Cla016484 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016484
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pollen coat protein (AHRD V1 ***- Q39385_BRAOL)
Location	Chr11 : 21816722 .. 21817104 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAACTCCCAAAAGATGAGCTACCATGTAGGAGAAGCCAAGGGTCAAGCGCAGGTTTACATCACTATAAATTTAATAACATCATTACCATTTAATAATTTCATTCAATAAGTTTGTTTTATATCATTTTTTAATTGTTTGTCAATTAGTCGTACATTTTTATTGTCACTTCATATTACTTTTTGGTTCTTGTTGGAAAATATCTAATTTGGTGTGTTTTGTTAATTTGTGGTGTTATATAGGAGAAAGTGAGCAATATGATGGACAAGGCAAGCGATGTAGCTCAATCAGCTAAGGAATCAGTGCAGGAAGCAGGACAACAAATGAAGGCCAAAGCACAAGGAGCTGCTGATGCTGTCAAAGATGCAGTTAATAAATGA

mRNA sequence

ATGGATAACTCCCAAAAGATGAGCTACCATGTAGGAGAAGCCAAGGGTCAAGCGCAGGAGAAAGTGAGCAATATGATGGACAAGGCAAGCGATGTAGCTCAATCAGCTAAGGAATCAGTGCAGGAAGCAGGACAACAAATGAAGGCCAAAGCACAAGGAGCTGCTGATGCTGTCAAAGATGCAGTTAATAAATGA

Coding sequence (CDS)

ATGGATAACTCCCAAAAGATGAGCTACCATGTAGGAGAAGCCAAGGGTCAAGCGCAGGAGAAAGTGAGCAATATGATGGACAAGGCAAGCGATGTAGCTCAATCAGCTAAGGAATCAGTGCAGGAAGCAGGACAACAAATGAAGGCCAAAGCACAAGGAGCTGCTGATGCTGTCAAAGATGCAGTTAATAAATGA

Protein sequence

MDNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDAVNK

Homology

[Close]

BLAST of Cla016484 vs. Swiss-Prot
Match: LEA2_CICAR (Late embryogenesis abundant protein 2 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.8e-06
Identity = 25/57 (43.86%), Postives = 30/57 (52.63%), Query Frame = 1


Query: 4  SQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKD 61
          S   SY  GEAKG+ +EK + M+    D AQ+AKE  Q+A Q  K K    A A K+
Sbjct: 3  SHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKE 59

HSP 2 Score: 45.4 bits (106), Expect = 2.6e-04
Identity = 25/68 (36.76%), Postives = 32/68 (47.06%), Query Frame = 1


Query: 4  SQKMSYHVGEAKGQAQEKVSNMM-----------DKASDVAQSAKESVQEAGQQMKAKAQ 61
          S   SY  GEAKG+ +EK + M+           +KA   AQ+AK+   +  Q  K K Q
Sbjct: 3  SHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQ 62

HSP 3 Score: 42.4 bits (98), Expect = 2.2e-03
Identity = 26/79 (32.91%), Postives = 32/79 (40.51%), Query Frame = 1


Query: 4  SQKMSYHVGEAKGQAQEKVSNMM----------------------DKASDVAQSAKESVQ 61
          S   SY  GEAKG+ +EK + M+                      DK S  AQ+AKE  Q
Sbjct: 3  SHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQ 62

HSP 4 Score: 40.0 bits (92), Expect = 1.1e-02
Identity = 21/51 (41.18%), Postives = 29/51 (56.86%), Query Frame = 1


Query: 13  EAKGQAQEKVSNMMDKASDVAQSAKES----VQEAGQQMKAKAQGAADAVK 60
           +  G+A+EK S M     + AQS K++    +Q+ G++ K  AQGA DAVK
Sbjct: 85  DTTGRAKEKGSEMGQSTKETAQSGKDNSAGFLQQTGEKAKGMAQGATDAVK 135

HSP 5 Score: 33.1 bits (74), Expect = 1.4e+00
Identity = 26/90 (28.89%), Postives = 32/90 (35.56%), Query Frame = 1


Query: 4  SQKMSYHVGEAKGQAQEKVSNMM----------------------DKASDVAQSAKESVQ 61
          S   SY  GEAKG+ +EK + M+                      DK S  AQ+AKE  Q
Sbjct: 3  SHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQ 62

[Close]

BLAST of Cla016484 vs. TrEMBL
Match: A0A0A0KXN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.8e-23
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 2  DNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDA 61
          DNSQKMSYH GEAKGQ QEK+SNMMDKASD AQSAKESVQE GQQM AKAQGAADAVKDA
Sbjct: 3  DNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKDA 62

Query: 62 VNK 65
          VNK
Sbjct: 63 VNK 65

[Close]

BLAST of Cla016484 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-21
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 2  DNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDA 61
          DNS+KMSYH+GEAKGQAQEK SN+MDKA D AQSAKES+QEAGQQMKAKAQGAADAVKDA
Sbjct: 3  DNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVKDA 62

[Close]

BLAST of Cla016484 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-20
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 2  DNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDA 61
          DNSQ MSY +GEAKGQAQEK SNMM+KASD AQSAKES+QE GQQMKAKAQGAADAVKDA
Sbjct: 3  DNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVKDA 62

[Close]

BLAST of Cla016484 vs. TrEMBL
Match: B9T3S3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0447160 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-19
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 2  DNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDA 61
          DNSQKM+YH GEAKGQ QEK SNMMDKA +VAQSAKES+QEAG QMKAKAQGAADAVK+A
Sbjct: 3  DNSQKMAYHAGEAKGQTQEKASNMMDKAGNVAQSAKESMQEAGNQMKAKAQGAADAVKNA 62

[Close]

BLAST of Cla016484 vs. TrEMBL
Match: A0A0A0KSI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643240 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-18
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 2  DNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDA 61
          +NS KMS+  GEAKGQAQEK SN+MDKAS+ A+SAKES+QE GQQM AKAQGAADA KDA
Sbjct: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKDA 63

Query: 62 VNK 65
          VNK
Sbjct: 64 VNK 66

[Close]

BLAST of Cla016484 vs. NCBI nr
Match: gi|449447458|ref|XP_004141485.1| (PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 2  DNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDA 61
          DNSQKMSYH GEAKGQ QEK+SNMMDKASD AQSAKESVQE GQQM AKAQGAADAVKDA
Sbjct: 3  DNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKDA 62

Query: 62 VNK 65
          VNK
Sbjct: 63 VNK 65

[Close]

BLAST of Cla016484 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-22
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 2  DNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDA 61
          DNSQKMSYHVGEAKGQAQEK SNMMDKASD AQSAKES+QEAGQQMKAKAQGAADAVKDA
Sbjct: 3  DNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVKDA 62

[Close]

BLAST of Cla016484 vs. NCBI nr
Match: gi|659119052|ref|XP_008459449.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-22
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 1


Query: 1  MDNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKD 60
          MDNSQKMSYH GEAKGQ QEKVSNMMDKAS+ AQS KESVQEAGQQM AKAQGA DAVKD
Sbjct: 1  MDNSQKMSYHAGEAKGQTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQGATDAVKD 60

Query: 61 AVNK 65
          AVNK
Sbjct: 61 AVNK 64

[Close]

BLAST of Cla016484 vs. NCBI nr
Match: gi|449469357|ref|XP_004152387.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-21
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 2  DNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDA 61
          DNS+KMSYH+GEAKGQAQEK SN+MDKA D AQSAKES+QEAGQQMKAKAQGAADAVKDA
Sbjct: 3  DNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVKDA 62

[Close]

BLAST of Cla016484 vs. NCBI nr
Match: gi|1009127017|ref|XP_015880470.1| (PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba])

HSP 1 Score: 107.8 bits (268), Expect = 6.9e-21
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 2  DNSQKMSYHVGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDA 61
          DNSQKMSYH GEAKG+AQEK  NMMDKAS+ AQSAKESVQEAGQQMKAKAQGAADAVKDA
Sbjct: 3  DNSQKMSYHAGEAKGRAQEKAGNMMDKASNAAQSAKESVQEAGQQMKAKAQGAADAVKDA 62

The following BLAST results are available for this feature:

BLAST of Cla016484 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LEA2_CICAR	4.8e-06	43.86	Late embryogenesis abundant protein 2 OS=Cicer arietinum PE=2 SV=1	[more]

BLAST of Cla016484 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXN2_CUCSA	8.8e-23	90.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	2.2e-21	88.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
A0A0A0KPD4_CUCSA	2.4e-20	86.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
B9T3S3_RICCO	1.2e-19	85.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0447160 PE=4 SV=1	[more]
A0A0A0KSI8_CUCSA	1.0e-18	77.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643240 PE=4 SV=1	[more]

BLAST of Cla016484 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447458\|ref\|XP_004141485.1\|	1.3e-22	90.48	PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus]	[more]
gi\|659073373\|ref\|XP_008437025.1\|	1.6e-22	95.00	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659119052\|ref\|XP_008459449.1\|	1.6e-22	89.06	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449469357\|ref\|XP_004152387.1\|	3.1e-21	88.33	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|1009127017\|ref\|XP_015880470.1\|	6.9e-21	90.00	PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016484	Cla016484.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..61 score: 6.3
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 1..61 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016484	Wax gourd	wgowmB140
Cla016484	Cucumber (Gy14) v1	cgywmB447
Cla016484	Cucurbita maxima (Rimu)	cmawmB284
Cla016484	Cucurbita maxima (Rimu)	cmawmB736
Cla016484	Cucurbita moschata (Rifu)	cmowmB275
Cla016484	Cucurbita moschata (Rifu)	cmowmB730
Cla016484	Wild cucumber (PI 183967)	cpiwmB450
Cla016484	Wild cucumber (PI 183967)	cpiwmB453
Cla016484	Melon (DHL92) v3.5.1	mewmB038
Cla016484	Melon (DHL92) v3.5.1	mewmB039
Cla016484	Melon (DHL92) v3.5.1	mewmB076
Cla016484	Watermelon (Charleston Gray)	wcgwmB107
Cla016484	Cucumber (Chinese Long) v2	cuwmB439
Cla016484	Cucumber (Chinese Long) v2	cuwmB437
Cla016484	Cucurbita pepo (Zucchini)	cpewmB195
Cla016484	Cucurbita pepo (Zucchini)	cpewmB462
Cla016484	Bottle gourd (USVL1VR-Ls)	lsiwmB278
Cla016484	Cucumber (Gy14) v2	cgybwmB409
Cla016484	Melon (DHL92) v3.6.1	medwmB037
Cla016484	Melon (DHL92) v3.6.1	medwmB038
Cla016484	Melon (DHL92) v3.6.1	medwmB073
Cla016484	Silver-seed gourd	carwmB0025
Cla016484	Silver-seed gourd	carwmB0260
Cla016484	Cucumber (Chinese Long) v3	cucwmB462
Cla016484	Watermelon (97103) v2	wmwmbB361
Cla016484	Watermelon (97103) v2	wmwmbB373