Cla000164.1 (mRNA) Watermelon (97103) v1

Overview
NameCla000164
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 4548011 .. 4548283 (-)
Sequence length273
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAGAGATTAGTAACTAGTATGGAAACAGTTCAGGGTGACCCTGAGAAAAAGTTTGGCATTGAGCGATTCAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATAA

mRNA sequence

ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAGAGATTAGTAACTAGTATGGAAACAGTTCAGGGTGACCCTGAGAAAAAGTTTGGCATTGAGCGATTCAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATAA

Coding sequence (CDS)

ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAGAGATTAGTAACTAGTATGGAAACAGTTCAGGGTGACCCTGAGAAAAAGTTTGGCATTGAGCGATTCAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATAA

Protein sequence

MPRGTRRGRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMETVQGDPEKKFGIERFKALGAQVFEGTTDPAEAEA
Homology
[Close]
BLAST of Cla000164 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 7.2e-16
Identity = 50/93 (53.76%), Postives = 61/93 (65.59%), Query Frame = 1 

Query: 1   MPRGTRRGRQEGAATSHATGEERQAS---EGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
           MPRG  R +   A TS+A  E    S   + ESS P    NMEEQL  R+AQRL++ + +
Sbjct: 20  MPRGRPR-KHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRS 79

Query: 61  VQGDPEKKFGIERFKALGAQVFEGTTDPAEAEA 91
            Q DPEKK+GIER KALGA  F GTT+PA+AEA
Sbjct: 80  AQSDPEKKYGIERLKALGATTFVGTTNPADAEA 111

[Close]
BLAST of Cla000164 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-12
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 1  MPRGTRRGRQEGAATSHA--TGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMETV 60
          MPRG  R R    A++ A     E +  + ESS P    N+EEQL  R+AQR V+ +++ 
Sbjct: 1  MPRGRPRKRPVAEASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKST 60

Query: 61 QGDPEKKFGIERFKALGAQVFEGTTDPAEAEA 91
          Q D EKKF IER KALG+  F  TT+PA AEA
Sbjct: 61 QSDLEKKFEIERLKALGSTTFARTTNPANAEA 92

[Close]
BLAST of Cla000164 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-10
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 1  MPRGTRRGRQEGAATSHATGE---ERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
          M RG ++ R +   T    G    E + SEGESS+ Q  M ++E+L ++I + + T M +
Sbjct: 1  MSRGGKKRRLKDLGTQQIPGGRDLENEESEGESSHQQGDMTVDEKLLNKITEGITTGMRS 60

Query: 61 VQGDPEKKFGIERFKALGAQVFEGTTDPAEAE 90
          +  + EK FGIER KALGA  F  TTDP + E
Sbjct: 61 LNNNLEKTFGIERLKALGATTFARTTDPTDGE 92

[Close]
BLAST of Cla000164 vs. NCBI nr
Match: gi|659095113|ref|XP_008448403.1| (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 38/88 (43.18%), Postives = 47/88 (53.41%), Query Frame = 1 

Query: 2  PRGTRRGRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMETVQGD 61
          PR +RR +Q    T   T  +   SE  SS P+       + F+R AQ +         D
Sbjct: 3  PRTSRRHKQNQDETQDPTQGQ---SERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSD 62

Query: 62 PEKKFGIERFKALGAQVFEGTTDPAEAE 90
          PEK +GIER K LGA VFEG+TDPA AE
Sbjct: 63 PEKMYGIERLKKLGATVFEGSTDPANAE 87

The following BLAST results are available for this feature:
BLAST of Cla000164 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|7.2e-1653.76PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|6.3e-1247.83PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|4.5e-1041.30PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659095113|ref|XP_008448403.1|1.6e-0743.18PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla000164Cla000164gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla000164Cla000164.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla000164.1.cds1Cla000164.1.cds1CDS