WMU10258 (transcribed_cluster) Watermelon (97103) v1

NameWMU10258
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr3 : 22499016 .. 22499526 (-)
Sequence length514
The following sequences are available for this feature:

transcribed_cluster sequence

CTTCACCCAACTTCCTCTTGTCCCTCTCCAAATCCACACCAACAACATCAAGAATCAAGATCATCATCCTCATGGATCCAACCAAAAATCAAATTCAAATTCCAATTCAAGATCGAAGAAAGAAGAACATGTAGAACAAGACTTTTTTGATCTTCTACCTGATGCAATTCTTCATCAAAATCTTCACCAAATTAATCGACGCTCGCTCTCTAATTCGATGCCTCGCCGTCTCCAAACGATTCGCCTCTACTCATTTCGCAATCCGACGCCGTTTTCCTCGCCATCCCTCGTCTTCTCTTCGATTCCAAGCACAAATCCAGAATCACTCCTCGCTCCCTGTCCAATTCCACGATTAGGTTTTTCTTTCGTAAGTTTCTGTTTACGCCTTTTCGTTTAATTCGGCGTCTGATTACTCGTACTTCGAAATCCAGTTCTGGATTTGGCGATTGGTACTACTGGCCAAGCGTTGCGTTGACGGAATTTAAAGGAATTAAGTTCGTTCATATGGAACTCC
BLAST of WMU10258 vs. TrEMBL
Match: A0A0A0M086_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G617380 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-12
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1

Query: 250 LISQSDAVFLAIPRLLFDSKHKSRITPRSLSNSTIXXXXXXXXXXXXXLIRRLITRTSKS 309
           LI QSD+VFL+IP LL     KSR TPRS +                  IRRLIT TS+S
Sbjct: 46  LIPQSDSVFLSIPPLLLTPNPKSRTTPRSPT-----FFLRKFFFNPFRFIRRLITHTSQS 105

Query: 310 SSGFGDWYYWPSVALTEFKGIKFVHMEL 369
           +  F DWYYWPSVAL E KG + +H++L
Sbjct: 106 TPRFTDWYYWPSVALKELKGFQSLHIQL 128

Query: 370 429
           
Sbjct: 166 128

Query: 430 489
           
Sbjct: 226 128

Query: 490 514
           
Sbjct: 286 128

BLAST of WMU10258 vs. TrEMBL
Match: A0A0A0M086_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G617380 PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 5.6e+00
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 3

Query: 180 IFTKLIDARSLIRCLAVSKRFAS 239
           IFTKL  A SLIRCLAVSKRFAS
Sbjct: 23  IFTKLTHAPSLIRCLAVSKRFAS 45

Query: 240 249
           
Sbjct: 83  45

BLAST of WMU10258 vs. NCBI nr
Match: gi|659098966|ref|XP_008450369.1| (PREDICTED: F-box protein At4g18380-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 1

Query: 250 LISQSDAVFLAIPRLLFDSKHKSRITPRSLSNSTIXXXXXXXXXXXXXLIRRLITRTSKS 309
           LISQSD+VFL+IP LL     KSR TP SL                   IRRLIT TS+S
Sbjct: 60  LISQSDSVFLSIPPLLLTPNPKSRTTPPSLR-----FFFRKFLFNPFRFIRRLITHTSQS 119

Query: 310 SSGFGDWYYWPSVALTEFKGIKFVHMEL 369
           +S F DWYYWPSVAL E KG+K +H+EL
Sbjct: 120 TSRFSDWYYWPSVALKELKGLKSLHIEL 142

Query: 370 429
           
Sbjct: 180 142

Query: 430 489
           
Sbjct: 240 142

Query: 490 514
           
Sbjct: 300 142

BLAST of WMU10258 vs. NCBI nr
Match: gi|449442571|ref|XP_004139055.1| (PREDICTED: F-box protein At4g18380-like [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1

Query: 250 LISQSDAVFLAIPRLLFDSKHKSRITPRSLSNSTIXXXXXXXXXXXXXLIRRLITRTSKS 309
           LI QSD+VFL+IP LL     KSR TPRS +                  IRRLIT TS+S
Sbjct: 46  LIPQSDSVFLSIPPLLLTPNPKSRTTPRSPT-----FFLRKFFFNPFRFIRRLITHTSQS 105

Query: 310 SSGFGDWYYWPSVALTEFKGIKFVHMEL 369
           +  F DWYYWPSVAL E KG + +H++L
Sbjct: 106 TPRFTDWYYWPSVALKELKGFQSLHIQL 128

Query: 370 429
           
Sbjct: 166 128

Query: 430 489
           
Sbjct: 226 128

Query: 490 514
           
Sbjct: 286 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0M086_CUCSA6.4e-1250.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G617380 PE=4 SV=1[more]
A0A0A0M086_CUCSA5.6e+0086.96Uncharacterized protein OS=Cucumis sativus GN=Csa_1G617380 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659098966|ref|XP_008450369.1|2.0e-1454.55PREDICTED: F-box protein At4g18380-like [Cucumis melo][more]
gi|449442571|ref|XP_004139055.1|3.2e-1250.00PREDICTED: F-box protein At4g18380-like [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla006335Cla006335gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0148981S1_0148981EST
WMN78F12WMN78F12EST