Cla002460 (gene) Watermelon (97103) v1

Overview
NameCla002460
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 9798623 .. 9798820 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAGCGATAATGCCAAAGCTCGCCGTCGACGGCGGTCAGGGAATGTTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGGTCAGCTCGAAGGACCGGCGGCAGTCAAACCAACCGTGTCCCTCCGCCGAAGATGAGCTCTGGTGGCGGCGGTAAGACAAATTAG

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAGCGATAATGCCAAAGCTCGCCGTCGACGGCGGTCAGGGAATGTTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGGTCAGCTCGAAGGACCGGCGGCAGTCAAACCAACCGTGTCCCTCCGCCGAAGATGAGCTCTGGTGGCGGCGGTAAGACAAATTAG

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAGCGATAATGCCAAAGCTCGCCGTCGACGGCGGTCAGGGAATGTTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGGTCAGCTCGAAGGACCGGCGGCAGTCAAACCAACCGTGTCCCTCCGCCGAAGATGAGCTCTGGTGGCGGCGGTAAGACAAATTAG

Protein sequence

MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRLSRSARRTGGSQTNRVPPPKMSSGGGGKTN
Homology
[Close]
BLAST of Cla002460 vs. TrEMBL
Match: A0A0A0KAN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-12
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 

Query: 1  MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRL-SRSARRTGGSQTNRVPPPKMSSG 60
          MESSSSSL+K+N+DNAKA R R S N G G QINR  SR  +R   S+TNR PPPK S+G
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGKTN 66
          GGG+TN
Sbjct: 61 GGGQTN 66

[Close]
BLAST of Cla002460 vs. TrEMBL
Match: A0A0A0L7D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 38/65 (58.46%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 1  MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRLSRSARRTGGSQTNRVPPPKMSSGG 60
          MESSSS LQK+N DNAKA R RR   V A     R SR  RR   S+ N  PPPK S+GG
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRL-TVNA----RRHSRPPRRARNSKINPAPPPKKSTGG 60

Query: 61 GGKTN 66
          GG+TN
Sbjct: 61 GGQTN 60

[Close]
BLAST of Cla002460 vs. NCBI nr
Match: gi|700190695|gb|KGN45899.1| (hypothetical protein Csa_6G020130 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 

Query: 1  MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRL-SRSARRTGGSQTNRVPPPKMSSG 60
          MESSSSSL+K+N+DNAKA R R S N G G QINR  SR  +R   S+TNR PPPK S+G
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGKTN 66
          GGG+TN
Sbjct: 61 GGGQTN 66

[Close]
BLAST of Cla002460 vs. NCBI nr
Match: gi|700202575|gb|KGN57708.1| (hypothetical protein Csa_3G258100 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 38/65 (58.46%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 1  MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRLSRSARRTGGSQTNRVPPPKMSSGG 60
          MESSSS LQK+N DNAKA R RR   V A     R SR  RR   S+ N  PPPK S+GG
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRL-TVNA----RRHSRPPRRARNSKINPAPPPKKSTGG 60

Query: 61 GGKTN 66
          GG+TN
Sbjct: 61 GGQTN 60

The following BLAST results are available for this feature:
BLAST of Cla002460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAN3_CUCSA1.1e-1265.15Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1[more]
A0A0A0L7D2_CUCSA1.4e-0758.46Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1[more]
BLAST of Cla002460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190695|gb|KGN45899.1|1.6e-1265.15hypothetical protein Csa_6G020130 [Cucumis sativus][more]
gi|700202575|gb|KGN57708.1|2.0e-0758.46hypothetical protein Csa_3G258100 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002460Cla002460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla002460Cla97C08G146770Watermelon (97103) v2wmwmbB105
Cla002460ClCG08G002910Watermelon (Charleston Gray)wcgwmB406
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002460Melon (DHL92) v3.6.1medwmB306
Cla002460Cucumber (Chinese Long) v3cucwmB491
Cla002460Cucumber (Gy14) v1cgywmB661
Cla002460Wild cucumber (PI 183967)cpiwmB480
Cla002460Watermelon (Charleston Gray)wcgwmB410
Cla002460Cucumber (Chinese Long) v2cuwmB463
Cla002460Cucumber (Gy14) v2cgybwmB436