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA
Sbjct: 397 DALSIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTKA+KKHLS
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKADKKHLS 487

[Close]

BLAST of Cla004159 vs. TrEMBL
Match: B9SF60_RICCO (Chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative OS=Ricinus communis GN=RCOM_1276510 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.3e-71
Identity = 142/151 (94.04%), Postives = 149/151 (98.68%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEG+ETF+PS LGYADEVVEERIADDDV+MIKG+K+T AVSLILRGANDYMLDEM+RALH
Sbjct: 337 MEGDETFDPSLLGYADEVVEERIADDDVIMIKGTKSTSAVSLILRGANDYMLDEMDRALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA
Sbjct: 397 DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTKA+KKHLS
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKADKKHLS 487

[Close]

BLAST of Cla004159 vs. TrEMBL
Match: B9MUZ2_POPTR (T-complex polypeptide 1 family protein OS=Populus trichocarpa GN=POPTR_0014s05750g PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 8.0e-70
Identity = 141/151 (93.38%), Postives = 146/151 (96.69%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEGEETFEPS LGYADEVVEERIADDDV++IKG+K T AVSL+LRGANDYMLDEMERALH
Sbjct: 337 MEGEETFEPSFLGYADEVVEERIADDDVILIKGTKNTSAVSLVLRGANDYMLDEMERALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DAL IVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA
Sbjct: 397 DALSIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTKA+KK LS
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKADKKQLS 487

[Close]

BLAST of Cla004159 vs. TrEMBL
Match: V4LZC1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10020463mg PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.0e-69
Identity = 139/151 (92.05%), Postives = 148/151 (98.01%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEGEETF+P+HLG ADEVVEERIADDDVV+IKG+KT+ AVSLILRGANDYMLDEMERALH
Sbjct: 337 MEGEETFDPAHLGSADEVVEERIADDDVVLIKGTKTSSAVSLILRGANDYMLDEMERALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALCIVKRTLESNTVVAGGGAVESALSVYLE+LATTLGSREQLAIAEFA++LLIIPKVLA
Sbjct: 397 DALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADALLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTKA+KKH S
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKADKKHYS 487

[Close]

BLAST of Cla004159 vs. TrEMBL
Match: A0A124SDN2_CYNCS (Chaperone, tailless complex polypeptide 1 OS=Cynara cardunculus var. scolymus GN=Ccrd_000417 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.0e-69
Identity = 139/151 (92.05%), Postives = 147/151 (97.35%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEGEETF+ S LGYADEVVEERIADDDV+MIKG+KT+ AVSLILRGANDYMLDEM+RALH
Sbjct: 341 MEGEETFDSSFLGYADEVVEERIADDDVIMIKGTKTSSAVSLILRGANDYMLDEMDRALH 400

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALCIVKRTLESNTVVAGGGA E+ALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA
Sbjct: 401 DALCIVKRTLESNTVVAGGGAAEAALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 460

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDAT+LVAKLRAYHHTAQTKA+KKHLS
Sbjct: 461 VNAAKDATDLVAKLRAYHHTAQTKADKKHLS 491

[Close]

BLAST of Cla004159 vs. NCBI nr
Match: gi|778668112|ref|XP_011649041.1| (PREDICTED: T-complex protein 1 subunit alpha [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 7.2e-72
Identity = 147/151 (97.35%), Postives = 148/151 (98.01%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEGEETFEPS LGYADEVVEERIADDDVVMIKGSKTT AVSLILRGANDYMLDEMERALH
Sbjct: 337 MEGEETFEPSLLGYADEVVEERIADDDVVMIKGSKTTSAVSLILRGANDYMLDEMERALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DAL IVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA
Sbjct: 397 DALSIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTKA+KKHLS
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKADKKHLS 487

[Close]

BLAST of Cla004159 vs. NCBI nr
Match: gi|659082221|ref|XP_008441727.1| (PREDICTED: T-complex protein 1 subunit alpha [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 9.4e-72
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEGEETFEPS LGYADEVVEERIADDDVVMIKGSKTT A+SLILRGANDYMLDEMERALH
Sbjct: 337 MEGEETFEPSLLGYADEVVEERIADDDVVMIKGSKTTSAISLILRGANDYMLDEMERALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DAL IVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA
Sbjct: 397 DALSIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTKA+KKHLS
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKADKKHLS 487

[Close]

BLAST of Cla004159 vs. NCBI nr
Match: gi|729354624|ref|XP_010544606.1| (PREDICTED: T-complex protein 1 subunit alpha [Tarenaya hassleriana])

HSP 1 Score: 276.2 bits (705), Expect = 3.6e-71
Identity = 141/151 (93.38%), Postives = 149/151 (98.68%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEGEETF+PSHLGYA+EVVEERIADDDV++IKG+KTT AVSLILRGANDYMLDEMERALH
Sbjct: 337 MEGEETFDPSHLGYAEEVVEERIADDDVILIKGTKTTSAVSLILRGANDYMLDEMERALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALCIVKRTLESNTVVAGGGAVESALSVYLE+LATTLGSREQLAIAEFA+SLLIIPKVLA
Sbjct: 397 DALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADSLLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTKA+KKH S
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKADKKHYS 487

[Close]

BLAST of Cla004159 vs. NCBI nr
Match: gi|255567297|ref|XP_002524629.1| (PREDICTED: T-complex protein 1 subunit alpha [Ricinus communis])

HSP 1 Score: 275.8 bits (704), Expect = 4.7e-71
Identity = 142/151 (94.04%), Postives = 149/151 (98.68%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEG+ETF+PS LGYADEVVEERIADDDV+MIKG+K+T AVSLILRGANDYMLDEM+RALH
Sbjct: 337 MEGDETFDPSLLGYADEVVEERIADDDVIMIKGTKSTSAVSLILRGANDYMLDEMDRALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA
Sbjct: 397 DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTKA+KKHLS
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKADKKHLS 487

[Close]

BLAST of Cla004159 vs. NCBI nr
Match: gi|729455485|ref|XP_010524409.1| (PREDICTED: T-complex protein 1 subunit alpha-like [Tarenaya hassleriana])

HSP 1 Score: 273.9 bits (699), Expect = 1.8e-70
Identity = 139/151 (92.05%), Postives = 149/151 (98.68%), Query Frame = 1


Query: 1   MEGEETFEPSHLGYADEVVEERIADDDVVMIKGSKTTCAVSLILRGANDYMLDEMERALH 60
           MEGEETF+PSHLGYA+EVVEE+IADDDV++IKG+KTT AVSLILRGANDYMLDEMERALH
Sbjct: 337 MEGEETFDPSHLGYAEEVVEEKIADDDVILIKGTKTTSAVSLILRGANDYMLDEMERALH 396

Query: 61  DALCIVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLA 120
           DALCIVKRTLESNTVVAGGGAVESALSVYLE+LATTLGSREQLAIAEFA+SLLIIPKVLA
Sbjct: 397 DALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADSLLIIPKVLA 456

Query: 121 VNAAKDATELVAKLRAYHHTAQTKAEKKHLS 152
           VNAAKDATELVAKLRAYHHTAQTK++KKH S
Sbjct: 457 VNAAKDATELVAKLRAYHHTAQTKSDKKHYS 487

The following BLAST results are available for this feature:

BLAST of Cla004159 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCPA_ARATH	1.2e-71	91.39	T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=1 SV=1	[more]
TCPA_CRIGR	2.2e-52	67.33	T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1	[more]
TCPA_PALPA	2.2e-52	67.33	T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1	[more]
TCPA_MONDO	2.2e-52	68.00	T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1	[more]
TCPA_RAT	2.2e-52	67.33	T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1	[more]

BLAST of Cla004159 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN13_CUCSA	5.0e-72	97.35	T-complex protein 1 subunit alpha OS=Cucumis sativus GN=Csa_2G099450 PE=3 SV=1	[more]
B9SF60_RICCO	3.3e-71	94.04	Chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative OS=Rici...	[more]
B9MUZ2_POPTR	8.0e-70	93.38	T-complex polypeptide 1 family protein OS=Populus trichocarpa GN=POPTR_0014s0575...	[more]
V4LZC1_EUTSA	1.0e-69	92.05	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10020463mg PE=3 SV=1	[more]
A0A124SDN2_CYNCS	1.0e-69	92.05	Chaperone, tailless complex polypeptide 1 OS=Cynara cardunculus var. scolymus GN...	[more]

BLAST of Cla004159 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778668112\|ref\|XP_011649041.1\|	7.2e-72	97.35	PREDICTED: T-complex protein 1 subunit alpha [Cucumis sativus]	[more]
gi\|659082221\|ref\|XP_008441727.1\|	9.4e-72	96.69	PREDICTED: T-complex protein 1 subunit alpha [Cucumis melo]	[more]
gi\|729354624\|ref\|XP_010544606.1\|	3.6e-71	93.38	PREDICTED: T-complex protein 1 subunit alpha [Tarenaya hassleriana]	[more]
gi\|255567297\|ref\|XP_002524629.1\|	4.7e-71	94.04	PREDICTED: T-complex protein 1 subunit alpha [Ricinus communis]	[more]
gi\|729455485\|ref\|XP_010524409.1\|	1.8e-70	92.05	PREDICTED: T-complex protein 1 subunit alpha-like [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002423	Cpn60/TCP-1
IPR017998	Chaperone_TCP-1
IPR027409	GroEL-like_apical_dom_sf
IPR027413	GROEL-like_equatorial_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0006457	protein folding
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0001510	RNA methylation
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05565	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004159	Cla004159.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05565	WMU05565	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002423	Chaperonin Cpn60/TCP-1 family	PFAM	PF00118	Cpn60_TCP1	coord: 5..145 score: 8.2
IPR017998	Chaperone tailless complex polypeptide 1 (TCP-1)	PRINTS	PR00304	TCOMPLEXTCP1	coord: 41..63 score: 8.9E-7coord: 75..87 score: 8.
IPR027409	GroEL-like apical domain	GENE3D	G3DSA:3.50.7.10		coord: 6..46 score: 4.
IPR027413	GroEL-like equatorial domain	GENE3D	G3DSA:1.10.560.10		coord: 53..143 score: 5.7
None	No IPR available	PANTHER	PTHR11353	CHAPERONIN	coord: 5..139 score: 3.5
None	No IPR available	unknown	SSF48592	GroEL equatorial domain-like	coord: 30..143 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004159	CmaCh01G004850	Cucurbita maxima (Rimu)	cmawmB464

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004159	Wax gourd	wgowmB143
Cla004159	Wax gourd	wgowmB151
Cla004159	Cucumber (Gy14) v1	cgywmB368
Cla004159	Cucumber (Gy14) v1	cgywmB369
Cla004159	Cucurbita maxima (Rimu)	cmawmB461
Cla004159	Cucurbita maxima (Rimu)	cmawmB771
Cla004159	Cucurbita moschata (Rifu)	cmowmB455
Cla004159	Cucurbita moschata (Rifu)	cmowmB458
Cla004159	Cucurbita moschata (Rifu)	cmowmB762
Cla004159	Cucurbita moschata (Rifu)	cmowmB765
Cla004159	Wild cucumber (PI 183967)	cpiwmB160
Cla004159	Wild cucumber (PI 183967)	cpiwmB168
Cla004159	Melon (DHL92) v3.5.1	mewmB424
Cla004159	Melon (DHL92) v3.5.1	mewmB427
Cla004159	Watermelon (Charleston Gray)	wcgwmB106
Cla004159	Cucumber (Chinese Long) v2	cuwmB158
Cla004159	Cucumber (Chinese Long) v2	cuwmB166
Cla004159	Cucurbita pepo (Zucchini)	cpewmB120
Cla004159	Cucurbita pepo (Zucchini)	cpewmB582
Cla004159	Bottle gourd (USVL1VR-Ls)	lsiwmB113
Cla004159	Bottle gourd (USVL1VR-Ls)	lsiwmB119
Cla004159	Cucumber (Gy14) v2	cgybwmB150
Cla004159	Cucumber (Gy14) v2	cgybwmB158
Cla004159	Melon (DHL92) v3.6.1	medwmB412
Cla004159	Silver-seed gourd	carwmB0699
Cla004159	Cucumber (Chinese Long) v3	cucwmB169
Cla004159	Cucumber (Chinese Long) v3	cucwmB177
Cla004159	Watermelon (97103) v2	wmwmbB359