MELO3C012883T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C012883T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative Athila retroelement ORF1 protein
Locationchr4 : 13927993 .. 13928766 (-)
Sequence length504
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAACGCAGGCAACAAGAGACATCTTCAAGAATGGGGTGCTAGAGAAGATGATAGACCCTAATAGCTTCTTGATACCCTACTCGATAGGCGGAATGGATTTGGGTCGTGCTCTATGTGACCTTAAAGCAAGCATCAATTTCATGTCTCTTTCTATCTTCATGAAATTAGAGATAAGGGAGGTTTAACCAACTCACATAAGGCTTCAGTTTGCTGACAGATCCATCGTCAAGCTAAAGAGCAAGATTGGAGATTTTTTAGTGAAGGTGGATAAATATTTGTTTCCCGCTGACTTCGTTATGCTGGATTATGAAGTTGACTGAGAGTTTCCAATCATTTTGGGGCGGCCATTCCTATCAATTGTCTGCACCCTCATAGACGTCCACCAAGAGGAGTTGACAATGTGTTTTAATAATGAAGAAGTTAAGTTCAAAATTATCAATGTGATGTAGTTCCCCACTGATGATGAAACCTACAGTGCGATAGAGTCCCTTCGATGGGACTATTGCGAGGAAGAAGTCTATCATGAGCTATTCAACACTGAAGAATTCTTTGAAGAAGAAGACCTAAGTTATATACTGAAAGAAGTAAACATCGTGTCTGGCGAAAGGAATTTTGAGTCTTTGGATTTGCAAACCAAAGGCAAGAAGAAGACAAAGCCATCAATCGAAGAACCACCAAAGTTAGAGCTCAAGCATTTACCCAATCACCTAAAGTATGCATACTTGAGGGAGAATGACACTCTTCCAATCATTATATCCACCCACTAG

mRNA sequence

ATGGCTTTAACGCAGGCAACAAGAGACATCTTCAAGAATGGGGTGCTAGAGAAGATGATAGACCCTAATAGCTTCTTGATACCCTACTCGATAGGCGGAATGGATTTGGGTCGTGCTCTATGTGACCTTAAAGCAAGCATCAATTTCATGTCTCTTTCTATCTTCATGAAATTAGAGATAAGGGAGTTCCCCACTGATGATGAAACCTACAGTGCGATAGAGTCCCTTCGATGGGACTATTGCGAGGAAGAAGTCTATCATGAGCTATTCAACACTGAAGAATTCTTTGAAGAAGAAGACCTAAGTTATATACTGAAAGAAGTAAACATCGTGTCTGGCGAAAGGAATTTTGAGTCTTTGGATTTGCAAACCAAAGGCAAGAAGAAGACAAAGCCATCAATCGAAGAACCACCAAAGTTAGAGCTCAAGCATTTACCCAATCACCTAAAGTATGCATACTTGAGGGAGAATGACACTCTTCCAATCATTATATCCACCCACTAG

Coding sequence (CDS)

ATGGCTTTAACGCAGGCAACAAGAGACATCTTCAAGAATGGGGTGCTAGAGAAGATGATAGACCCTAATAGCTTCTTGATACCCTACTCGATAGGCGGAATGGATTTGGGTCGTGCTCTATGTGACCTTAAAGCAAGCATCAATTTCATGTCTCTTTCTATCTTCATGAAATTAGAGATAAGGGAGTTCCCCACTGATGATGAAACCTACAGTGCGATAGAGTCCCTTCGATGGGACTATTGCGAGGAAGAAGTCTATCATGAGCTATTCAACACTGAAGAATTCTTTGAAGAAGAAGACCTAAGTTATATACTGAAAGAAGTAAACATCGTGTCTGGCGAAAGGAATTTTGAGTCTTTGGATTTGCAAACCAAAGGCAAGAAGAAGACAAAGCCATCAATCGAAGAACCACCAAAGTTAGAGCTCAAGCATTTACCCAATCACCTAAAGTATGCATACTTGAGGGAGAATGACACTCTTCCAATCATTATATCCACCCACTAG

Protein sequence

MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEIREFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKEVNIVSGERNFESLDLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLRENDTLPIIISTH*
Homology
[Close]
BLAST of MELO3C012883T1 vs. TrEMBL
Match: A5AJB0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039302 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 54/153 (35.29%), Postives = 79/153 (51.63%), Query Frame = 1 

Query: 18  KMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEIREF-PTDDETYSAIESL 77
           K  DP    I  SIGG  + +AL DL AS+N +  S++ +L + E  PT      A  S+
Sbjct: 396 KYKDPGCPTISVSIGGTCVEKALLDLGASVNLLPYSVYKQLGLGELKPTSITLSLADRSV 455

Query: 78  RWDY-CEEEVYHELFNTEEFFEE--EDLSYILKEVNIVSGERNFESLDLQTKGKKKTKPS 137
           +      E+V  +L  +    +E     SY+L  ++     R  E L L  + ++  K +
Sbjct: 456 KIPRGMIEDVLEDLIESFGDLDEGLPKPSYLLATLS--PWRRRKEILPLFNE-EETQKAA 515

Query: 138 IEEPPKLELKHLPNHLKYAYLRENDTLPIIIST 167
            EEPPKL LK LP  LKYAYL E+   P++IS+
Sbjct: 516 KEEPPKLILKPLPTELKYAYLEEDKKCPVVISS 545

[Close]
BLAST of MELO3C012883T1 vs. TrEMBL
Match: Q2AA50_ASPOF (Retrotransposon gag protein OS=Asparagus officinalis GN=19.t00014 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 1 

Query: 81  CEEEVYHELFNTEEFFEEE-DLSYILKEVNIVSGERNFESLDLQTKGKKKTKPSIEEPPK 140
           CE +        EE  ++E ++  ++  V  V  +R      L+T+ + + +PS+EEPPK
Sbjct: 703 CESDSNASDIMIEELSDDELEIEPLINHVFSVGWQRE----PLETEPRVQLRPSVEEPPK 762

Query: 141 LELKHLPNHLKYAYLRENDTLPIIIST 167
           LELK LP +L+YAYL EN++LP+IIS+
Sbjct: 763 LELKPLPENLEYAYLGENESLPVIISS 785

[Close]
BLAST of MELO3C012883T1 vs. TrEMBL
Match: A0A0A0KMT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G365660 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 62  EFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKEVNIVSGERNFESLD 121
           + P D +  S+IE   W Y EE++YH+LF+TEEFF++E    +L++VN +SGER FE LD
Sbjct: 2   KLPADVKNCSSIEVPGWGYYEEDIYHQLFSTEEFFKDE--LELLEKVNAMSGERMFEPLD 60

Query: 122 L 123
           L
Sbjct: 62  L 60

[Close]
BLAST of MELO3C012883T1 vs. TrEMBL
Match: Q2AA10_ASPOF (Putative uncharacterized protein OS=Asparagus officinalis GN=20.t00039 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 1   MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 60
           +ALTQ   DI +N +  K+ DP SF IP +IG M + RALCDL AS+N M LSI  KL+I
Sbjct: 93  VALTQECSDIIQNKLPPKLKDPGSFSIPCTIGDMSINRALCDLGASVNLMPLSICNKLQI 152

[Close]
BLAST of MELO3C012883T1 vs. TrEMBL
Match: M1DH28_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400038510 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 96  FEEEDLSYILKEVNIV--SGERNFE----SLDLQTKGKKKTKPSIEEPPKLELKHLPNHL 155
           FE +  S  ++ VN +  +GE ++     +LDL+ +    TKPS+EEPP LELK LPNHL
Sbjct: 195 FETDFRSDYVETVNALHGNGEHSYAPKKLNLDLKNRPSPPTKPSLEEPPVLELKQLPNHL 254

Query: 156 KYAYLRENDTLPIIIS 166
           +Y +   N+TLP+I++
Sbjct: 255 RYVFFGTNNTLPVILA 270

[Close]
BLAST of MELO3C012883T1 vs. NCBI nr
Match: gi|697117037|ref|XP_009612444.1| (PREDICTED: uncharacterized protein LOC104105765 [Nicotiana tomentosiformis])

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 65/180 (36.11%), Postives = 92/180 (51.11%), Query Frame = 1 

Query: 1   MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 60
           + LTQ    +    + +K+ D  SF IP +I      +ALCDL A+IN M L+I+ KL I
Sbjct: 30  ITLTQTCSAVVTRLIAQKVSDLGSFTIPCTIWSYAFAKALCDLGATINLMHLAIYTKLGI 89

Query: 61  -REFPTDDETYSAIESLRWDYCEEEVYHELFNTEE-------FFEEEDLSYILKEVNIVS 120
            R  PT       +E +     EE+   E  N  +         EE+D   + + V  + 
Sbjct: 90  DRARPTSMLLQLLVEFVDVILQEED---ETLNVRDPLEACLMNLEEKDGEGLAEWVMDLE 149

Query: 121 G------ERNFESLDLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLRENDTLPIIIST 167
           G      E  F+ L L+ +     KPSIEEPP+L+LK LP HL+Y +L  N TLP+IIS+
Sbjct: 150 GQGFWKREPRFDPLRLEERATPPAKPSIEEPPQLDLKPLPAHLRYVFLWPNSTLPVIISS 206

[Close]
BLAST of MELO3C012883T1 vs. NCBI nr
Match: gi|659093662|ref|XP_008447648.1| (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 5.7e-14
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 1  MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 60
          MAL QAT DI+KNGVLEKM  P SF +P SI GMDLG  LCDL ASIN M LSIF KL+I
Sbjct: 24 MALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKI 83

Query: 61 RE 63
          +E
Sbjct: 84 KE 85

[Close]
BLAST of MELO3C012883T1 vs. NCBI nr
Match: gi|971536423|ref|XP_015166432.1| (PREDICTED: uncharacterized protein LOC107061540 [Solanum tuberosum])

HSP 1 Score: 86.3 bits (212), Expect = 5.7e-14
Identity = 67/213 (31.46%), Postives = 92/213 (43.19%), Query Frame = 1 

Query: 10  IFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFM------------- 69
           I  N    K  DP +F +P +IG     +ALCDL ASIN M  +I+              
Sbjct: 370 IMTNDSFTKREDPGAFTMPCTIGMFQFAKALCDLGASINLMPYAIYKQLDCEFDAEIPII 429

Query: 70  ------------------KLEIREFPTDDETYSAIESLRW-------------DYCEEEV 129
                             KL+ R    DD T++  +S++              D   E V
Sbjct: 430 LGRPFLATWRELVYVESRKLKFR-VNDDDVTFNICKSMKQPSNIHVVSIEDVIDEAVESV 489

Query: 130 YHELFNTEEF------FEEEDLSYILKEVNIVSGERNFE------SLDLQTKGKKKTKPS 167
            H +   E F      ++E ++      V  +SG R +        +DL+ +     KPS
Sbjct: 490 SHLMRKNEPFESVLANYDESEVQGYKDVVAALSGLRAYSRNPIKFDIDLKNRESPPAKPS 549

[Close]
BLAST of MELO3C012883T1 vs. NCBI nr
Match: gi|823127602|ref|XP_012437546.1| (PREDICTED: uncharacterized protein LOC105763753 [Gossypium raimondii])

HSP 1 Score: 85.5 bits (210), Expect = 9.7e-14
Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = 1 

Query: 1   MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 60
           +ALT+    +  N +  K+ DP SF I  SIG   +G  LCDL A+IN M +S+F +L I
Sbjct: 24  VALTEGCTTMLMNKLRPKLKDPRSFTISCSIGNQYIGNILCDLGANINLMPMSVFKRLGI 83

Query: 61  -REFPTD-------DETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKE----- 120
            +  PT        D T+     L+    ++ ++       E   ++D+  IL+      
Sbjct: 84  GKARPTKIRCNWLVDPTHIRKVKLKVVRIDQFIFPTDVLILECEADQDVPIILERPFLAT 143

Query: 121 ----VNIVSGE----------RNFESLDLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAY 165
               +++  GE          + FESLDL        KPSI+EPP LELK L  HLKYA 
Sbjct: 144 GRSLIDVQKGELTMMFADRPGKKFESLDLSDCYFNPPKPSIKEPPTLELKPLLQHLKYAS 203

[Close]
BLAST of MELO3C012883T1 vs. NCBI nr
Match: gi|743776598|ref|XP_010918710.1| (PREDICTED: uncharacterized protein LOC105043014 [Elaeis guineensis])

HSP 1 Score: 82.4 bits (202), Expect = 8.2e-13
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 1 

Query: 3   LTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEIRE 62
           LT+    I +N +  K+ DP SF IP +IG ++  +ALCDL ASIN M LSIF KL + +
Sbjct: 79  LTEECSAIIQNKLPSKLKDPGSFTIPCNIGNIEFTKALCDLGASINLMPLSIFRKLGLGD 138

Query: 63  F-PTDDETYSAIESLRWDYCEEEVYHELFNTEEFF-----------EEEDLSYILKEVNI 122
             PT      A  S+   Y +  V   L   ++F            E+ ++  IL    +
Sbjct: 139 VKPTSVSLQLADRSV--TYLKGIVEDVLVKVDKFIFPVNFIILDMEEDREVPLILGRPFL 198

Query: 123 VSGERNFE----SLDLQT---------KGKKKTKPSIEEP--PKLELKHLPNHLKYAYLR 168
            +G+   +     L L+             +K + S+E    PKLELK LP+HL+YA+LR
Sbjct: 199 ATGKALIDVYEGKLTLRVGQEEHVDVLNDVEKIQDSVEAKPNPKLELKQLPSHLRYAFLR 258

The following BLAST results are available for this feature:
BLAST of MELO3C012883T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AJB0_VITVI1.2e-0735.29Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039302 PE=4 SV=1[more]
Q2AA50_ASPOF2.1e-0740.23Retrotransposon gag protein OS=Asparagus officinalis GN=19.t00014 PE=4 SV=1[more]
A0A0A0KMT5_CUCSA2.7e-0750.82Uncharacterized protein OS=Cucumis sativus GN=Csa_5G365660 PE=4 SV=1[more]
Q2AA10_ASPOF2.7e-0755.00Putative uncharacterized protein OS=Asparagus officinalis GN=20.t00039 PE=4 SV=1[more]
M1DH28_SOLTU2.7e-0743.42Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400038510 PE=4 SV=1[more]
BLAST of MELO3C012883T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|697117037|ref|XP_009612444.1|3.9e-1536.11PREDICTED: uncharacterized protein LOC104105765 [Nicotiana tomentosiformis][more]
gi|659093662|ref|XP_008447648.1|5.7e-1470.97PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo][more]
gi|971536423|ref|XP_015166432.1|5.7e-1431.46PREDICTED: uncharacterized protein LOC107061540 [Solanum tuberosum][more]
gi|823127602|ref|XP_012437546.1|9.7e-1434.55PREDICTED: uncharacterized protein LOC105763753 [Gossypium raimondii][more]
gi|743776598|ref|XP_010918710.1|8.2e-1333.33PREDICTED: uncharacterized protein LOC105043014 [Elaeis guineensis][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C012883MELO3C012883gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C012883T1MELO3C012883T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C012883T1.cds2MELO3C012883T1.cds2CDS
MELO3C012883T1.cds1MELO3C012883T1.cds1CDS