MELO3C019345T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C019345T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionShaggy-like kinase
Locationchr11 : 12137447 .. 12137785 (-)
Sequence length339
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTGCTTGAAATGAAGTTATCGCTTGAAGAACCAGGTATGAGGACCATTGAAACAAAAGCTAAGAAAAGTGAAGTGGAGCCATCTAAACTTGAGGAGGCCCAACGAGGTGGTGAAAAGAGACCCCAAGGAATTGACAAGCTAATTAAAGTGGAAAAAGGATTATTTCCTTTCAATGAGGCCCTTCCAAACTTCATCTTCTCGTCAATCAAGGCATTTGGGTGGAATAAGTTTTTCACCGGGGAGACCAAGGTCATATTGGATGTGGTCAATAAGTTCTATGATGCGAAGTACCATCCAACTGATTACTTTGTTATAATTGAAGGCGAATATTGA

mRNA sequence

ATGAGCTTGCTTGAAATGAAGTTATCGCTTGAAGAACCAGGTATGAGGACCATTGAAACAAAAGCTAAGAAAAGTGAAGTGGAGCCATCTAAACTTGAGGAGGCCCAACGAGGTGGTGAAAAGAGACCCCAAGGAATTGACAAGCTAATTAAAGTGGAAAAAGGATTATTTCCTTTCAATGAGGCCCTTCCAAACTTCATCTTCTCGTCAATCAAGGCATTTGGGTGGAATAAGTTTTTCACCGGGGAGACCAAGGTCATATTGGATGTGGTCAATAAGTTCTATGATGCGAAGTACCATCCAACTGATTACTTTGTTATAATTGAAGGCGAATATTGA

Coding sequence (CDS)

ATGAGCTTGCTTGAAATGAAGTTATCGCTTGAAGAACCAGGTATGAGGACCATTGAAACAAAAGCTAAGAAAAGTGAAGTGGAGCCATCTAAACTTGAGGAGGCCCAACGAGGTGGTGAAAAGAGACCCCAAGGAATTGACAAGCTAATTAAAGTGGAAAAAGGATTATTTCCTTTCAATGAGGCCCTTCCAAACTTCATCTTCTCGTCAATCAAGGCATTTGGGTGGAATAAGTTTTTCACCGGGGAGACCAAGGTCATATTGGATGTGGTCAATAAGTTCTATGATGCGAAGTACCATCCAACTGATTACTTTGTTATAATTGAAGGCGAATATTGA

Protein sequence

MSLLEMKLSLEEPGMRTIETKAKKSEVEPSKLEEAQRGGEKRPQGIDKLIKVEKGLFPFNEALPNFIFSSIKAFGWNKFFTGETKVILDVVNKFYDAKYHPTDYFVIIEGEY*
Homology
[Close]
BLAST of MELO3C019345T1 vs. TrEMBL
Match: A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-13
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 46  IDKLIKVEKGLFPFNEALPNFIFSSIKAFGWNKFFTGETKVILDVVNKFYDAKYHPTDYF 105
           +D+LIK+EKGL  FN +LP+F+++ IKA  W KFFT ETKV  DVV+ FY  K+HP + +
Sbjct: 6   LDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESY 65

Query: 106 VIIEGE 112
            I++ E
Sbjct: 66  AIVDDE 71

[Close]
BLAST of MELO3C019345T1 vs. NCBI nr
Match: gi|700209877|gb|KGN64973.1| (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 9.4e-13
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 46  IDKLIKVEKGLFPFNEALPNFIFSSIKAFGWNKFFTGETKVILDVVNKFYDAKYHPTDYF 105
           +D+LIK+EKGL  FN +LP+F+++ IKA  W KFFT ETKV  DVV+ FY  K+HP + +
Sbjct: 6   LDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESY 65

Query: 106 VIIEGE 112
            I++ E
Sbjct: 66  AIVDDE 71

The following BLAST results are available for this feature:
BLAST of MELO3C019345T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT82_CUCSA6.5e-1353.03Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169970 PE=4 SV=1[more]
BLAST of MELO3C019345T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209877|gb|KGN64973.1|9.4e-1353.03hypothetical protein Csa_1G169970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C019345MELO3C019345gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C019345T1MELO3C019345T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C019345T1.cds1MELO3C019345T1.cds1CDS