Cla002300 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002300
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	F-box family protein-like (AHRD V1 ***- Q307Y5_SOLTU); contains Interpro domain(s) IPR001810 Cyclin-like F-box
Location	Chr7 : 14168971 .. 14169720 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATGGGAAGAAGTTTTGAAGGTGATTTTCCCTTTGCTGGAAGGTGTGGACCTTGCTTCCTGCATGGCAGTGTGCAAGCAGTGGAGAGACATTGCGCGAGATGATTACTTCTGGAAATGCTTGTGTGCCAAGAGATGGCCTTCAACCTGCAAAACGCCCAATCCTCCAACAGATACCTACTACAAACTATATCGAAATTTTTACAAACGCCCCAATAATCGGTGTCTTCTCCCTCCTCGACTTTCCTTTGATGATTTAGAGTTTTTTATCGACATTTGGAGTGAAAACAGATTAATCTTCTCAGAAGTGGTTTCAGGTCAAGTCCTCCAGAATGGTATGAAGAAGCCACCACCTGGTACTAGTAATGTGCTTAGTTATCACCTCGAAGTCCCTGAGTTCAAAATGACACTCCCTGTTGAGCCAAGGTTTTCAATTCCTATATCCCATAGCGTGAGCGTATCTGTGCTTGTGAGACGAAAGGATTCCAATAAAGTTGCTCGGATAGTCAATAAATCTCTATTTGATTATATTGATAGAACGTCATACAGGGCATTGGCATTTGACTACCTTGATTTTTCACCTCTCCACCCGTTTGTCTCGGGAATCCGAGCATGGATCTCATTGCTTTTCATGGACGATGGAAATGATGGTGTAATTGATGTATTTGGAATAGTAATGGATTTCTGTGATGCTGCAAACACAAAGGATGAGGTATTATGGCTTCTGGACTTGCTTGATTGGAAATGA

mRNA sequence

ATGACATGGGAAGAAGTTTTGAAGGTGATTTTCCCTTTGCTGGAAGGTGTGGACCTTGCTTCCTGCATGGCAGTGTGCAAGCAGTGGAGAGACATTGCGCGAGATGATTACTTCTGGAAATGCTTGTGTGCCAAGAGATGGCCTTCAACCTGCAAAACGCCCAATCCTCCAACAGATACCTACTACAAACTATATCGAAATTTTTACAAACGCCCCAATAATCGGTGTCTTCTCCCTCCTCGACTTTCCTTTGATGATTTAGAGTTTTTTATCGACATTTGGAGTGAAAACAGATTAATCTTCTCAGAAGTGGTTTCAGGTCAAGTCCTCCAGAATGGTATGAAGAAGCCACCACCTGGTACTAGTAATGTGCTTAGTTATCACCTCGAAGTCCCTGAGTTCAAAATGACACTCCCTGTTGAGCCAAGGTTTTCAATTCCTATATCCCATAGCGTGAGCGTATCTGTGCTTGTGAGACGAAAGGATTCCAATAAAGTTGCTCGGATAGTCAATAAATCTCTATTTGATTATATTGATAGAACGTCATACAGGGCATTGGCATTTGACTACCTTGATTTTTCACCTCTCCACCCGTTTGTCTCGGGAATCCGAGCATGGATCTCATTGCTTTTCATGGACGATGGAAATGATGGTGTAATTGATGTATTTGGAATAGTAATGGATTTCTGTGATGCTGCAAACACAAAGGATGAGGTATTATGGCTTCTGGACTTGCTTGATTGGAAATGA

Coding sequence (CDS)

ATGACATGGGAAGAAGTTTTGAAGGTGATTTTCCCTTTGCTGGAAGGTGTGGACCTTGCTTCCTGCATGGCAGTGTGCAAGCAGTGGAGAGACATTGCGCGAGATGATTACTTCTGGAAATGCTTGTGTGCCAAGAGATGGCCTTCAACCTGCAAAACGCCCAATCCTCCAACAGATACCTACTACAAACTATATCGAAATTTTTACAAACGCCCCAATAATCGGTGTCTTCTCCCTCCTCGACTTTCCTTTGATGATTTAGAGTTTTTTATCGACATTTGGAGTGAAAACAGATTAATCTTCTCAGAAGTGGTTTCAGGTCAAGTCCTCCAGAATGGTATGAAGAAGCCACCACCTGGTACTAGTAATGTGCTTAGTTATCACCTCGAAGTCCCTGAGTTCAAAATGACACTCCCTGTTGAGCCAAGGTTTTCAATTCCTATATCCCATAGCGTGAGCGTATCTGTGCTTGTGAGACGAAAGGATTCCAATAAAGTTGCTCGGATAGTCAATAAATCTCTATTTGATTATATTGATAGAACGTCATACAGGGCATTGGCATTTGACTACCTTGATTTTTCACCTCTCCACCCGTTTGTCTCGGGAATCCGAGCATGGATCTCATTGCTTTTCATGGACGATGGAAATGATGGTGTAATTGATGTATTTGGAATAGTAATGGATTTCTGTGATGCTGCAAACACAAAGGATGAGGTATTATGGCTTCTGGACTTGCTTGATTGGAAATGA

Protein sequence

MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDTYYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPGTSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDRTSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVLWLLDLLDWK

Homology

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BLAST of Cla002300 vs. Swiss-Prot
Match: FB270_ARATH (F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 4.5e-100
Identity = 171/249 (68.67%), Postives = 205/249 (82.33%), Query Frame = 1


Query: 4   EEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDTYYK 63
           EEVLK +FPLLEG DLASCM VCKQWRDIARDD++WKC CAK+WPS CK   PPT+TYYK
Sbjct: 4   EEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYK 63

Query: 64  LYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPGTSN 123
           +Y+ F KR  NR L PPRLSF++LEFFIDIWSE RL+FS ++ G  L+NG++  P G SN
Sbjct: 64  MYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISN 123

Query: 124 VLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDRTSY 183
           VL  HL  P++KM +P EPRF+IP++ SVSVSVLV R DS+KVARI+N+S+FDYIDR+SY
Sbjct: 124 VLRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSY 183

Query: 184 RALAFDYLDFSPLHPFVSGIRAWISLLFM---DDGNDGVIDVFGIVMDFCDAANTKDEVL 243
           RALAF+YLD SP +PF+SGIRAWISLLFM   D  +DG++DVFGI +DF D A+TK+EVL
Sbjct: 184 RALAFEYLDLSPCYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVL 243

Query: 244 WLLDLLDWK 250
           WLLD+LDWK
Sbjct: 244 WLLDMLDWK 252

[Close]

BLAST of Cla002300 vs. TrEMBL
Match: A0A0A0L6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.1e-132
Identity = 226/249 (90.76%), Postives = 237/249 (95.18%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           MTWEE+LKVIFPLLEGVDLASCMAVCKQWRDIA+DDYFWKCLCAK+WPSTCKT +PPTDT
Sbjct: 1   MTWEEILKVIFPLLEGVDLASCMAVCKQWRDIAQDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           YYKLYRNFYKRPNNR LLPPRLSFDDLEFFIDIWSE+RLIFSEVVSG + QNGMK PPP 
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVSGGIFQNGMKNPPPS 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
           T N+LSYHLEVPEFKMTL VEPRFSIPIS++VS SVLV RKDSNKVARIVNKS+FDYIDR
Sbjct: 121 TGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           TSYRALAFDYLDFSP HPFVSGIRAWISLLFMDDG+DG IDVFGIVMDFCDAANTKDEVL
Sbjct: 181 TSYRALAFDYLDFSPFHPFVSGIRAWISLLFMDDGDDGAIDVFGIVMDFCDAANTKDEVL 240

Query: 241 WLLDLLDWK 250
           WLLDLLDWK
Sbjct: 241 WLLDLLDWK 249

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BLAST of Cla002300 vs. TrEMBL
Match: B9SJD7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525640 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 2.3e-111
Identity = 188/249 (75.50%), Postives = 219/249 (87.95%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           M+++EVLK +FPLL+GVDLASCM V KQWRD ARDDYFWKCLCAKRWPS CK PNPPT T
Sbjct: 1   MSYDEVLKAVFPLLDGVDLASCMVVSKQWRDTARDDYFWKCLCAKRWPSICKRPNPPTVT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           Y KLY+ FYKR N + LLPPRLSFDDLEFFIDIWSE +LIFSEVV G VL  G+K PPPG
Sbjct: 61  YCKLYQTFYKRQNRQTLLPPRLSFDDLEFFIDIWSEEKLIFSEVVPGPVLLGGIKVPPPG 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
             ++L +HLE P++KMTLPVEPR  IP+S +VSVSVLV RKD+NKVAR++N+S+FDYIDR
Sbjct: 121 ICDILRFHLEGPDYKMTLPVEPRVKIPLSQTVSVSVLVGRKDTNKVARVINRSVFDYIDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           T+YR++AF+YLDFSP HPFV GIRAWISLLFM+DGN+GVIDVFGI MDF DAAN+++EVL
Sbjct: 181 TAYRSMAFEYLDFSPAHPFVPGIRAWISLLFMEDGNEGVIDVFGIEMDFRDAANSREEVL 240

Query: 241 WLLDLLDWK 250
           WLLD+LDWK
Sbjct: 241 WLLDMLDWK 249

[Close]

BLAST of Cla002300 vs. TrEMBL
Match: W9QIP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021013 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 3.3e-110
Identity = 182/249 (73.09%), Postives = 220/249 (88.35%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           M+ EEVLK +FPLLEGV+LASCMAVCKQWRD+A DDYFWKCLCAKRWPS CK P PPT T
Sbjct: 1   MSNEEVLKAVFPLLEGVELASCMAVCKQWRDVALDDYFWKCLCAKRWPSICKKPKPPTVT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           YYKLY+ FYKR  +R L PPR+SFDDL+F+IDIW+E+RL+FSEVV G +LQ G K PP G
Sbjct: 61  YYKLYQTFYKRQQSRILPPPRISFDDLDFYIDIWTEDRLLFSEVVPGPILQAGFKIPPSG 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
             + L +H++ PE+KMTLP+EPRF++P+S +VSVSVLV RKDSN VA ++NKS+FDY+DR
Sbjct: 121 ICDKLRFHIDGPEYKMTLPIEPRFTVPVSQTVSVSVLVERKDSNMVACVINKSVFDYVDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           ++YRA+AFD+LDFSP++PFVSGIRAWISLLFMDDG++GV DVFGI MDFCDAAN+K+EVL
Sbjct: 181 SAYRAMAFDFLDFSPVYPFVSGIRAWISLLFMDDGSEGVFDVFGIQMDFCDAANSKEEVL 240

Query: 241 WLLDLLDWK 250
           WLLD+LDWK
Sbjct: 241 WLLDMLDWK 249

[Close]

BLAST of Cla002300 vs. TrEMBL
Match: M5X692_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010438mg PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 9.7e-110
Identity = 187/249 (75.10%), Postives = 217/249 (87.15%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           MT+EEVLK +FPLLEGVDLASCM V KQWR IARDD+FWKC CAKRWPS CK PNPPT T
Sbjct: 1   MTYEEVLKAVFPLLEGVDLASCMVVSKQWRHIARDDFFWKCACAKRWPSICKRPNPPTLT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           YYKLY+ FYKR   R LLPPRLSFDDLEFFIDIW+E+R IFSEVV G +LQNG+K PPPG
Sbjct: 61  YYKLYQTFYKRRPGRILLPPRLSFDDLEFFIDIWTEDRFIFSEVVPGPILQNGIKIPPPG 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
             ++L  H+E  E+KM +PVEPRF++P+S +V+VSVLV RKDSNKVA I+NKS+FDYIDR
Sbjct: 121 VCDMLRLHMESSEYKMKVPVEPRFTVPLSQTVNVSVLVGRKDSNKVACILNKSMFDYIDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           T+YRA+A DYLDFSP++PF +GIRAWISLLFMD GN+GV+DVFGI MDF DAAN+K+EVL
Sbjct: 181 TAYRAMANDYLDFSPVYPFTTGIRAWISLLFMDSGNEGVVDVFGIEMDFMDAANSKEEVL 240

Query: 241 WLLDLLDWK 250
           WLLD+LDWK
Sbjct: 241 WLLDMLDWK 249

[Close]

BLAST of Cla002300 vs. TrEMBL
Match: A0A061EG72_THECC (F-box protein OS=Theobroma cacao GN=TCM_018725 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.3e-109
Identity = 187/240 (77.92%), Postives = 216/240 (90.00%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           M+ EEVLKV+FPLL+G+DLA+CM VCKQWRDIARDDYFW+C+CAKRWPS CK PNPPT T
Sbjct: 1   MSCEEVLKVVFPLLDGIDLAACMVVCKQWRDIARDDYFWRCVCAKRWPSICKRPNPPTVT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           YYKLY+ FYKR + R LLPPRLSFDDLEFFIDIW+E++LIFSEVV G VLQ G+K PP G
Sbjct: 61  YYKLYQTFYKRQHKRTLLPPRLSFDDLEFFIDIWTEDKLIFSEVVPGPVLQTGIKIPPTG 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
             ++L +HLE PE+KMTLPVEPRF++P S +VSVSVLV RKDSNKVA I+NKSLFDYIDR
Sbjct: 121 ICDMLKFHLEGPEYKMTLPVEPRFTVPWSQTVSVSVLVERKDSNKVACIINKSLFDYIDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           T+YRALAFDYLDFSP +PF+SGIRAWISLLFM+DGNDGVIDVFGI MDFCDAAN+K+E++
Sbjct: 181 TAYRALAFDYLDFSPNYPFISGIRAWISLLFMEDGNDGVIDVFGIEMDFCDAANSKEELV 240

[Close]

BLAST of Cla002300 vs. NCBI nr
Match: gi|659095831|ref|XP_008448789.1| (PREDICTED: F-box protein At5g39250 [Cucumis melo])

HSP 1 Score: 495.4 bits (1274), Expect = 6.0e-137
Identity = 234/249 (93.98%), Postives = 242/249 (97.19%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAK+WPSTCKT +PPTDT
Sbjct: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           YYKLYRNFYKRPNNR LLPPRLSFDDLEFFIDIWSE+RLIFSE VSG++LQNGMK PPPG
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEAVSGRILQNGMKSPPPG 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
           TSNVLSYHLEVPEFKMTLPVEPRFSIPIS++VS SVLV RKDSNKVARIVNKS+FDYIDR
Sbjct: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISNAVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDG IDVFGIVMDFCDAANTKDEVL
Sbjct: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGAIDVFGIVMDFCDAANTKDEVL 240

Query: 241 WLLDLLDWK 250
           WLLDLLDWK
Sbjct: 241 WLLDLLDWK 249

[Close]

BLAST of Cla002300 vs. NCBI nr
Match: gi|449458996|ref|XP_004147232.1| (PREDICTED: F-box protein At5g39250 [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 1.5e-132
Identity = 226/249 (90.76%), Postives = 237/249 (95.18%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           MTWEE+LKVIFPLLEGVDLASCMAVCKQWRDIA+DDYFWKCLCAK+WPSTCKT +PPTDT
Sbjct: 1   MTWEEILKVIFPLLEGVDLASCMAVCKQWRDIAQDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           YYKLYRNFYKRPNNR LLPPRLSFDDLEFFIDIWSE+RLIFSEVVSG + QNGMK PPP 
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVSGGIFQNGMKNPPPS 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
           T N+LSYHLEVPEFKMTL VEPRFSIPIS++VS SVLV RKDSNKVARIVNKS+FDYIDR
Sbjct: 121 TGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           TSYRALAFDYLDFSP HPFVSGIRAWISLLFMDDG+DG IDVFGIVMDFCDAANTKDEVL
Sbjct: 181 TSYRALAFDYLDFSPFHPFVSGIRAWISLLFMDDGDDGAIDVFGIVMDFCDAANTKDEVL 240

Query: 241 WLLDLLDWK 250
           WLLDLLDWK
Sbjct: 241 WLLDLLDWK 249

[Close]

BLAST of Cla002300 vs. NCBI nr
Match: gi|255570292|ref|XP_002526106.1| (PREDICTED: F-box protein At5g39250 [Ricinus communis])

HSP 1 Score: 409.8 bits (1052), Expect = 3.3e-111
Identity = 188/249 (75.50%), Postives = 219/249 (87.95%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           M+++EVLK +FPLL+GVDLASCM V KQWRD ARDDYFWKCLCAKRWPS CK PNPPT T
Sbjct: 1   MSYDEVLKAVFPLLDGVDLASCMVVSKQWRDTARDDYFWKCLCAKRWPSICKRPNPPTVT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           Y KLY+ FYKR N + LLPPRLSFDDLEFFIDIWSE +LIFSEVV G VL  G+K PPPG
Sbjct: 61  YCKLYQTFYKRQNRQTLLPPRLSFDDLEFFIDIWSEEKLIFSEVVPGPVLLGGIKVPPPG 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
             ++L +HLE P++KMTLPVEPR  IP+S +VSVSVLV RKD+NKVAR++N+S+FDYIDR
Sbjct: 121 ICDILRFHLEGPDYKMTLPVEPRVKIPLSQTVSVSVLVGRKDTNKVARVINRSVFDYIDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           T+YR++AF+YLDFSP HPFV GIRAWISLLFM+DGN+GVIDVFGI MDF DAAN+++EVL
Sbjct: 181 TAYRSMAFEYLDFSPAHPFVPGIRAWISLLFMEDGNEGVIDVFGIEMDFRDAANSREEVL 240

Query: 241 WLLDLLDWK 250
           WLLD+LDWK
Sbjct: 241 WLLDMLDWK 249

[Close]

BLAST of Cla002300 vs. NCBI nr
Match: gi|1009125874|ref|XP_015879848.1| (PREDICTED: F-box protein At5g39250 [Ziziphus jujuba])

HSP 1 Score: 407.9 bits (1047), Expect = 1.3e-110
Identity = 189/249 (75.90%), Postives = 220/249 (88.35%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           M  EEVLK +FPLLEGVDLASCMAV KQWR +A+DDY WKCLCAKRWPS CK PNPPT T
Sbjct: 1   MICEEVLKAVFPLLEGVDLASCMAVSKQWRSLAQDDYLWKCLCAKRWPSICKRPNPPTVT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           YYKLY+ FYKR + R LLPPRLSFDDLEFFID+W+E+RLIFSEVV G VLQ G+K PP G
Sbjct: 61  YYKLYQTFYKRQHCRTLLPPRLSFDDLEFFIDVWTEDRLIFSEVVPGPVLQTGIKIPPAG 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
             ++L +HLE PE+KMTLPVEPRF +P+S +VSVSVLV RKD+NKVA I+NKS+FDYIDR
Sbjct: 121 ICDMLRFHLEGPEYKMTLPVEPRFKVPLSQTVSVSVLVGRKDTNKVACIINKSMFDYIDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           T++RALAFDYLDFSP++ F+SGIRAWISLLFM+DG++ VIDVFGI MDFCDAAN+K+EVL
Sbjct: 181 TAFRALAFDYLDFSPIYYFISGIRAWISLLFMEDGSESVIDVFGIEMDFCDAANSKEEVL 240

Query: 241 WLLDLLDWK 250
           WLLD+LDW+
Sbjct: 241 WLLDMLDWR 249

[Close]

BLAST of Cla002300 vs. NCBI nr
Match: gi|703073724|ref|XP_010089620.1| (hypothetical protein L484_021013 [Morus notabilis])

HSP 1 Score: 406.0 bits (1042), Expect = 4.8e-110
Identity = 182/249 (73.09%), Postives = 220/249 (88.35%), Query Frame = 1


Query: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKRWPSTCKTPNPPTDT 60
           M+ EEVLK +FPLLEGV+LASCMAVCKQWRD+A DDYFWKCLCAKRWPS CK P PPT T
Sbjct: 1   MSNEEVLKAVFPLLEGVELASCMAVCKQWRDVALDDYFWKCLCAKRWPSICKKPKPPTVT 60

Query: 61  YYKLYRNFYKRPNNRCLLPPRLSFDDLEFFIDIWSENRLIFSEVVSGQVLQNGMKKPPPG 120
           YYKLY+ FYKR  +R L PPR+SFDDL+F+IDIW+E+RL+FSEVV G +LQ G K PP G
Sbjct: 61  YYKLYQTFYKRQQSRILPPPRISFDDLDFYIDIWTEDRLLFSEVVPGPILQAGFKIPPSG 120

Query: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVRRKDSNKVARIVNKSLFDYIDR 180
             + L +H++ PE+KMTLP+EPRF++P+S +VSVSVLV RKDSN VA ++NKS+FDY+DR
Sbjct: 121 ICDKLRFHIDGPEYKMTLPIEPRFTVPVSQTVSVSVLVERKDSNMVACVINKSVFDYVDR 180

Query: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240
           ++YRA+AFD+LDFSP++PFVSGIRAWISLLFMDDG++GV DVFGI MDFCDAAN+K+EVL
Sbjct: 181 SAYRAMAFDFLDFSPVYPFVSGIRAWISLLFMDDGSEGVFDVFGIQMDFCDAANSKEEVL 240

Query: 241 WLLDLLDWK 250
           WLLD+LDWK
Sbjct: 241 WLLDMLDWK 249

The following BLAST results are available for this feature:

BLAST of Cla002300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB270_ARATH	4.5e-100	68.67	F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1	[more]

BLAST of Cla002300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6S1_CUCSA	1.1e-132	90.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1	[more]
B9SJD7_RICCO	2.3e-111	75.50	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525640 PE=4 SV=1	[more]
W9QIP2_9ROSA	3.3e-110	73.09	Uncharacterized protein OS=Morus notabilis GN=L484_021013 PE=4 SV=1	[more]
M5X692_PRUPE	9.7e-110	75.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010438mg PE=4 SV=1	[more]
A0A061EG72_THECC	1.3e-109	77.92	F-box protein OS=Theobroma cacao GN=TCM_018725 PE=4 SV=1	[more]

BLAST of Cla002300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095831\|ref\|XP_008448789.1\|	6.0e-137	93.98	PREDICTED: F-box protein At5g39250 [Cucumis melo]	[more]
gi\|449458996\|ref\|XP_004147232.1\|	1.5e-132	90.76	PREDICTED: F-box protein At5g39250 [Cucumis sativus]	[more]
gi\|255570292\|ref\|XP_002526106.1\|	3.3e-111	75.50	PREDICTED: F-box protein At5g39250 [Ricinus communis]	[more]
gi\|1009125874\|ref\|XP_015879848.1\|	1.3e-110	75.90	PREDICTED: F-box protein At5g39250 [Ziziphus jujuba]	[more]
gi\|703073724\|ref\|XP_010089620.1\|	4.8e-110	73.09	hypothetical protein L484_021013 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU17405	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU62049	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002300	Cla002300.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU17405	WMU17405	transcribed_cluster
WMU62049	WMU62049	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 5..43 score: 3.2
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 1..42 score: 8
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 5..81 score: 9.35
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 5..74 score: 4.2
None	No IPR available	PANTHER	PTHR20995	FAMILY NOT NAMED	coord: 4..249 score: 7.3E
None	No IPR available	PANTHER	PTHR20995:SF15	SUBFAMILY NOT NAMED	coord: 4..249 score: 7.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002300	ClCG07G007400	Watermelon (Charleston Gray)	wcgwmB381
Cla002300	Lsi07G010060	Bottle gourd (USVL1VR-Ls)	lsiwmB437

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002300	Watermelon (97103) v2	wmwmbB171