WMU17405 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU17405
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	F-box protein
Location	Chr7 : 14166533 .. 14169884 (+)
Sequence length	1148

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTCTCTATCTCTCTCGTCGGACTTTTGGGAGCGTGGTCTCTCTCCTTGTTCTGATCTCCATCAAATCGGAGATTCTATCGATTCTGCCATATTGTGAGGTGCCAAATTTTCGATGTTGTTGGATCGCATTGTCTCTTCCCTCCACATCCTCAGATTCGGAGTCCTCTTCTCGGACGTATGATCATCTAGGGATCAAATCCTCACTCCCTTGTTATACTTCTATTTGCAAGATGACATGGGAAGAAGTTTTGAAGGTGATTTTCCCTTTGCTGGAAGGTGTGGACCTTGCTTCCTGCATGGCAGTGTGCAAGCAGTGGAGAGACATTGCGCGAGATGATTACTTCTGGAAATGCTTGTGTGCCAAGAGATGGCCTTCAACCTGCAAAACGCCCAATCCTCCAACAGATACCTACTACAAACTATATCGAAATTTTTACAAACGCCCCAATAATCGGTGTCTTCTCCCTCCTCGACTTTCCTTTGATGATTTAGAGTTTTTTATCGACATTTGGAGTGAAAACAGATTAATCTTCTCAGAAGTGGTTTCAGGTCAAGTCCTCCAGAATGGTATGAAGAAGCCACCACCTGGTACTAGTAATGTGCTTAGTTATCACCTCGAAGTCCCTGAGTTCAAAATGACACTCCCTGTTGAGCCAAGGTTTTCAATTCCTATATCCCATAGCGTGAGCGTATCTGTGCTTGTGAGACGAAAGGATTCCAATAAAGTTGCTCGGATAGTCAATAAATCTCTATTTGATTATATTGATAGAACGTCATACAGGGCATTGGCATTTGACTACCTTGATCTTTTCACCTCTCCACCCGTTTGTCTCGGGAATCCGAGCATGGATCTCATTGCTTTTCATGGACGATGGAAATGATGGTGTAATTGATGTATTTGGAATAGTAATGGATTTCTGTGATGCTGCAAACACAAAGGATGAGGTATTATGGCTTCTGGACTTGCTTGATTGGAAATGAAGGCCATGGTGGGGGTTGCGCCAAATATGAAAAACTTTCACATCTTGCTTGAAAATATTGTTCTGGCTTTTCTGGTATCATAACCTGTCCCTCACTTGTTCATTGTCATGTACATAAATTTCCAATTCATCTCATCAATAAATATTAAACAAGCTCTTTTTATTACG

Library


Library category	ESTs
Watermelon normalization and subtraction library	3
watermelon fruit 10d library	1
watermelon fruit 18d library	2
watermelon fruit 26d library	4
watermelon fruit 34d library	3

Homology

[Close]

BLAST of WMU17405 vs. TAIR10
Match: AT5G39250.1 (AT5G39250.1 F-box family protein)

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-71
Identity = 125/199 (62.81%), Postives = 149/199 (74.87%), Query Frame = 3


Query: 240 EEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDTYYK 299
           EEVLK +FPLLEG DLASCM VCKQWRDIARDD++WKC CAK+WPS CK   PPT+TYYK
Sbjct: 4   EEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYK 63

Query: 300 LYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPGTSN 359
           +Y+ F KR  NR L PPRLSF++LEFFIDIWSE RL+FS ++ G  L+NG++  P G SN
Sbjct: 64  MYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISN 123

Query: 360 VLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDRTSY 419
           VL  HL  P++KM +P EPRF+IP+           R DS+KVARI+N+S+FDYIDR+SY
Sbjct: 124 VLRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSY 183

Query: 420 RALAFDYLDLFTSPPVCLG 479
           RALAF+YLDL    P   G
Sbjct: 184 RALAFEYLDLSPCYPFISG 202

Query: 480  539
           
Sbjct: 244  202

Query: 540  599
           
Sbjct: 304  202

Query: 600  659
           
Sbjct: 364  202

Query: 660  719
           
Sbjct: 424  202

Query: 720  779
           
Sbjct: 484  202

Query: 780  837
           
Sbjct: 544  202

HSP 2 Score: 67.0 bits (162), Expect = 2.9e-11
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 802 LIFSPLHPFVSGIRAWISLLFM---DDGNDGVIDVFGIVMDFCDAANTKDEV 861
           L  SP +PF+SGIRAWISLLFM   D  +DG++DVFGI +DF D A+TK+EV
Sbjct: 191 LDLSPCYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEV 242

Query: 862  921
           
Sbjct: 251  242

Query: 922  949
           
Sbjct: 311  242

[Close]

BLAST of WMU17405 vs. Swiss-Prot
Match: FB270_ARATH (F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 2.6e-70
Identity = 125/199 (62.81%), Postives = 149/199 (74.87%), Query Frame = 3


Query: 240 EEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDTYYK 299
           EEVLK +FPLLEG DLASCM VCKQWRDIARDD++WKC CAK+WPS CK   PPT+TYYK
Sbjct: 4   EEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYK 63

Query: 300 LYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPGTSN 359
           +Y+ F KR  NR L PPRLSF++LEFFIDIWSE RL+FS ++ G  L+NG++  P G SN
Sbjct: 64  MYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISN 123

Query: 360 VLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDRTSY 419
           VL  HL  P++KM +P EPRF+IP+           R DS+KVARI+N+S+FDYIDR+SY
Sbjct: 124 VLRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSY 183

Query: 420 RALAFDYLDLFTSPPVCLG 479
           RALAF+YLDL    P   G
Sbjct: 184 RALAFEYLDLSPCYPFISG 202

Query: 480  539
           
Sbjct: 244  202

Query: 540  599
           
Sbjct: 304  202

Query: 600  659
           
Sbjct: 364  202

Query: 660  719
           
Sbjct: 424  202

Query: 720  779
           
Sbjct: 484  202

Query: 780  837
           
Sbjct: 544  202

HSP 2 Score: 67.0 bits (162), Expect = 5.1e-10
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 802 LIFSPLHPFVSGIRAWISLLFM---DDGNDGVIDVFGIVMDFCDAANTKDEV 861
           L  SP +PF+SGIRAWISLLFM   D  +DG++DVFGI +DF D A+TK+EV
Sbjct: 191 LDLSPCYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEV 242

Query: 862  921
           
Sbjct: 251  242

Query: 922  949
           
Sbjct: 311  242

[Close]

BLAST of WMU17405 vs. TrEMBL
Match: A0A0A0L6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.5e-93
Identity = 167/202 (82.67%), Postives = 175/202 (86.63%), Query Frame = 3


Query: 231 MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 290
           MTWEE+LKVIFPLLEGVDLASCMAVCKQWRDIA+DDYFWKCLCAK+WPSTCKT +PPTDT
Sbjct: 1   MTWEEILKVIFPLLEGVDLASCMAVCKQWRDIAQDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 291 YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 350
           YYKLYRNFYKRPNNR LLPPRLSFDDLEFFIDIWSE+RLIFSEVVSG + QNGMK PPP 
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVSGGIFQNGMKNPPPS 120

Query: 351 TSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDR 410
           T N+LSYHLEVPEFKMTL VEPRFSIPI           RKDSNKVARIVNKS+FDYIDR
Sbjct: 121 TGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 411 TSYRALAFDYLDLFTSPPVCLG 470
           TSYRALAFDYLD     P   G
Sbjct: 181 TSYRALAFDYLDFSPFHPFVSG 202

Query: 471  530
           
Sbjct: 241  202

Query: 531  590
           
Sbjct: 301  202

Query: 591  650
           
Sbjct: 361  202

Query: 651  710
           
Sbjct: 421  202

Query: 711  770
           
Sbjct: 481  202

Query: 771  830
           
Sbjct: 541  202

Query: 831  837
           
Sbjct: 601  202

[Close]

BLAST of WMU17405 vs. TrEMBL
Match: A0A0A0L6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.1e-17
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 1


Query: 802 LIFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEV 861
           L FSP HPFVSGIRAWISLLFMDDG+DG IDVFGIVMDFCDAANTKDEV
Sbjct: 191 LDFSPFHPFVSGIRAWISLLFMDDGDDGAIDVFGIVMDFCDAANTKDEV 239

Query: 862  921
           
Sbjct: 251  239

Query: 922  949
           
Sbjct: 311  239

HSP 2 Score: 305.1 bits (780), Expect = 1.2e-79
Identity = 142/202 (70.30%), Postives = 164/202 (81.19%), Query Frame = 3


Query: 231 MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 290
           M+ EEVLKV+FPLL+G+DLA+CM VCKQWRDIARDDYFW+C+CAKRWPS CK PNPPT T
Sbjct: 1   MSCEEVLKVVFPLLDGIDLAACMVVCKQWRDIARDDYFWRCVCAKRWPSICKRPNPPTVT 60

Query: 291 YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 350
           YYKLY+ FYKR + R LLPPRLSFDDLEFFIDIW+E++LIFSEVV G VLQ G+K PP G
Sbjct: 61  YYKLYQTFYKRQHKRTLLPPRLSFDDLEFFIDIWTEDKLIFSEVVPGPVLQTGIKIPPTG 120

Query: 351 TSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDR 410
             ++L +HLE PE+KMTLPVEPRF++P            RKDSNKVA I+NKSLFDYIDR
Sbjct: 121 ICDMLKFHLEGPEYKMTLPVEPRFTVPWSQTVSVSVLVERKDSNKVACIINKSLFDYIDR 180

Query: 411 TSYRALAFDYLDLFTSPPVCLG 470
           T+YRALAFDYLD   + P   G
Sbjct: 181 TAYRALAFDYLDFSPNYPFISG 202

Query: 471  530
           
Sbjct: 241  202

Query: 531  590
           
Sbjct: 301  202

Query: 591  650
           
Sbjct: 361  202

Query: 651  710
           
Sbjct: 421  202

Query: 711  770
           
Sbjct: 481  202

Query: 771  830
           
Sbjct: 541  202

Query: 831  837
           
Sbjct: 601  202

[Close]

BLAST of WMU17405 vs. TrEMBL
Match: A0A061EG72_THECC (F-box protein OS=Theobroma cacao GN=TCM_018725 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1


Query: 802 LIFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEV 861
           L FSP +PF+SGIRAWISLLFM+DGNDGVIDVFGI MDFCDAAN+K+E+
Sbjct: 191 LDFSPNYPFISGIRAWISLLFMEDGNDGVIDVFGIEMDFCDAANSKEEL 239

Query: 862  921
           
Sbjct: 251  239

Query: 922  949
           
Sbjct: 311  239

HSP 2 Score: 293.9 bits (751), Expect = 2.8e-76
Identity = 135/202 (66.83%), Postives = 160/202 (79.21%), Query Frame = 3


Query: 231 MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 290
           M+++EVLK +FPLL+GVDLASCM V KQWRD ARDDYFWKCLCAKRWPS CK PNPPT T
Sbjct: 1   MSYDEVLKAVFPLLDGVDLASCMVVSKQWRDTARDDYFWKCLCAKRWPSICKRPNPPTVT 60

Query: 291 YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 350
           Y KLY+ FYKR N + LLPPRLSFDDLEFFIDIWSE +LIFSEVV G VL  G+K PPPG
Sbjct: 61  YCKLYQTFYKRQNRQTLLPPRLSFDDLEFFIDIWSEEKLIFSEVVPGPVLLGGIKVPPPG 120

Query: 351 TSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDR 410
             ++L +HLE P++KMTLPVEPR  IP+           RKD+NKVAR++N+S+FDYIDR
Sbjct: 121 ICDILRFHLEGPDYKMTLPVEPRVKIPLSQTVSVSVLVGRKDTNKVARVINRSVFDYIDR 180

Query: 411 TSYRALAFDYLDLFTSPPVCLG 470
           T+YR++AF+YLD   + P   G
Sbjct: 181 TAYRSMAFEYLDFSPAHPFVPG 202

Query: 471  530
           
Sbjct: 241  202

Query: 531  590
           
Sbjct: 301  202

Query: 591  650
           
Sbjct: 361  202

Query: 651  710
           
Sbjct: 421  202

Query: 711  770
           
Sbjct: 481  202

Query: 771  830
           
Sbjct: 541  202

Query: 831  837
           
Sbjct: 601  202

[Close]

BLAST of WMU17405 vs. TrEMBL
Match: B9SJD7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525640 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.5e-13
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 802 LIFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEV 861
           L FSP HPFV GIRAWISLLFM+DGN+GVIDVFGI MDF DAAN+++EV
Sbjct: 191 LDFSPAHPFVPGIRAWISLLFMEDGNEGVIDVFGIEMDFRDAANSREEV 239

Query: 862  921
           
Sbjct: 251  239

Query: 922  949
           
Sbjct: 311  239

HSP 2 Score: 290.4 bits (742), Expect = 3.1e-75
Identity = 137/202 (67.82%), Postives = 157/202 (77.72%), Query Frame = 3


Query: 231 MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 290
           MT+EEVLK +FPLLEGVDLASCM V KQWR IARDD+FWKC CAKRWPS CK PNPPT T
Sbjct: 1   MTYEEVLKAVFPLLEGVDLASCMVVSKQWRHIARDDFFWKCACAKRWPSICKRPNPPTLT 60

Query: 291 YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 350
           YYKLY+ FYKR   R LLPPRLSFDDLEFFIDIW+E+R IFSEVV G +LQNG+K PPPG
Sbjct: 61  YYKLYQTFYKRRPGRILLPPRLSFDDLEFFIDIWTEDRFIFSEVVPGPILQNGIKIPPPG 120

Query: 351 TSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDR 410
             ++L  H+E  E+KM +PVEPRF++P+           RKDSNKVA I+NKS+FDYIDR
Sbjct: 121 VCDMLRLHMESSEYKMKVPVEPRFTVPLSQTVNVSVLVGRKDSNKVACILNKSMFDYIDR 180

Query: 411 TSYRALAFDYLDLFTSPPVCLG 470
           T+YRA+A DYLD     P   G
Sbjct: 181 TAYRAMANDYLDFSPVYPFTTG 202

Query: 471  530
           
Sbjct: 241  202

Query: 531  590
           
Sbjct: 301  202

Query: 591  650
           
Sbjct: 361  202

Query: 651  710
           
Sbjct: 421  202

Query: 711  770
           
Sbjct: 481  202

Query: 771  830
           
Sbjct: 541  202

Query: 831  837
           
Sbjct: 601  202

[Close]

BLAST of WMU17405 vs. TrEMBL
Match: M5X692_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010438mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 802 LIFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEV 861
           L FSP++PF +GIRAWISLLFMD GN+GV+DVFGI MDF DAAN+K+EV
Sbjct: 191 LDFSPVYPFTTGIRAWISLLFMDSGNEGVVDVFGIEMDFMDAANSKEEV 239

Query: 862  921
           
Sbjct: 251  239

Query: 922  949
           
Sbjct: 311  239

HSP 2 Score: 290.0 bits (741), Expect = 4.1e-75
Identity = 133/202 (65.84%), Postives = 161/202 (79.70%), Query Frame = 3


Query: 228 KMTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTD 287
           KM  EE+LK +FP LEG DL +CM VCKQWRDIARDDYFWKCLC+K+WPS CK P+PPT 
Sbjct: 5   KMACEEILKAVFPFLEGTDLVTCMGVCKQWRDIARDDYFWKCLCSKKWPSICKRPSPPTI 64

Query: 288 TYYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPP 347
           TYYKL++NF+KR   R +LPP LSF+DLEF+IDIW+E ++IFS+VV G VLQ G+  PPP
Sbjct: 65  TYYKLFQNFHKRQYRRTVLPPSLSFNDLEFYIDIWTEEKIIFSDVVPGPVLQKGIWIPPP 124

Query: 348 GTSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYID 407
           G  +VL +HLE PE+KMTLPVEPRF+IP+           RKD+NKVA I+ KSLFDYID
Sbjct: 125 GICDVLRFHLEGPEYKMTLPVEPRFTIPLCQTVSVSVLVGRKDTNKVACIIKKSLFDYID 184

Query: 408 RTSYRALAFDYLDLFTSPPVCL 467
           RT+YRALA+DYLDL  + P+CL
Sbjct: 185 RTAYRALAYDYLDL--ASPICL 204

Query: 468  527
           
Sbjct: 245  204

Query: 528  587
           
Sbjct: 305  204

Query: 588  647
           
Sbjct: 365  204

Query: 648  707
           
Sbjct: 425  204

Query: 708  767
           
Sbjct: 485  204

Query: 768  827
           
Sbjct: 545  204

Query: 828  834
           
Sbjct: 605  204

[Close]

BLAST of WMU17405 vs. NCBI nr
Match: gi|659095831|ref|XP_008448789.1| (PREDICTED: F-box protein At5g39250 [Cucumis melo])

HSP 1 Score: 365.9 bits (938), Expect = 8.4e-98
Identity = 173/202 (85.64%), Postives = 179/202 (88.61%), Query Frame = 3


Query: 231 MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 290
           MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAK+WPSTCKT +PPTDT
Sbjct: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 291 YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 350
           YYKLYRNFYKRPNNR LLPPRLSFDDLEFFIDIWSE+RLIFSE VSG++LQNGMK PPPG
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEAVSGRILQNGMKSPPPG 120

Query: 351 TSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDR 410
           TSNVLSYHLEVPEFKMTLPVEPRFSIPI           RKDSNKVARIVNKS+FDYIDR
Sbjct: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISNAVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 411 TSYRALAFDYLDLFTSPPVCLG 470
           TSYRALAFDYLD     P   G
Sbjct: 181 TSYRALAFDYLDFSPLHPFVSG 202

Query: 471  530
           
Sbjct: 241  202

Query: 531  590
           
Sbjct: 301  202

Query: 591  650
           
Sbjct: 361  202

Query: 651  710
           
Sbjct: 421  202

Query: 711  770
           
Sbjct: 481  202

Query: 771  830
           
Sbjct: 541  202

Query: 831  837
           
Sbjct: 601  202

[Close]

BLAST of WMU17405 vs. NCBI nr
Match: gi|449458996|ref|XP_004147232.1| (PREDICTED: F-box protein At5g39250 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 1.9e-94
Identity = 167/202 (82.67%), Postives = 175/202 (86.63%), Query Frame = 3


Query: 231 MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 290
           MTWEE+LKVIFPLLEGVDLASCMAVCKQWRDIA+DDYFWKCLCAK+WPSTCKT +PPTDT
Sbjct: 1   MTWEEILKVIFPLLEGVDLASCMAVCKQWRDIAQDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 291 YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 350
           YYKLYRNFYKRPNNR LLPPRLSFDDLEFFIDIWSE+RLIFSEVVSG + QNGMK PPP 
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVSGGIFQNGMKNPPPS 120

Query: 351 TSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDR 410
           T N+LSYHLEVPEFKMTL VEPRFSIPI           RKDSNKVARIVNKS+FDYIDR
Sbjct: 121 TGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 411 TSYRALAFDYLDLFTSPPVCLG 470
           TSYRALAFDYLD     P   G
Sbjct: 181 TSYRALAFDYLDFSPFHPFVSG 202

Query: 471  530
           
Sbjct: 241  202

Query: 531  590
           
Sbjct: 301  202

Query: 591  650
           
Sbjct: 361  202

Query: 651  710
           
Sbjct: 421  202

Query: 711  770
           
Sbjct: 481  202

Query: 771  830
           
Sbjct: 541  202

Query: 831  837
           
Sbjct: 601  202

[Close]

BLAST of WMU17405 vs. NCBI nr
Match: gi|590650724|ref|XP_007032712.1| (F-box protein [Theobroma cacao])

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 142/202 (70.30%), Postives = 164/202 (81.19%), Query Frame = 3


Query: 231 MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 290
           M+ EEVLKV+FPLL+G+DLA+CM VCKQWRDIARDDYFW+C+CAKRWPS CK PNPPT T
Sbjct: 1   MSCEEVLKVVFPLLDGIDLAACMVVCKQWRDIARDDYFWRCVCAKRWPSICKRPNPPTVT 60

Query: 291 YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 350
           YYKLY+ FYKR + R LLPPRLSFDDLEFFIDIW+E++LIFSEVV G VLQ G+K PP G
Sbjct: 61  YYKLYQTFYKRQHKRTLLPPRLSFDDLEFFIDIWTEDKLIFSEVVPGPVLQTGIKIPPTG 120

Query: 351 TSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDR 410
             ++L +HLE PE+KMTLPVEPRF++P            RKDSNKVA I+NKSLFDYIDR
Sbjct: 121 ICDMLKFHLEGPEYKMTLPVEPRFTVPWSQTVSVSVLVERKDSNKVACIINKSLFDYIDR 180

Query: 411 TSYRALAFDYLDLFTSPPVCLG 470
           T+YRALAFDYLD   + P   G
Sbjct: 181 TAYRALAFDYLDFSPNYPFISG 202

Query: 471  530
           
Sbjct: 241  202

Query: 531  590
           
Sbjct: 301  202

Query: 591  650
           
Sbjct: 361  202

Query: 651  710
           
Sbjct: 421  202

Query: 711  770
           
Sbjct: 481  202

Query: 771  830
           
Sbjct: 541  202

Query: 831  837
           
Sbjct: 601  202

[Close]

BLAST of WMU17405 vs. NCBI nr
Match: gi|255570292|ref|XP_002526106.1| (PREDICTED: F-box protein At5g39250 [Ricinus communis])

HSP 1 Score: 297.4 bits (760), Expect = 3.7e-77
Identity = 135/202 (66.83%), Postives = 160/202 (79.21%), Query Frame = 3


Query: 231 MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 290
           M+++EVLK +FPLL+GVDLASCM V KQWRD ARDDYFWKCLCAKRWPS CK PNPPT T
Sbjct: 1   MSYDEVLKAVFPLLDGVDLASCMVVSKQWRDTARDDYFWKCLCAKRWPSICKRPNPPTVT 60

Query: 291 YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 350
           Y KLY+ FYKR N + LLPPRLSFDDLEFFIDIWSE +LIFSEVV G VL  G+K PPPG
Sbjct: 61  YCKLYQTFYKRQNRQTLLPPRLSFDDLEFFIDIWSEEKLIFSEVVPGPVLLGGIKVPPPG 120

Query: 351 TSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDR 410
             ++L +HLE P++KMTLPVEPR  IP+           RKD+NKVAR++N+S+FDYIDR
Sbjct: 121 ICDILRFHLEGPDYKMTLPVEPRVKIPLSQTVSVSVLVGRKDTNKVARVINRSVFDYIDR 180

Query: 411 TSYRALAFDYLDLFTSPPVCLG 470
           T+YR++AF+YLD   + P   G
Sbjct: 181 TAYRSMAFEYLDFSPAHPFVPG 202

Query: 471  530
           
Sbjct: 241  202

Query: 531  590
           
Sbjct: 301  202

Query: 591  650
           
Sbjct: 361  202

Query: 651  710
           
Sbjct: 421  202

Query: 711  770
           
Sbjct: 481  202

Query: 771  830
           
Sbjct: 541  202

Query: 831  837
           
Sbjct: 601  202

[Close]

BLAST of WMU17405 vs. NCBI nr
Match: gi|1009125874|ref|XP_015879848.1| (PREDICTED: F-box protein At5g39250 [Ziziphus jujuba])

HSP 1 Score: 296.2 bits (757), Expect = 8.2e-77
Identity = 137/192 (71.35%), Postives = 157/192 (81.77%), Query Frame = 3


Query: 231 MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 290
           M  EEVLK +FPLLEGVDLASCMAV KQWR +A+DDY WKCLCAKRWPS CK PNPPT T
Sbjct: 1   MICEEVLKAVFPLLEGVDLASCMAVSKQWRSLAQDDYLWKCLCAKRWPSICKRPNPPTVT 60

Query: 291 YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 350
           YYKLY+ FYKR + R LLPPRLSFDDLEFFID+W+E+RLIFSEVV G VLQ G+K PP G
Sbjct: 61  YYKLYQTFYKRQHCRTLLPPRLSFDDLEFFIDVWTEDRLIFSEVVPGPVLQTGIKIPPAG 120

Query: 351 TSNVLSYHLEVPEFKMTLPVEPRFSIPIXXXXXXXXXXRRKDSNKVARIVNKSLFDYIDR 410
             ++L +HLE PE+KMTLPVEPRF +P+           RKD+NKVA I+NKS+FDYIDR
Sbjct: 121 ICDMLRFHLEGPEYKMTLPVEPRFKVPLSQTVSVSVLVGRKDTNKVACIINKSMFDYIDR 180

Query: 411 TSYRALAFDYLD 470
           T++RALAFDYLD
Sbjct: 181 TAFRALAFDYLD 192

Query: 471  530
           
Sbjct: 241  192

Query: 531  590
           
Sbjct: 301  192

Query: 591  650
           
Sbjct: 361  192

Query: 651  710
           
Sbjct: 421  192

Query: 711  770
           
Sbjct: 481  192

Query: 771  807
           
Sbjct: 541  192

The following BLAST results are available for this feature:

BLAST of WMU17405 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39250.1	1.4e-71	62.81	F-box family protein	[more]

BLAST of WMU17405 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB270_ARATH	2.6e-70	62.81	F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1	[more]

BLAST of WMU17405 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6S1_CUCSA	1.5e-93	82.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1	[more]
A0A0A0L6S1_CUCSA	5.1e-17	91.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1	[more]
A0A061EG72_THECC	1.8e-14	81.63	F-box protein OS=Theobroma cacao GN=TCM_018725 PE=4 SV=1	[more]
B9SJD7_RICCO	4.5e-13	79.59	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525640 PE=4 SV=1	[more]
M5X692_PRUPE	1.3e-12	75.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010438mg PE=4 SV=1	[more]

BLAST of WMU17405 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095831\|ref\|XP_008448789.1\|	8.4e-98	85.64	PREDICTED: F-box protein At5g39250 [Cucumis melo]	[more]
gi\|449458996\|ref\|XP_004147232.1\|	1.9e-94	82.67	PREDICTED: F-box protein At5g39250 [Cucumis sativus]	[more]
gi\|590650724\|ref\|XP_007032712.1\|	1.6e-80	70.30	F-box protein [Theobroma cacao]	[more]
gi\|255570292\|ref\|XP_002526106.1\|	3.7e-77	66.83	PREDICTED: F-box protein At5g39250 [Ricinus communis]	[more]
gi\|1009125874\|ref\|XP_015879848.1\|	8.2e-77	71.35	PREDICTED: F-box protein At5g39250 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla002300	Cla002300	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
AL0101E02	AL0101E02	EST
S1_0039941	S1_0039941	EST
S2_0021358	S2_0021358	EST
S2_0076559	S2_0076559	EST
S3_0007071	S3_0007071	EST
S3_0065109	S3_0065109	EST
S3_0127182	S3_0127182	EST
S3_0130863	S3_0130863	EST
S4_0114372	S4_0114372	EST
S4_0118958	S4_0118958	EST
S4_0133644	S4_0133644	EST
WMN28E11	WMN28E11	EST
WMN42C06	WMN42C06	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 5..43 score: 3.2
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 1..42 score: 8
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 5..81 score: 1.31
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 5..74 score: 4.2
None	No IPR available	PANTHER	PTHR20995	FAMILY NOT NAMED	coord: 4..249 score: 4.5E
None	No IPR available	PANTHER	PTHR20995:SF15	SUBFAMILY NOT NAMED	coord: 4..249 score: 4.5E