WMU39953 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU39953
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cation/H(+) antiporter 18
Location	Chr7 : 14939630 .. 14940166 (-)
Sequence length	542

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCATAAAAGTGCTGCAGAAGCAATGGATACAGTACAGGAGCTGAAAAACTGCAATCTGTATCTTGTTGGTCGAACACCGGATGTCAATTCAACCTTTGTCTTAAACAGAAGTGACTGTCCGGAGCTTGGTCCAGTTGGGAACCTGTTGACTTCACCGAACTTCACGATTTCAGCGTCGGTTTTGGTGGTGCAGCAATATCGTTCTGAAGTTACTGGTGAATTCGGTTTCAGATTCTGCTGATGGAGAATCAGAATCATCATAAGTAGTGTGTTGGTTTCACATTCTTTTAGTTGCACATAGGAGAGCAGCATCTTTGTGAATCATAGGGTTAGATTTCCTGTTTTCTTTTTTGTTCAAGTATCAAATATGACTGGTGTTACTTAAAGCTCCAAATAACATTATCCTACATAGTCTAATCGGTCCTCTTCTAAAGGGGCTCTCTGACCTAAAACTAAGATAACAAGGATTTTTAAGTCATCATATTTTCAATTTGGGCTACAACTTATGGAGTGTATTGTCAAAAATAAAGGATGCTTTCATT

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	2

Homology

[Close]

BLAST of WMU39953 vs. TAIR10
Match: AT5G41610.1 (AT5G41610.1 cation/H+ exchanger 18)

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-10
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 2


Query: 8   SAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLN-RSDCPELGPVGNLLTSPNFTISASVL 67
           +A +    ++E++  NL+LVGR P       +   S+CPELGPVG+LL SP  +  ASVL
Sbjct: 721 AAVDVRSAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVL 780

Query: 68  VVQQY 127
           V+QQY
Sbjct: 781 VIQQY 785

Query: 128  187
           
Sbjct: 841  785

Query: 188  200
           
Sbjct: 901  785

[Close]

BLAST of WMU39953 vs. TAIR10
Match: AT3G17630.1 (AT3G17630.1 cation/H+ exchanger 19)

HSP 1 Score: 61.6 bits (148), Expect = 5.7e-10
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLNRSDCPELGPVGNLLTSPNFTISASVL 64
           +S  + + T++ +  CNL++VGR   V S  ++  +DCPELGPVG LL+S  F+ +ASVL
Sbjct: 710 ESKDDIIATLKSMSKCNLFVVGRNAAVAS--LVKSTDCPELGPVGRLLSSSEFSTTASVL 769

Query: 65  VVQQY 124
           VVQ Y
Sbjct: 770 VVQGY 772

Query: 125  184
           
Sbjct: 830  772

Query: 185  200
           
Sbjct: 890  772

[Close]

BLAST of WMU39953 vs. TAIR10
Match: AT4G23700.1 (AT4G23700.1 cation/H+ exchanger 17)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLN-RSDCPELGPVGNLLT-SPNFTISAS 64
           K   E ++ ++E    NL+LVG++P+ +    +N RSD PELGP+GNLLT S + +  AS
Sbjct: 729 KCYEEVIEVIKEYSKSNLFLVGKSPEGSVASGINVRSDTPELGPIGNLLTESESVSTVAS 788

Query: 65  VLVVQQY 124
           VLVVQQY
Sbjct: 789 VLVVQQY 795

Query: 125  184
           
Sbjct: 849  795

Query: 185  200
           
Sbjct: 909  795

[Close]

BLAST of WMU39953 vs. TAIR10
Match: AT1G64170.1 (AT1G64170.1 cation/H+ exchanger 16)

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-08
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 2


Query: 8   SAAEAMDTVQELKNCNLYLVGRTPD--VNSTFVLNRSDCPELGPVGNLLTSPNFTISASV 67
           S  E ++ +++   C++ LVG++    + S   + + +CPELGPVGNL+ S   + S SV
Sbjct: 727 STEEVVEIIRQFYECDILLVGKSSKGPMVSRLPVMKIECPELGPVGNLIVSNEISTSVSV 786

Query: 68  LVVQQY 127
           LVVQQY
Sbjct: 787 LVVQQY 792

Query: 128  187
           
Sbjct: 847  792

Query: 188  200
           
Sbjct: 907  792

[Close]

BLAST of WMU39953 vs. TAIR10
Match: AT2G31910.1 (AT2G31910.1 cation/H+ exchanger 21)

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06
Identity = 31/73 (42.47%), Postives = 41/73 (56.16%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCN---LYLVGRTPDVNSTFVLNRSD---CPELGPVGNLLTSPNFT 64
           K+  E +  + EL++ N   LY+VGR   V +      +D    P+LG +G+ L S NFT
Sbjct: 717 KNGQETITAILELEDNNSYDLYIVGRGYQVETPVTSGLTDWNSTPDLGIIGDTLISSNFT 776

Query: 65  ISASVLVVQQYRS 124
           + ASVLVVQQY S
Sbjct: 777 MQASVLVVQQYSS 789

Query: 125  184
           
Sbjct: 837  789

Query: 185  206
           
Sbjct: 897  789

[Close]

BLAST of WMU39953 vs. Swiss-Prot
Match: CHX18_ARATH (Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.5e-09
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 2


Query: 8   SAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLN-RSDCPELGPVGNLLTSPNFTISASVL 67
           +A +    ++E++  NL+LVGR P       +   S+CPELGPVG+LL SP  +  ASVL
Sbjct: 721 AAVDVRSAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVL 780

Query: 68  VVQQY 127
           V+QQY
Sbjct: 781 VIQQY 785

Query: 128  187
           
Sbjct: 841  785

Query: 188  200
           
Sbjct: 901  785

[Close]

BLAST of WMU39953 vs. Swiss-Prot
Match: CHX19_ARATH (Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-08
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLNRSDCPELGPVGNLLTSPNFTISASVL 64
           +S  + + T++ +  CNL++VGR   V S  ++  +DCPELGPVG LL+S  F+ +ASVL
Sbjct: 710 ESKDDIIATLKSMSKCNLFVVGRNAAVAS--LVKSTDCPELGPVGRLLSSSEFSTTASVL 769

Query: 65  VVQQY 124
           VVQ Y
Sbjct: 770 VVQGY 772

Query: 125  184
           
Sbjct: 830  772

Query: 185  200
           
Sbjct: 890  772

[Close]

BLAST of WMU39953 vs. Swiss-Prot
Match: CHX17_ARATH (Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-08
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLN-RSDCPELGPVGNLLT-SPNFTISAS 64
           K   E ++ ++E    NL+LVG++P+ +    +N RSD PELGP+GNLLT S + +  AS
Sbjct: 729 KCYEEVIEVIKEYSKSNLFLVGKSPEGSVASGINVRSDTPELGPIGNLLTESESVSTVAS 788

Query: 65  VLVVQQY 124
           VLVVQQY
Sbjct: 789 VLVVQQY 795

Query: 125  184
           
Sbjct: 849  795

Query: 185  200
           
Sbjct: 909  795

[Close]

BLAST of WMU39953 vs. Swiss-Prot
Match: CHX16_ARATH (Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 2


Query: 8   SAAEAMDTVQELKNCNLYLVGRTPD--VNSTFVLNRSDCPELGPVGNLLTSPNFTISASV 67
           S  E ++ +++   C++ LVG++    + S   + + +CPELGPVGNL+ S   + S SV
Sbjct: 727 STEEVVEIIRQFYECDILLVGKSSKGPMVSRLPVMKIECPELGPVGNLIVSNEISTSVSV 786

Query: 68  LVVQQY 127
           LVVQQY
Sbjct: 787 LVVQQY 792

Query: 128  187
           
Sbjct: 847  792

Query: 188  200
           
Sbjct: 907  792

[Close]

BLAST of WMU39953 vs. NCBI nr
Match: gi|449457680|ref|XP_004146576.1| (PREDICTED: cation/H(+) antiporter 18-like [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLNRSDCPELGPVGNLLTSPNFTISASVL 64
           K+AAEAM TVQELK+CNLYLVGRTP +NS+F LNR+DCPELGPVGNLLTS NF I+ASVL
Sbjct: 715 KTAAEAMSTVQELKHCNLYLVGRTPGLNSSFALNRNDCPELGPVGNLLTSLNFPITASVL 774

Query: 65  VVQQYRSEV 124
           VVQQYRS++
Sbjct: 775 VVQQYRSQL 783

Query: 125  184
           
Sbjct: 835  783

Query: 185  212
           
Sbjct: 895  783

[Close]

BLAST of WMU39953 vs. NCBI nr
Match: gi|659102162|ref|XP_008451983.1| (PREDICTED: LOW QUALITY PROTEIN: cation/H(+) antiporter 18-like [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLNRSDCPELGPVGNLLTSPNFTISASVL 64
           K+AAE M  VQELK+CNLYLVGRTP +NS+F LNR+DCPELGP+GNLLTSPNF I+ASVL
Sbjct: 715 KTAAEVMGIVQELKHCNLYLVGRTPGLNSSFALNRNDCPELGPIGNLLTSPNFPITASVL 774

Query: 65  VVQQYRSEV 124
           VVQQYRS++
Sbjct: 775 VVQQYRSQL 783

Query: 125  184
           
Sbjct: 835  783

Query: 185  212
           
Sbjct: 895  783

[Close]

BLAST of WMU39953 vs. NCBI nr
Match: gi|645267268|ref|XP_008238994.1| (PREDICTED: cation/H(+) antiporter 18-like [Prunus mume])

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLN-----RSDCPELGPVGNLLTSPNFTI 64
           ++AAE  D ++E   CNL+LVGR P+      LN     +SDCPELGPVG+LLTSP+FT 
Sbjct: 713 RNAAETTDLIREFNRCNLFLVGRRPEGQVAAALNVNLKVKSDCPELGPVGSLLTSPDFTT 772

Query: 65  SASVLVVQQY 124
           +ASVLVVQQY
Sbjct: 773 AASVLVVQQY 782

Query: 125  184
           
Sbjct: 833  782

Query: 185  200
           
Sbjct: 893  782

[Close]

BLAST of WMU39953 vs. NCBI nr
Match: gi|698541123|ref|XP_009765985.1| (PREDICTED: cation/H(+) antiporter 18-like [Nicotiana sylvestris])

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLN-RSDCPELGPVGNLLTSPNFTISASV 64
           K A   ++ + E   CNL+LVGR P+      L+ RSDCPELG VGNLLTSP F+ +ASV
Sbjct: 712 KDARGTIEVISEYNRCNLFLVGRMPEGQLVLALDKRSDCPELGSVGNLLTSPEFSTTASV 771

Query: 65  LVVQQYRSEVTGE 124
           LVVQQYRS++  E
Sbjct: 772 LVVQQYRSQLPRE 784

Query: 125  184
           
Sbjct: 832  784

Query: 185  221
           
Sbjct: 892  784

[Close]

BLAST of WMU39953 vs. NCBI nr
Match: gi|658012040|ref|XP_008341283.1| (PREDICTED: cation/H(+) antiporter 18-like [Malus domestica])

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 2


Query: 5   KSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLN-RSDCPELGPVGNLLTSPNFTISASV 64
           ++AAE  D ++E   CNL+LVGR P+      LN + DCPELGPVG+LLTSP+FT +ASV
Sbjct: 714 RNAAETTDLIREFNRCNLFLVGRRPEGQVAAALNIKGDCPELGPVGSLLTSPDFTTTASV 773

Query: 65  LVVQQY 124
           LVVQQY
Sbjct: 774 LVVQQY 779

Query: 125  184
           
Sbjct: 834  779

Query: 185  200
           
Sbjct: 894  779

The following BLAST results are available for this feature:

BLAST of WMU39953 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41610.1	2.5e-10	46.15	cation/H+ exchanger 18	[more]
AT3G17630.1	5.7e-10	47.69	cation/H+ exchanger 19	[more]
AT4G23700.1	2.1e-09	49.25	cation/H+ exchanger 17	[more]
AT1G64170.1	6.9e-08	40.91	cation/H+ exchanger 16	[more]
AT2G31910.1	1.7e-06	42.47	cation/H+ exchanger 21	[more]

BLAST of WMU39953 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CHX18_ARATH	4.5e-09	46.15	Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1	[more]
CHX19_ARATH	1.0e-08	47.69	Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1	[more]
CHX17_ARATH	3.8e-08	49.25	Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1	[more]
CHX16_ARATH	1.2e-06	40.91	Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1	[more]

BLAST of WMU39953 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457680\|ref\|XP_004146576.1\|	1.1e-23	81.16	PREDICTED: cation/H(+) antiporter 18-like [Cucumis sativus]	[more]
gi\|659102162\|ref\|XP_008451983.1\|	1.9e-23	78.26	PREDICTED: LOW QUALITY PROTEIN: cation/H(+) antiporter 18-like [Cucumis melo]	[more]
gi\|645267268\|ref\|XP_008238994.1\|	2.3e-13	58.57	PREDICTED: cation/H(+) antiporter 18-like [Prunus mume]	[more]
gi\|698541123\|ref\|XP_009765985.1\|	2.3e-13	56.16	PREDICTED: cation/H(+) antiporter 18-like [Nicotiana sylvestris]	[more]
gi\|658012040\|ref\|XP_008341283.1\|	2.3e-13	60.61	PREDICTED: cation/H(+) antiporter 18-like [Malus domestica]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla001746	Cla001746	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0048944	S1_0048944	EST
S2_0035160	S2_0035160	EST
S2_0176890	S2_0176890	EST