Cla002114 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002114
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Zinc finger family protein (AHRD V1 -- D7MD22_ARALL); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type
Location	Chr2 : 15080044 .. 15080559 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCCTCTGTTTCCTTTCAACGTTTTCCCTCCCACTTCTCCTTCCCATTTAACTCCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACCACTTCCGGCAACCCCAAGCACCGGAAGAAAGCGGAGCCTACCGCTTCCAACAACATCACTCCGCCCTGTTCAGAGTGCGGCAAGCAATTCTGGTCATGGAAGGCTCTCTTCGGTCACATGCGTTGCCATCCTGAGCGTCAATGGCGAGGAATAAATCCACCCCCTAATTTCCTTCGCCCTTCCGTGGCCGCCACTCAATTACAACAAGATCACGAGATCGCTGCCTCTTTGATCATGCTCGCCAATGCTCCGTCAGATGGCGGTCGGGTAACGGCTGAGGATTACAAACGAAAGCCATATTCTGGAATTTTGGACTTGAACTTGCCTCCTTCTCCAATGGAGGAGATTGAACAAGAATCTTCATCTTCTTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA

mRNA sequence

ATGGATTCTCCTCTGTTTCCTTTCAACGTTTTCCCTCCCACTTCTCCTTCCCATTTAACTCCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACCACTTCCGGCAACCCCAAGCACCGGAAGAAAGCGGAGCCTACCGCTTCCAACAACATCACTCCGCCCTGTTCAGAGTGCGGCAAGCAATTCTGGTCATGGAAGGCTCTCTTCGGTCACATGCGTTGCCATCCTGAGCGTCAATGGCGAGGAATAAATCCACCCCCTAATTTCCTTCGCCCTTCCGTGGCCGCCACTCAATTACAACAAGATCACGAGATCGCTGCCTCTTTGATCATGCTCGCCAATGCTCCGTCAGATGGCGGTCGGGTAACGGCTGAGGATTACAAACGAAAGCCATATTCTGGAATTTTGGACTTGAACTTGCCTCCTTCTCCAATGGAGGAGATTGAACAAGAATCTTCATCTTCTTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA

Coding sequence (CDS)

ATGGATTCTCCTCTGTTTCCTTTCAACGTTTTCCCTCCCACTTCTCCTTCCCATTTAACTCCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACCACTTCCGGCAACCCCAAGCACCGGAAGAAAGCGGAGCCTACCGCTTCCAACAACATCACTCCGCCCTGTTCAGAGTGCGGCAAGCAATTCTGGTCATGGAAGGCTCTCTTCGGTCACATGCGTTGCCATCCTGAGCGTCAATGGCGAGGAATAAATCCACCCCCTAATTTCCTTCGCCCTTCCGTGGCCGCCACTCAATTACAACAAGATCACGAGATCGCTGCCTCTTTGATCATGCTCGCCAATGCTCCGTCAGATGGCGGTCGGGTAACGGCTGAGGATTACAAACGAAAGCCATATTCTGGAATTTTGGACTTGAACTTGCCTCCTTCTCCAATGGAGGAGATTGAACAAGAATCTTCATCTTCTTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA

Protein sequence

MDSPLFPFNVFPPTSPSHLTPNPRRKRTKFIKTTTSGNPKHRKKAEPTASNNITPPCSECGKQFWSWKALFGHMRCHPERQWRGINPPPNFLRPSVAATQLQQDHEIAASLIMLANAPSDGGRVTAEDYKRKPYSGILDLNLPPSPMEEIEQESSSSYSSGIVLDLRLGLN

Homology

[Close]

BLAST of Cla002114 vs. Swiss-Prot
Match: ZAT3_ARATH (Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-27
Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = 1


Query: 4   PLFPFNVFPPTS------PSHLTPNPRRKRTKFIKTTTSGNPK------HRKKAEPTASN 63
           PL P N   P         S    +P++KRTK + +++S +PK      + KK +P A  
Sbjct: 15  PLHPSNTSNPNPNLQFALSSSYDHSPKKKRTKTVASSSSSSPKSASKPKYTKKPDPNAPK 74

Query: 64  NITPPCSECGKQFWSWKALFGHMRCHPERQWRGINPPPNFLRPSVAATQ----------- 117
            IT PC+ECG++FWSWKALFGHMRCHPERQWRGINPPPN+  P+ A+++           
Sbjct: 75  -ITRPCTECGRKFWSWKALFGHMRCHPERQWRGINPPPNYRVPTAASSKQLNQILPNWVS 134

HSP 2 Score: 41.6 bits (96), Expect = 1.0e-02
Identity = 42/138 (30.43%), Postives = 55/138 (39.86%), Query Frame = 1


Query: 47  PTASNNITPPCSECGKQFWSWKALFGHMRCHPERQWRGINPPPNFLR-PSVAATQLQQDH 106
           P++S+     C  C K F S +AL GH   H  +  +G     N    P   +T    DH
Sbjct: 154 PSSSSIERFECGGCKKVFGSHQALGGHRASH--KNVKGCFAITNVTDDPMTVSTSSGHDH 213

Query: 107 E-------------IAASLIMLANAPSDGGRVTAEDYKRKPYSGILDLNLPPSPMEEIEQ 166
           +             I   +     A     R   E  +    SG LDLN+PP+      Q
Sbjct: 214 QGKILTFSGHHKCNICFRVFSSGQALGGHMRCHWEKEEEPMISGALDLNVPPTI-----Q 273

Query: 167 ESSSSYSSGIVLDLRLGL 171
           + S+S +SG  LDLRLGL
Sbjct: 274 DLSTSDTSGCCLDLRLGL 284

[Close]

BLAST of Cla002114 vs. Swiss-Prot
Match: ZAT2_ARATH (Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-22
Identity = 61/123 (49.59%), Postives = 73/123 (59.35%), Query Frame = 1


Query: 7   PFNVFPPTSPSHLTPNPRRKRTKFIK-----TTTSGNPKHRKKAEPTASNNITPPCSECG 66
           PF     T PS+   NPRRKRTK        +++S  PK   + +P AS  I  PC+ECG
Sbjct: 14  PFASSNVTLPSY-NQNPRRKRTKLTNNEVGSSSSSPRPKPVTQPDPDASQ-IARPCTECG 73

Query: 67  KQFWSWKALFGHMRCHPERQWRGINPPPNFLR--------PSVAATQLQQDHEIAASLIM 117
           KQF S KALFGHMRCHPERQWRGINPP NF R         S +    +++H IA+ L+M
Sbjct: 74  KQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSWDPSEEEHNIASCLLM 133

[Close]

BLAST of Cla002114 vs. TrEMBL
Match: A0A0A0KAW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118360 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-51
Identity = 119/179 (66.48%), Postives = 128/179 (71.51%), Query Frame = 1


Query: 1   MDSPLFPFNVFPPTSPSHLTPNPRRKRTKFIKTTTSGNPKHRKKAEPTASNNITPPCSEC 60
           MD PLF FN       S  T N RRK TKFIKTTT  N      A P   +NITPPCSEC
Sbjct: 1   MDLPLFSFNA----QRSSTTTNSRRKPTKFIKTTTLNNAS----ATP---HNITPPCSEC 60

Query: 61  GKQFWSWKALFGHMRCHPERQWRGINPPPNFLRPSVAATQLQQDHEIAASLIMLANAPSD 120
           GK+F SWKALFGHMRCHPERQWRGINPPP FL P  AA   Q DHEIA SLIML+NAP D
Sbjct: 61  GKKFCSWKALFGHMRCHPERQWRGINPPPIFLHPPSAA---QLDHEIATSLIMLSNAPPD 120

Query: 121 GGRVTAE--------DYKRKPYSGILDLNLPPSPMEEIEQESSSSYSSGIVLDLRLGLN 172
            GR T+E        ++K + +SG+LDLNLPP PMEEIEQESSS YSSGIVLDLRLGLN
Sbjct: 121 PGRGTSEGREAVVVCEHKPRAHSGLLDLNLPP-PMEEIEQESSSPYSSGIVLDLRLGLN 164

[Close]

BLAST of Cla002114 vs. TrEMBL
Match: A0A0D2Q9Q5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206600 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.6e-29
Identity = 66/111 (59.46%), Postives = 77/111 (69.37%), Query Frame = 1


Query: 21  PNPRRKRTKFIK----------TTTSGNPKHRKKAEPTASNNITPPCSECGKQFWSWKAL 80
           P PR+KRTK +K          +TT   PK+ KK +P A   IT PC+ECGK+FWSWKAL
Sbjct: 28  PKPRKKRTKVVKVDVGQFPTCSSTTVSRPKYTKKPDPAAPK-ITRPCTECGKKFWSWKAL 87

Query: 81  FGHMRCHPERQWRGINPPPNFLRP-----SVAATQLQQDHEIAASLIMLAN 117
           FGHMRCHPERQWRGINPPPN+ RP     +V     + DHEIAASL+MLAN
Sbjct: 88  FGHMRCHPERQWRGINPPPNYCRPVKPASNVETLMTEDDHEIAASLLMLAN 137

[Close]

BLAST of Cla002114 vs. TrEMBL
Match: A0A061DZD1_THECC (C2H2-like zinc finger protein, putative OS=Theobroma cacao GN=TCM_006454 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.8e-29
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 1


Query: 13  PTSPSHLT---PNPRRKRTKFIKTT---------TSGNPKHRKKAEPTASNNITPPCSEC 72
           P+S SH     PNPR+KR+K +K+          T   PK+ KK +P+A   IT PCSEC
Sbjct: 26  PSSSSHAVNYDPNPRKKRSKLMKSDAGQFPTSPRTVSRPKYTKKPDPSAPK-ITRPCSEC 85

Query: 73  GKQFWSWKALFGHMRCHPERQWRGINPPPNFLRP--------SVAATQLQQDHEIAASLI 120
           G++FWSWKALFGHMRCHPERQWRGINPPPN+ RP         V     ++DHE A +L+
Sbjct: 86  GRKFWSWKALFGHMRCHPERQWRGINPPPNYRRPVSPVKQTNKVEVLMTEEDHETAEALL 145

[Close]

BLAST of Cla002114 vs. TrEMBL
Match: A0A061DZD1_THECC (C2H2-like zinc finger protein, putative OS=Theobroma cacao GN=TCM_006454 PE=4 SV=1)

HSP 1 Score: 37.4 bits (85), Expect = 2.1e+01
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1


Query: 138 LDLNLPPSPMEEIEQESSSSYSSGIVLDLRLGL 171
           LDLNLP      +E + SSS+SSG+ LDLRLGL
Sbjct: 293 LDLNLPAP----VETDPSSSHSSGLALDLRLGL 321

HSP 2 Score: 130.2 bits (326), Expect = 2.4e-27
Identity = 71/130 (54.62%), Postives = 86/130 (66.15%), Query Frame = 1


Query: 13  PTSPSHLTPNPRRKRTKFIK-------TTTSGNPKHRKKAEPTASNNITPPCSECGKQFW 72
           PT+  H   NPR+KRTK IK       ++T   PK+ KK +P+A   IT PC+ECGK+FW
Sbjct: 21  PTTYYH--QNPRKKRTKLIKIEPSLLPSSTISKPKYYKKPDPSAPK-ITRPCTECGKKFW 80

Query: 73  SWKALFGHMRCHPERQWRGINPPPNFLRPSVAATQL--------------QQDHEIAASL 122
           SWKALFGHMRCHPERQWRGINPPPN+ RP V+  QL               +DHE+A+ L
Sbjct: 81  SWKALFGHMRCHPERQWRGINPPPNYRRP-VSPIQLLSIVSSTNWEDMLTAEDHEVASCL 140

[Close]

BLAST of Cla002114 vs. TrEMBL
Match: U5GMX5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s21520g PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-03
Identity = 44/135 (32.59%), Postives = 59/135 (43.70%), Query Frame = 1


Query: 36  SGNPKHRKKAEPTASNNITPPCSECGKQFWSWKALFGHMRCHPERQWRGINPPPNFLRPS 95
           SG+ K   +    A   +   CS C + F S +AL GH RCH E+               
Sbjct: 222 SGDVKENVEDNSKALMVLGHRCSICSRVFPSGQALGGHKRCHWEK--------------- 281

Query: 96  VAATQLQQDHEIAASLIMLANAPSDGGRVTAEDYKRKPYSGILDLNLPPSPMEEIEQESS 155
                     EI++S+       + GG     + +      +LDLNLP      +E ESS
Sbjct: 282 --------GEEISSSI-------NQGGLHVLTEKE----GSVLDLNLPAP----VEDESS 318

Query: 156 SSYSSGIVLDLRLGL 171
           S YSSG+ LDLRLGL
Sbjct: 342 SFYSSGLTLDLRLGL 318

HSP 2 Score: 129.8 bits (325), Expect = 3.2e-27
Identity = 62/112 (55.36%), Postives = 78/112 (69.64%), Query Frame = 1


Query: 22  NPRRKRTKFIKTTTSG---------NPKHRKKAEPTASNNITPPCSECGKQFWSWKALFG 81
           N ++KR+K +K  T+G          PK+ KK +P+A   ITPPCSECGK+FWSWKALFG
Sbjct: 30  NHKKKRSKSMKVDTTGFPNSSSPVSRPKYTKKPDPSAPK-ITPPCSECGKKFWSWKALFG 89

Query: 82  HMRCHPERQWRGINPPPNFLRP--------SVAATQLQQDHEIAASLIMLAN 117
           HMRCHPERQWRGINPPP + RP         + ++  ++DH IAASL+MLAN
Sbjct: 90  HMRCHPERQWRGINPPPKYRRPVSPVKEMNDIESSMTEEDHVIAASLLMLAN 140

[Close]

BLAST of Cla002114 vs. NCBI nr
Match: gi|449444596|ref|XP_004140060.1| (PREDICTED: zinc finger protein ZAT3 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-51
Identity = 119/179 (66.48%), Postives = 128/179 (71.51%), Query Frame = 1


Query: 1   MDSPLFPFNVFPPTSPSHLTPNPRRKRTKFIKTTTSGNPKHRKKAEPTASNNITPPCSEC 60
           MD PLF FN       S  T N RRK TKFIKTTT  N      A P   +NITPPCSEC
Sbjct: 1   MDLPLFSFNA----QRSSTTTNSRRKPTKFIKTTTLNNAS----ATP---HNITPPCSEC 60

Query: 61  GKQFWSWKALFGHMRCHPERQWRGINPPPNFLRPSVAATQLQQDHEIAASLIMLANAPSD 120
           GK+F SWKALFGHMRCHPERQWRGINPPP FL P  AA   Q DHEIA SLIML+NAP D
Sbjct: 61  GKKFCSWKALFGHMRCHPERQWRGINPPPIFLHPPSAA---QLDHEIATSLIMLSNAPPD 120

Query: 121 GGRVTAE--------DYKRKPYSGILDLNLPPSPMEEIEQESSSSYSSGIVLDLRLGLN 172
            GR T+E        ++K + +SG+LDLNLPP PMEEIEQESSS YSSGIVLDLRLGLN
Sbjct: 121 PGRGTSEGREAVVVCEHKPRAHSGLLDLNLPP-PMEEIEQESSSPYSSGIVLDLRLGLN 164

[Close]

BLAST of Cla002114 vs. NCBI nr
Match: gi|823135809|ref|XP_012467663.1| (PREDICTED: zinc finger protein ZAT3-like [Gossypium raimondii])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 66/111 (59.46%), Postives = 77/111 (69.37%), Query Frame = 1


Query: 21  PNPRRKRTKFIK----------TTTSGNPKHRKKAEPTASNNITPPCSECGKQFWSWKAL 80
           P PR+KRTK +K          +TT   PK+ KK +P A   IT PC+ECGK+FWSWKAL
Sbjct: 28  PKPRKKRTKVVKVDVGQFPTCSSTTVSRPKYTKKPDPAAPK-ITRPCTECGKKFWSWKAL 87

Query: 81  FGHMRCHPERQWRGINPPPNFLRP-----SVAATQLQQDHEIAASLIMLAN 117
           FGHMRCHPERQWRGINPPPN+ RP     +V     + DHEIAASL+MLAN
Sbjct: 88  FGHMRCHPERQWRGINPPPNYCRPVKPASNVETLMTEDDHEIAASLLMLAN 137

[Close]

BLAST of Cla002114 vs. NCBI nr
Match: gi|590683503|ref|XP_007041615.1| (C2H2-like zinc finger protein, putative [Theobroma cacao])

HSP 1 Score: 135.6 bits (340), Expect = 8.3e-29
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 1


Query: 13  PTSPSHLT---PNPRRKRTKFIKTT---------TSGNPKHRKKAEPTASNNITPPCSEC 72
           P+S SH     PNPR+KR+K +K+          T   PK+ KK +P+A   IT PCSEC
Sbjct: 26  PSSSSHAVNYDPNPRKKRSKLMKSDAGQFPTSPRTVSRPKYTKKPDPSAPK-ITRPCSEC 85

Query: 73  GKQFWSWKALFGHMRCHPERQWRGINPPPNFLRP--------SVAATQLQQDHEIAASLI 120
           G++FWSWKALFGHMRCHPERQWRGINPPPN+ RP         V     ++DHE A +L+
Sbjct: 86  GRKFWSWKALFGHMRCHPERQWRGINPPPNYRRPVSPVKQTNKVEVLMTEEDHETAEALL 145

[Close]

BLAST of Cla002114 vs. NCBI nr
Match: gi|590683503|ref|XP_007041615.1| (C2H2-like zinc finger protein, putative [Theobroma cacao])

HSP 1 Score: 37.4 bits (85), Expect = 3.1e+01
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1


Query: 138 LDLNLPPSPMEEIEQESSSSYSSGIVLDLRLGL 171
           LDLNLP      +E + SSS+SSG+ LDLRLGL
Sbjct: 293 LDLNLPAP----VETDPSSSHSSGLALDLRLGL 321

HSP 2 Score: 133.3 bits (334), Expect = 4.1e-28
Identity = 68/129 (52.71%), Postives = 84/129 (65.12%), Query Frame = 1


Query: 14  TSPSHLTPNPRRKRTKFIKTTTSGN-------PKHRKKAEPTASNNITPPCSECGKQFWS 73
           ++P+    NPRRKR+K I+  T+         PK+ KK +PTA   IT PCSECGK+FWS
Sbjct: 36  STPAKRHENPRRKRSKLIRLETAATSPIGISKPKYGKKPDPTAPK-ITRPCSECGKKFWS 95

Query: 74  WKALFGHMRCHPERQWRGINPPPNFLRPSVAATQL-----------------QQDHEIAA 119
           WKALFGHMRCHPERQWRGINPPPNF RP ++  +L                 + DHE+AA
Sbjct: 96  WKALFGHMRCHPERQWRGINPPPNFRRP-ISPIKLPSNSSEPPPRRPPLDLTEDDHEVAA 155

[Close]

BLAST of Cla002114 vs. NCBI nr
Match: gi|727543305|ref|XP_010444960.1| (PREDICTED: zinc finger protein ZAT3-like [Camelina sativa])

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 1


Query: 4   PLFPFNVFPPT-------SPSHLTPNPRRKRTKFIKTTTSGNPK---HRKKAEPTASNNI 63
           PL P N   P        SPS+   +P+RKRTK I +++S +PK   + KK +P A   I
Sbjct: 15  PLHPSNARNPNPNLQFALSPSY-DHSPKRKRTKTIASSSSSSPKKPRYTKKPDPNAPK-I 74

Query: 64  TPPCSECGKQFWSWKALFGHMRCHPERQWRGINPPPNFLRPSVAATQLQ----------- 117
           T PC+ECG+QFWSWKALFGHMRCHPERQWRGINPPPN+  P+ AA+  Q           
Sbjct: 75  TRPCTECGRQFWSWKALFGHMRCHPERQWRGINPPPNYRSPTTAASSKQLNQRSLDWVSF 134

The following BLAST results are available for this feature:

BLAST of Cla002114 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZAT3_ARATH	2.7e-27	44.93	Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=1 SV=1	[more]
ZAT2_ARATH	2.6e-22	49.59	Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=1 SV=1	[more]

BLAST of Cla002114 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAW8_CUCSA	1.1e-51	66.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118360 PE=4 SV=1	[more]
A0A0D2Q9Q5_GOSRA	2.6e-29	59.46	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206600 PE=4 SV=1	[more]
A0A061DZD1_THECC	5.8e-29	52.76	C2H2-like zinc finger protein, putative OS=Theobroma cacao GN=TCM_006454 PE=4 SV...	[more]
A0A061DZD1_THECC	2.1e+01	60.61	C2H2-like zinc finger protein, putative OS=Theobroma cacao GN=TCM_006454 PE=4 SV...	[more]
U5GMX5_POPTR	1.4e-03	32.59	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s21520g PE=4 SV=1	[more]

BLAST of Cla002114 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444596\|ref\|XP_004140060.1\|	1.6e-51	66.48	PREDICTED: zinc finger protein ZAT3 [Cucumis sativus]	[more]
gi\|823135809\|ref\|XP_012467663.1\|	3.7e-29	59.46	PREDICTED: zinc finger protein ZAT3-like [Gossypium raimondii]	[more]
gi\|590683503\|ref\|XP_007041615.1\|	8.3e-29	52.76	C2H2-like zinc finger protein, putative [Theobroma cacao]	[more]
gi\|590683503\|ref\|XP_007041615.1\|	3.1e+01	60.61	C2H2-like zinc finger protein, putative [Theobroma cacao]	[more]
gi\|727543305\|ref\|XP_010444960.1\|	2.0e-27	50.36	PREDICTED: zinc finger protein ZAT3-like [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002114	Cla002114.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PFAM	PF13912	zf-C2H2_6	coord: 57..79 score: 1.
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 57..77 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 55..82 score: 9
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain	GENE3D	G3DSA:3.30.160.60		coord: 57..77 score: 4.
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 55..117 score: 1.4
None	No IPR available	PANTHER	PTHR26374:SF186	SUBFAMILY NOT NAMED	coord: 55..117 score: 1.4
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 56..80 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002114	ClCG02G009940	Watermelon (Charleston Gray)	wcgwmB216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002114	Watermelon (97103) v1	wmwmB005