Cla002307.1 (mRNA) Watermelon (97103) v1

Overview
NameCla002307
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 14422813 .. 14423163 (+)
Sequence length351
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCTTCTGAAGGAATACATGCAGAAGAATGACACCTTGTTGCAAACCCAGGCGTCGTCCATCCAGAATTTAGAGCTTCAGATTGGCCAGATTGCTGGAGAGCTTAAGACGCGGCAAAAAGGATCTCTTCCGAGCAACACCGAAGCCTCACGCGGTACGGGCAGTTCAGGAAAAGAACAGTGTCAAGCTGTGACATTGCGAATTGGAAGAGCCATGAATGAACTTCCCCGCCCAAAGAACTCTAAACCAACAATTCATCTTTCCAATCCCACCATTGAATCTAACCATTCAACACAACAAAAACAAGCTGACATGCAAAGAAGTTTATCAGGGAAAGATGCATAA

mRNA sequence

ATGGAAGCTCTTCTGAAGGAATACATGCAGAAGAATGACACCTTGTTGCAAACCCAGGCGTCGTCCATCCAGAATTTAGAGCTTCAGATTGGCCAGATTGCTGGAGAGCTTAAGACGCGGCAAAAAGGATCTCTTCCGAGCAACACCGAAGCCTCACGCGGTACGGGCAGTTCAGGAAAAGAACAGTGTCAAGCTGTGACATTGCGAATTGGAAGAGCCATGAATGAACTTCCCCGCCCAAAGAACTCTAAACCAACAATTCATCTTTCCAATCCCACCATTGAATCTAACCATTCAACACAACAAAAACAAGCTGACATGCAAAGAAGTTTATCAGGGAAAGATGCATAA

Coding sequence (CDS)

ATGGAAGCTCTTCTGAAGGAATACATGCAGAAGAATGACACCTTGTTGCAAACCCAGGCGTCGTCCATCCAGAATTTAGAGCTTCAGATTGGCCAGATTGCTGGAGAGCTTAAGACGCGGCAAAAAGGATCTCTTCCGAGCAACACCGAAGCCTCACGCGGTACGGGCAGTTCAGGAAAAGAACAGTGTCAAGCTGTGACATTGCGAATTGGAAGAGCCATGAATGAACTTCCCCGCCCAAAGAACTCTAAACCAACAATTCATCTTTCCAATCCCACCATTGAATCTAACCATTCAACACAACAAAAACAAGCTGACATGCAAAGAAGTTTATCAGGGAAAGATGCATAA

Protein sequence

MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGKEQCQAVTLRIGRAMNELPRPKNSKPTIHLSNPTIESNHSTQQKQADMQRSLSGKDA
Homology
[Close]
BLAST of Cla002307 vs. TrEMBL
Match: A0A0A0KMN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGK 60
           ME+L +EYMQ+ND LLQ+QA+SI+NLELQ+GQIA ++  + KG+LPSNTE     GSSGK
Sbjct: 70  MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGK 129

Query: 61  EQCQAVTL 69
           E+CQAVTL
Sbjct: 130 EKCQAVTL 137

[Close]
BLAST of Cla002307 vs. TrEMBL
Match: A0A0A0KN83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.7e-12
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGK 60
           MEAL +EYMQ+ND LLQ+QASSI+NLELQ+GQ+A ++  R KG+L  NT+     G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 61  EQCQAVTLRIGR 73
           ++ Q VTLR  R
Sbjct: 108 KKSQLVTLRSRR 119

[Close]
BLAST of Cla002307 vs. TrEMBL
Match: A0A061FVX6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 34/113 (30.09%), Postives = 70/113 (61.95%), Query Frame = 1 

Query: 2   EALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGKE 61
           E  L +Y+ KND ++Q+ ++S++NL+ Q+GQ+A  +  R + +LPS+T+ +      GKE
Sbjct: 212 EEFLLQYISKNDAIIQSYSASLRNLKTQVGQLANSINNRPQCALPSDTQVN----PKGKE 271

Query: 62  QCQAVTLRIGRAMNELPRPKNSKPTIHLSNPTIESNHSTQQKQADMQRSLSGK 115
            C AVTLR G+ +  +     ++ +I  S   I+ + +  +K+ +++++ +G+
Sbjct: 272 HCNAVTLRSGKEVKGV-----NEKSIESSKEHIDDDKAIVKKEVEVEKTDNGQ 315

[Close]
BLAST of Cla002307 vs. TrEMBL
Match: A0A061EW79_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGK 60
           ME +  ++M K +  +Q QA+SI+NLE+Q+GQ+A  L  R +G LPS+TE +      GK
Sbjct: 246 MEDIFMQFMTKTNAFIQNQATSIRNLEIQVGQLASALNIRPQGILPSDTEPN--PRREGK 305

Query: 61  EQCQAVTLRIGRAMNELP 79
           E C A+TL  G+  N+LP
Sbjct: 306 EHCMAITLHNGKE-NKLP 320

[Close]
BLAST of Cla002307 vs. TrEMBL
Match: A0A061G9E9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGK 60
           ME +  +YM K D  +Q+Q +SI+NLE Q+GQ+A  L  +  G+LPS+ E +  T   GK
Sbjct: 68  MEDMFMQYMTKIDAFIQSQTTSIRNLEAQVGQLANALNNKPHGTLPSDNEPNSKT--EGK 127

Query: 61  EQCQAVTLRIGRAMN 76
           E  + + LR G+ ++
Sbjct: 128 EHYKVINLRNGKKVS 140

[Close]
BLAST of Cla002307 vs. NCBI nr
Match: gi|700194490|gb|KGN49667.1| (hypothetical protein Csa_5G055570 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 5.5e-16
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGK 60
           ME+L +EYMQ+ND LLQ+QA+SI+NLELQ+GQIA ++  + KG+LPSNTE     GSSGK
Sbjct: 70  MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGK 129

Query: 61  EQCQAVTL 69
           E+CQAVTL
Sbjct: 130 EKCQAVTL 137

[Close]
BLAST of Cla002307 vs. NCBI nr
Match: gi|700195831|gb|KGN51008.1| (hypothetical protein Csa_5G403040 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-12
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGK 60
           MEAL +EYMQ+ND LLQ+QASSI+NLELQ+GQ+A ++  R KG+L  NT+     G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 61  EQCQAVTLRIGR 73
           ++ Q VTLR  R
Sbjct: 108 KKSQLVTLRSRR 119

[Close]
BLAST of Cla002307 vs. NCBI nr
Match: gi|985470850|ref|XP_015381091.1| (PREDICTED: uncharacterized protein LOC107174587 [Citrus sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-10
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGK 60
           +EAL+K+Y+ KN+ ++Q+ A+S++NLE QIGQ+A  +  R +GSLPSNTE  R     GK
Sbjct: 110 LEALIKDYIVKNEAVVQSHAASLRNLENQIGQLATAVSNRPQGSLPSNTENPR---REGK 169

Query: 61  EQCQAVTLRIGRAMN 76
           E C+ + LR G+ ++
Sbjct: 170 EHCKVINLRSGKEVD 181

[Close]
BLAST of Cla002307 vs. NCBI nr
Match: gi|985466626|ref|XP_015389623.1| (PREDICTED: uncharacterized protein LOC107178680 [Citrus sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-10
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGK 60
           +E L+KEY+ KN+ ++Q+QA S++NLE QIGQ+A  + +R +GSLPSNTE  R      K
Sbjct: 285 LEVLIKEYIAKNEAIVQSQAVSLRNLENQIGQLATVMSSRTQGSLPSNTEDHR---RESK 344

Query: 61  EQCQAVTLRIGRAMN-ELPRPKNSKPTIHLSNPT 94
           E C+ ++LR G+ ++  +   KN    I    PT
Sbjct: 345 EHCKVISLRSGKHVDIPVEVTKNGIEGISAQKPT 375

[Close]
BLAST of Cla002307 vs. NCBI nr
Match: gi|985444830|ref|XP_015384957.1| (PREDICTED: uncharacterized protein LOC107176654 [Citrus sinensis])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 39/103 (37.86%), Postives = 62/103 (60.19%), Query Frame = 1 

Query: 1   MEALLKEYMQKNDTLLQTQASSIQNLELQIGQIAGELKTRQKGSLPSNTEASRGTGSSGK 60
           +E L+K+Y+ KN+ ++Q+   S++NLE QIGQ+A  L  R +GSLPSNTE  R     GK
Sbjct: 68  LEGLIKDYIVKNEAVIQSHTVSLRNLENQIGQLAAALSNRPQGSLPSNTEDLR---REGK 127

Query: 61  EQCQAVTLRIGRAMNEL---PRPKNSKPTIHLSNPTIESNHST 101
           E C+ + LR  + ++ L   P+ +    +IH      + +HS+
Sbjct: 128 EHCKVINLRSEKDVHGLVGVPKRRAEPTSIHKETQIEKDSHSS 167

The following BLAST results are available for this feature:
BLAST of Cla002307 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMN3_CUCSA3.8e-1666.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1[more]
A0A0A0KN83_CUCSA5.7e-1255.56Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1[more]
A0A061FVX6_THECC1.0e-0830.09Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1[more]
A0A061EW79_THECC1.3e-0844.87Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1[more]
A0A061G9E9_THECC1.6e-0640.00Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1[more]
BLAST of Cla002307 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194490|gb|KGN49667.1|5.5e-1666.18hypothetical protein Csa_5G055570 [Cucumis sativus][more]
gi|700195831|gb|KGN51008.1|8.2e-1255.56hypothetical protein Csa_5G403040 [Cucumis sativus][more]
gi|985470850|ref|XP_015381091.1|4.5e-1046.67PREDICTED: uncharacterized protein LOC107174587 [Citrus sinensis][more]
gi|985466626|ref|XP_015389623.1|4.5e-1042.55PREDICTED: uncharacterized protein LOC107178680 [Citrus sinensis][more]
gi|985444830|ref|XP_015384957.1|5.8e-1037.86PREDICTED: uncharacterized protein LOC107176654 [Citrus sinensis][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla002307Cla002307gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla002307Cla002307.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla002307.1.cds1Cla002307.1.cds1CDS