Bhi01M000470 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M000470
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	RNA-binding family protein
Location	chr1 : 11965431 .. 11967568 (+)
Sequence length	843

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCACCGGAGCCTCCTTCTTCGCCACTCCCTTAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTTCTCGCAACCCCATCCACCCAAGTTTTGCCCATATTGTCCCGCTCTCAAGCCATTGAATCGGCTCCGCTAAGAGCTTTCTCGGAGAGGGGGCGGCCGGTTTTGATCATCTCGGCCGCCGTTGTGCAAGGAGAGACGGCTGTGACGGCGGGGGTTGAAGAGGGTGTGGAGGAGGATACGGCGGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCTGGGAGTACTAAGCTGTATTTTGGGAACCTGCCTTATAGTGTTGACAGTTCCCAGCTCGCCGCTATCGTTCAGGATTATGGAGTCGCCGAGCTTATTGAGGTACATTGCCTGCAAATGTCGCTGTTTAGTTTCCTGCAAATGTCATTGATTGGTTTCTTCATTGACTTCTAGTACATGATTTCACCTCTAAGCAACGACATTATATGAAAACTTTGCTTTGGAATCAAGCTCGCATGAGATATCTGGCAAATCACTATGAAGGGTGGGGGTATGAGAGCAACAGTTCCAATTCCTTTTGTACATTTGGTGCTTGATTCCCATATTAGACAAGCTCGCTATGGGCAACTAAGAGACCAACTATATGACTATAGATCTAGATGTTTTTTAAGTAATGACCTCAAATCTTAGTGTCACCTATCCATGATTCTGAGTTTTTGAGACGTTGTTGGTTTAGGAGATCGTGAAGTTGTATGGAATTGAGATGCATATTATTAGCTCAAACATCCACAGAAAACCCACATGCATGTTTAGGGGCATATAGGTTTGGTAGTTGGTGGCAACTGCATGTTGATCCAATGAGCTATTAATTTTTCTACCAAATTGCTGCAACACCATGAGACATTCAACTAGTGGGTTTCATGGAATGAAACCATTATAGAAGAGTATGATTATATTACTAGGGTGCTACAGTCGCAAGGCGGCATCCAATATATTATCCATTTGAGGAATGTGCCCTCTGTTTGTGCAACTTTGAGGGGTTGTTTGCATAAATAGCTGCTAACCTTGCTTTACCTTCATTACCACTATAATACAAGCTCAAAGCATTAACCTTGATTAGTTGTTCGGAATTCGAACCATGGTGATCATCCAACTTAGATTTATTATTCTACGAGTTTTTTAAGCAACTGAATATAGTAAAACAAGGTAGATGCTCTATGAGATTAGTTGTGGTGTGTGTAAATTGGATCTGCTGGATTAGACACTCATAGAAACTCCAGGTGCTTTATGAAAAGATCCAATGTAGCAATTTCATTTGTCAAATCCCGAAAACAGACTTCTTTACTAGCTGCATTCAATCTTTACTTTGAACTATTTCGCCAAGAGCATATTTTCACATCAAATCTCATATTTCTTAAAAGTCTCTAATCAATTCGAGTGGTATAAGGTTCTGTATGACAGGAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTAAAGATTGCAATAAAGTCATTGAAAATCTGGATGGAACTGTGAGAATCTCTCTCTTTCACACTTCATTCTCTCCTTTATGTTGATCTATACTTAGATTGCTTTAAGTTCAGAAATAATTGGAACTATTGGACTCTGATGCTAAATATGAGTATCACTTGCATAACCAGGCTTATATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCTAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAACTTTGACACAAGCATTTCAAGGATATGGAAATGTGGTAGGAGCAAGGGTTATTTACAATGGGGAGACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGTAAGAGTCTGTCTTGGTTCTCCTGTATCTTTTTGTCCACGTTGTAATTATATCATATAATATCAGGTAGTTCAATTATCTGGTTTTTTGAACTTCATAGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACAGGGGTAA

mRNA sequence

ATGGCCGCCGCCACCGGAGCCTCCTTCTTCGCCACTCCCTTAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTTCTCGCAACCCCATCCACCCAAGTTTTGCCCATATTGTCCCGCTCTCAAGCCATTGAATCGGCTCCGCTAAGAGCTTTCTCGGAGAGGGGGCGGCCGGTTTTGATCATCTCGGCCGCCGTTGTGCAAGGAGAGACGGCTGTGACGGCGGGGGTTGAAGAGGGTGTGGAGGAGGATACGGCGGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCTGGGAGTACTAAGCTGTATTTTGGGAACCTGCCTTATAGTGTTGACAGTTCCCAGCTCGCCGCTATCGTTCAGGATTATGGAGTCGCCGAGCTTATTGAGGTTCTGTATGACAGGAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTAAAGATTGCAATAAAGTCATTGAAAATCTGGATGGAACTGCTTATATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCTAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAACTTTGACACAAGCATTTCAAGGATATGGAAATGTGGTAGGAGCAAGGGTTATTTACAATGGGGAGACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACAGGGGTAA

Coding sequence (CDS)

ATGGCCGCCGCCACCGGAGCCTCCTTCTTCGCCACTCCCTTAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTTCTCGCAACCCCATCCACCCAAGTTTTGCCCATATTGTCCCGCTCTCAAGCCATTGAATCGGCTCCGCTAAGAGCTTTCTCGGAGAGGGGGCGGCCGGTTTTGATCATCTCGGCCGCCGTTGTGCAAGGAGAGACGGCTGTGACGGCGGGGGTTGAAGAGGGTGTGGAGGAGGATACGGCGGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCTGGGAGTACTAAGCTGTATTTTGGGAACCTGCCTTATAGTGTTGACAGTTCCCAGCTCGCCGCTATCGTTCAGGATTATGGAGTCGCCGAGCTTATTGAGGTTCTGTATGACAGGAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTAAAGATTGCAATAAAGTCATTGAAAATCTGGATGGAACTGCTTATATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCTAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAACTTTGACACAAGCATTTCAAGGATATGGAAATGTGGTAGGAGCAAGGGTTATTTACAATGGGGAGACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACAGGGGTAA

Protein sequence

MAAATGASFFATPLRGSRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPVLIISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG

Homology

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BLAST of Bhi01M000470 vs. TAIR10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 261.9 bits (668), Expect = 4.4e-70
Identity = 132/221 (59.73%), Postives = 178/221 (80.54%), Query Frame = 0


Query: 58  RPVLIISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSV 117
           +P+LI S +  +    ++  +   +EE+  + G    +D   P  + +TKLYFGNLPY+V
Sbjct: 40  KPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLD---PPAAVNTKLYFGNLPYNV 99

Query: 118 DSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRIL 177
           DS+ LA I+QD+   EL+EVLY+R+TG+SRGFAFVTMS+++DCN +I+NLDGT Y+GR L
Sbjct: 100 DSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRAL 159

Query: 178 RVNFSDKPKP-KEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGK 237
           +VNF+DKPKP KEPLYPETE+KLFVGNLSW+VTSE+L  AF+  G+VVGARV+++G+TG+
Sbjct: 160 KVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGR 219

Query: 238 SRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQ 278
           SRGYGFV YS+K+EMETALE+L+  ELEGR IRV+LA+GK+
Sbjct: 220 SRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257

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BLAST of Bhi01M000470 vs. TAIR10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-35
Identity = 94/263 (35.74%), Postives = 142/263 (53.99%), Query Frame = 0


Query: 17  SRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPVLIISAAVVQGETAVTA 76
           S   H  + SL + P    L + S++    S  +   S+         A   +GE     
Sbjct: 34  SSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSN-----WAEEEEGEDGSIG 93

Query: 77  GVEEGVEEDTAEKGGGEAVDG-GSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGVAELI 136
           G    V+E        E+ DG G P      KL+ GNLPY VDS  LA + +  G  E+ 
Sbjct: 94  GTSVTVDESF------ESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEIS 153

Query: 137 EVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNFS----DKPKPKEPL 196
           EV+Y+R+T +SRGF FVTMS++++  K +E  +     GR L VN +     +P+ ++P 
Sbjct: 154 EVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE-RQPR 213

Query: 197 YPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYGFVSYSTKSEM 256
             +  ++++VGNL W V S  L + F  +G VV ARV+ + ETG+SRG+GFV  S ++E+
Sbjct: 214 VYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEV 273

Query: 257 ETALEALNEVELEGRVIRVSLAE 275
             A+ AL+   LEGR I+V++AE
Sbjct: 274 NVAIAALDGQNLEGRAIKVNVAE 284

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BLAST of Bhi01M000470 vs. TAIR10
Match: AT4G24770.1 (31-kDa RNA binding protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-34
Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 100 PVESGSTKLYFGNLPYSVDSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKD 159
           P  S   KL+ GNL Y V+S  LA + +  G  E+ EV+Y+R T +SRGF FVTMSS+ +
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203

Query: 160 CNKVIENLDGTAYMGRILRVNFS----DKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQ 219
               +E  +     GR+L VN +     +P+ + P   E  ++++VGNL W V +  L Q
Sbjct: 204 AETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVYVGNLPWDVDNGRLEQ 263

Query: 220 AFQGYGNVVGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAE 275
            F  +G VV ARV+Y+ ETG+SRG+GFV+ S   E+  A+ AL+   LEGR IRV++AE
Sbjct: 264 LFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321

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BLAST of Bhi01M000470 vs. TAIR10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33)

HSP 1 Score: 142.9 bits (359), Expect = 3.0e-34
Identity = 68/183 (37.16%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 107 KLYFGNLPYSVDSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIEN 166
           +LY GNLPY++ SS+L+ I  + G    ++++YD+ T +SRGF FVTM SI++  + ++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 167 LDGTAYMGRILRVNFSDKPKPKE------------PLYPETEYKLFVGNLSWSVTSETLT 226
            + +   GR ++VNF + P+  E              Y ++ +K++ GNL W++TS+ L 
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 227 QAFQGYGNVVGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAE 278
            AF     V+GA+VIY   TG+SRG+GF+S+ +   +++AL  +N VE+EGR +R++LA 
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLAS 296

[Close]

BLAST of Bhi01M000470 vs. TAIR10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 142.5 bits (358), Expect = 3.9e-34
Identity = 80/216 (37.04%), Postives = 121/216 (56.02%), Query Frame = 0


Query: 83  EEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGVAELIEVLYDRN 142
           E +  E G  +         S   KL+ GNLP++VDS+QLA + +  G  E++EV+YD+ 
Sbjct: 68  EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127

Query: 143 TGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLY---PETEY-- 202
           TG+SRGF FVTMSS+ +     +  +G    GR LRVN    P  +E  +   P + +  
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGS 187

Query: 203 -----------------KLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGY 262
                            +++VGNLSW V    L   F   G VV ARVIY+ ++G+S+G+
Sbjct: 188 XXXXXXXXXXXXXXXXXRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247

Query: 263 GFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGK 277
           GFV+Y +  E++ A+++L+  +L+GR IRVS AE +
Sbjct: 248 GFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283

[Close]

BLAST of Bhi01M000470 vs. Swiss-Prot
Match: sp|P28644|ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.1e-37
Identity = 92/214 (42.99%), Postives = 132/214 (61.68%), Query Frame = 0


Query: 66  AVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGS-PVESGSTKLYFGNLPYSVDSSQLAA 125
           AV++GE+     V  G E   +++GG E   G S P E    KL+ GNLPY VDS +LA 
Sbjct: 16  AVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPE--EAKLFVGNLPYDVDSEKLAG 75

Query: 126 IVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNFSDK 185
           I    GV E+ EV+Y+R T +SRGF FVTMS++++  K +E L+G    GR L VN    
Sbjct: 76  IFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAA 135

Query: 186 PKPKEPLYPETEY----KLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGY 245
           P+      P  ++    +++VGNL W V +  L Q F  +G VV ARV+ + ETG+SRG+
Sbjct: 136 PRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGF 195

Query: 246 GFVSYSTKSEMETALEALNEVELEGRVIRVSLAE 275
           GFV+ S++SE+  A+ AL+   L+GR +RV++AE
Sbjct: 196 GFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226

[Close]

BLAST of Bhi01M000470 vs. Swiss-Prot
Match: sp|P19684|ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-35
Identity = 79/196 (40.31%), Postives = 124/196 (63.27%), Query Frame = 0


Query: 93  EAVDGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFV 152
           E+V+GG        +LY GNLP+S+ SSQL+ I  + G    +E++YDR T +SRGFAFV
Sbjct: 109 ESVEGG--------RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFV 168

Query: 153 TMSSIKDCNKVIENLDGTAYMGRILRVNFSDKPKPKE------------PLYPETEYKLF 212
           TM S+++  + I   DG+   GR ++VNF + P+  E              + ++ +KL+
Sbjct: 169 TMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLY 228

Query: 213 VGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNE 272
           V NLSW++TS+ L  AF      + A+VIY+  +G+SRG+GF+++S+   M +AL+ +NE
Sbjct: 229 VANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNE 288

Query: 273 VELEGRVIRVSLAEGK 277
           VELEGR +R+++A  K
Sbjct: 289 VELEGRPLRLNVAGQK 296

[Close]

BLAST of Bhi01M000470 vs. Swiss-Prot
Match: sp|P82277|RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.9e-35
Identity = 74/179 (41.34%), Postives = 120/179 (67.04%), Query Frame = 0


Query: 104 GSTKLYFGNLPYSVDSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKV 163
           G+ +LY GN+P ++++ +L  IV+++G  E+ EV+YD+ +G+SR F FVTM +++D N V
Sbjct: 82  GARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAV 141

Query: 164 IENLDGTAYMGRILRVNFSDKP---------KPKEPLYPETEYKLFVGNLSWSVTSETLT 223
           IE L+ T   GR ++VN ++KP         + ++  + E+ YK+++GNL+ +VT+E L 
Sbjct: 142 IEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLK 201

Query: 224 QAFQGYGNVVGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLA 274
             F   G V+GA+V     T KS G+GFVS+S++ E+E A++ALN   LEG+ IRV+ A
Sbjct: 202 DFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260

[Close]

BLAST of Bhi01M000470 vs. Swiss-Prot
Match: sp|P19683|ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-34
Identity = 85/211 (40.28%), Postives = 128/211 (60.66%), Query Frame = 0


Query: 84  EDTAEKGGGEAV-DGGSPVE-------------SGSTKLYFGNLPYSVDSSQLAAIVQDY 143
           E+T E+G  EAV D G   E                 KL+ GNLPY VDS  LA + +  
Sbjct: 100 EETEEEGFVEAVGDAGESDEVXXXXXXXXXXEPPEDAKLFVGNLPYDVDSEGLARLFEQA 159

Query: 144 GVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNFS----DKP 203
           GV E+ EV+Y+R+T +SRGF FVTMS++++  K +E  +     GR+L VN +    ++P
Sbjct: 160 GVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERP 219

Query: 204 KPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYGFVSY 263
           + + P   E  Y+++VGN+ W +    L Q F  +G VV ARV+Y+ ETG+SRG+GFV+ 
Sbjct: 220 E-RPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTM 279

Query: 264 STKSEMETALEALNEVELEGRVIRVSLAEGK 277
           ++++EM  A+  L+   L+GR IRV++AE +
Sbjct: 280 ASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309

[Close]

BLAST of Bhi01M000470 vs. Swiss-Prot
Match: sp|Q9FGS0|CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.4e-34
Identity = 94/263 (35.74%), Postives = 142/263 (53.99%), Query Frame = 0


Query: 17  SRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPVLIISAAVVQGETAVTA 76
           S   H  + SL + P    L + S++    S  +   S+         A   +GE     
Sbjct: 34  SSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSN-----WAEEEEGEDGSIG 93

Query: 77  GVEEGVEEDTAEKGGGEAVDG-GSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGVAELI 136
           G    V+E        E+ DG G P      KL+ GNLPY VDS  LA + +  G  E+ 
Sbjct: 94  GTSVTVDESF------ESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEIS 153

Query: 137 EVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNFS----DKPKPKEPL 196
           EV+Y+R+T +SRGF FVTMS++++  K +E  +     GR L VN +     +P+ ++P 
Sbjct: 154 EVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE-RQPR 213

Query: 197 YPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYGFVSYSTKSEM 256
             +  ++++VGNL W V S  L + F  +G VV ARV+ + ETG+SRG+GFV  S ++E+
Sbjct: 214 VYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEV 273

Query: 257 ETALEALNEVELEGRVIRVSLAE 275
             A+ AL+   LEGR I+V++AE
Sbjct: 274 NVAIAALDGQNLEGRAIKVNVAE 284

[Close]

BLAST of Bhi01M000470 vs. TrEMBL
Match: tr|A0A0A0L496|A0A0A0L496_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 1.6e-130
Identity = 250/279 (89.61%), Postives = 260/279 (93.19%), Query Frame = 0


Query: 2   AAATGASFFATPLRGSRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPVL 61
           AAATGASFFAT LRGSRSKHWLSDSLLATPSTQVLPILSRS AIES  LRA SE+ RPV+
Sbjct: 5   AAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKWRPVM 64

Query: 62  IISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSSQ 121
           IISAAVVQGETAVT GVEEGVEE+T        V+GGSPVESGSTKLYFGNLPYSVDSSQ
Sbjct: 65  IISAAVVQGETAVTVGVEEGVEEET-------EVEGGSPVESGSTKLYFGNLPYSVDSSQ 124

Query: 122 LAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNF 181
           LAAIVQDYG+AELIEVLYDRNTGKSRGFAFVTMSSI+DCNKVIENLDG+AYMGRILRVNF
Sbjct: 125 LAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNF 184

Query: 182 SDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYG 241
           SDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQ YGNVVGARVIY+GETGKSRGYG
Sbjct: 185 SDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYG 244

Query: 242 FVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 281
           FVSYSTKSEMETALE +NE+ELEGRVIRVSLAEGKQA G
Sbjct: 245 FVSYSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]

BLAST of Bhi01M000470 vs. TrEMBL
Match: tr|A0A1S4DSH7|A0A1S4DSH7_CUCME (LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC103483544 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 1.5e-128
Identity = 247/269 (91.82%), Postives = 251/269 (93.31%), Query Frame = 0


Query: 2   AAATGASFFATPLRGSRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPVL 61
           AAATGASFF TPLRGSRSKHW SDSLLATPSTQVLPILSRS  IES PLRA SER RPVL
Sbjct: 5   AAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSERWRPVL 64

Query: 62  IISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSSQ 121
           IISAAVVQGETAV  GVEEGVEE+T       AV+GGSPVESGSTKLYFGNLPYSVDSSQ
Sbjct: 65  IISAAVVQGETAVMVGVEEGVEEET-------AVEGGSPVESGSTKLYFGNLPYSVDSSQ 124

Query: 122 LAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNF 181
           LAAIVQD+GVAELIEVLYDRNTGKSRGFAFVTMSSI+DCNKVIENLDGTAYMGRILRVNF
Sbjct: 125 LAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNF 184

Query: 182 SDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYG 241
           SDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQ YGNVVGARVIYNGETGKSRGYG
Sbjct: 185 SDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYG 244

Query: 242 FVSYSTKSEMETALEALNEVELEGRVIRV 271
           FVSYSTKSEMETALEALNEVELEGRVIRV
Sbjct: 245 FVSYSTKSEMETALEALNEVELEGRVIRV 266

[Close]

BLAST of Bhi01M000470 vs. TrEMBL
Match: tr|A0A2C9UCS0|A0A2C9UCS0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G045900 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.0e-89
Identity = 186/282 (65.96%), Postives = 222/282 (78.72%), Query Frame = 0


Query: 2   AAATGASFFAT--PLRGSRSKHWLSDSLLATPSTQV---LPILSRSQAIESAPLRAFSER 61
           AAA G+SF  +   L+   +K++LSDSLL  PST++     I+SRS AIE   L A S R
Sbjct: 6   AAAVGSSFSPSIHTLKCRNTKNFLSDSLLKVPSTRITTATSIISRSYAIEPLSLVAVSWR 65

Query: 62  GRPVLIISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYS 121
              V  +SAAV Q E A T  VEEG+ +D  ++  GE       V   +TKLYFGNLPY+
Sbjct: 66  ---VPRVSAAVAQEEAAATTPVEEGLPQDEQQQVAGEGEQEADQVVL-NTKLYFGNLPYN 125

Query: 122 VDSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRI 181
           VDS+QLA I+QDYG  EL+EVLY+R+TG+SRGFAFVTMSS++DCN VIENLDG+ YMGRI
Sbjct: 126 VDSAQLAGIIQDYGTPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIENLDGSQYMGRI 185

Query: 182 LRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGK 241
           LRVNFSDKPKPKEPLYPETE+KLFVGNLSWSVTSE+LT+AFQ YGNVVGARV+Y+GETG+
Sbjct: 186 LRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLTEAFQEYGNVVGARVLYDGETGR 245

Query: 242 SRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQA 279
           SRGYGFV YST SEME ALE+LN VELEGR +RVSLA+GK++
Sbjct: 246 SRGYGFVCYSTLSEMENALESLNGVELEGRALRVSLAQGKKS 283

[Close]

BLAST of Bhi01M000470 vs. TrEMBL
Match: tr|A0A2I4EL27|A0A2I4EL27_9ROSI (28 kDa ribonucleoprotein, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108990562 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 5.3e-86
Identity = 185/282 (65.60%), Postives = 218/282 (77.30%), Query Frame = 0


Query: 2   AAATGASFFAT--PLRGSRSKHWLSD-SLLATPSTQVLPILSRSQAIESAPLRAFSERGR 61
           AAA G+SF  +   L+  RSK   SD  LL   ST++L   S S  IE   L A S + R
Sbjct: 9   AAAVGSSFSPSIHTLKCIRSKQCPSDVPLLRISSTRMLASTSLSSRIEQLSLSAISSKWR 68

Query: 62  PVLIISAAVVQGETAVTAGVEEG--VEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYS 121
            +L IS AV Q E AVTA ++ G  VE+   +KGG E +  G    + +TKLYFGNLPYS
Sbjct: 69  -LLRISTAVAQEEVAVTAELDAGTLVEDHQDDKGGEEVLLDGEAESAVNTKLYFGNLPYS 128

Query: 122 VDSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRI 181
           VDS+QLA I+QD+   ELIEVLYDR++G+SRGFAFVTMSSI+DCN VI+NLDG  YMGR 
Sbjct: 129 VDSAQLAGIIQDFRSPELIEVLYDRDSGRSRGFAFVTMSSIEDCNLVIQNLDGKEYMGRT 188

Query: 182 LRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGK 241
           LRVNFSDKPKPK+PLYPETE+KLFVGNLSWSVTSE+LTQAFQ YGNVVG RV+Y+GETG+
Sbjct: 189 LRVNFSDKPKPKDPLYPETEHKLFVGNLSWSVTSESLTQAFQEYGNVVGGRVLYDGETGR 248

Query: 242 SRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQA 279
           SRGYGFV YSTKSEMETALE+LN VELEGR +RVSLA+GK++
Sbjct: 249 SRGYGFVCYSTKSEMETALESLNGVELEGRAMRVSLAQGKRS 289

[Close]

BLAST of Bhi01M000470 vs. TrEMBL
Match: tr|A0A2N9FSY1|A0A2N9FSY1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21719 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 8.8e-81
Identity = 182/298 (61.07%), Postives = 213/298 (71.48%), Query Frame = 0


Query: 2   AAATGASF-----FATPLRGSRSKHWLSDSLL-ATPSTQVLPILSRSQAI-ESAPLRAFS 61
           AAA G+SF      +T L+  R K  LSD  L  + ST++   +S S  I E   + A  
Sbjct: 6   AAAVGSSFTSSIHSSTTLKCIRPKQCLSDPFLRLSSSTRMFAPISHSYRINEQLSVNAII 65

Query: 62  ERGRPVLIISAA---------VVQGETAVTAGVEEGVEEDTA-----EKGGGEAVDGGSP 121
                +L ISAA         V Q E  VTA  E  V+ +       +K   E +D G  
Sbjct: 66  SSKWRLLRISAAVEEVAVTAEVAQDEVVVTADDEVQVDTELGLVEEEDKREEEVLDNGEG 125

Query: 122 VESGSTKLYFGNLPYSVDSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDC 181
               STKLYFGNLPYSVDS+QLA ++QD+G  ELIEVLY+R+TG+SRGFAFVTMSS++DC
Sbjct: 126 EGLVSTKLYFGNLPYSVDSAQLAGLIQDFGSPELIEVLYNRDTGRSRGFAFVTMSSLEDC 185

Query: 182 NKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGY 241
           N VIENLDG  Y+GR LRVNFSDKPKPKEPLYPETEYKLFVGNLSWS TSE+LTQAFQ Y
Sbjct: 186 NAVIENLDGKEYLGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSATSESLTQAFQEY 245

Query: 242 GNVVGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQA 279
           GNVVGARV+Y+GETG+SRGYGFV YSTKSEMETALEALN VELEGR +RVSLA+GK++
Sbjct: 246 GNVVGARVLYDGETGRSRGYGFVCYSTKSEMETALEALNGVELEGRELRVSLAQGKRS 303

[Close]

BLAST of Bhi01M000470 vs. NCBI nr
Match: XP_004134038.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1 hypothetical protein Csa_3G134590 [Cucumis sativus])

HSP 1 Score: 474.6 bits (1220), Expect = 2.4e-130
Identity = 250/279 (89.61%), Postives = 260/279 (93.19%), Query Frame = 0


Query: 2   AAATGASFFATPLRGSRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPVL 61
           AAATGASFFAT LRGSRSKHWLSDSLLATPSTQVLPILSRS AIES  LRA SE+ RPV+
Sbjct: 5   AAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKWRPVM 64

Query: 62  IISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSSQ 121
           IISAAVVQGETAVT GVEEGVEE+T        V+GGSPVESGSTKLYFGNLPYSVDSSQ
Sbjct: 65  IISAAVVQGETAVTVGVEEGVEEET-------EVEGGSPVESGSTKLYFGNLPYSVDSSQ 124

Query: 122 LAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNF 181
           LAAIVQDYG+AELIEVLYDRNTGKSRGFAFVTMSSI+DCNKVIENLDG+AYMGRILRVNF
Sbjct: 125 LAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNF 184

Query: 182 SDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYG 241
           SDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQ YGNVVGARVIY+GETGKSRGYG
Sbjct: 185 SDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYG 244

Query: 242 FVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 281
           FVSYSTKSEMETALE +NE+ELEGRVIRVSLAEGKQA G
Sbjct: 245 FVSYSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]

BLAST of Bhi01M000470 vs. NCBI nr
Match: XP_016898952.1 (PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo])

HSP 1 Score: 468.0 bits (1203), Expect = 2.2e-128
Identity = 247/269 (91.82%), Postives = 251/269 (93.31%), Query Frame = 0


Query: 2   AAATGASFFATPLRGSRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPVL 61
           AAATGASFF TPLRGSRSKHW SDSLLATPSTQVLPILSRS  IES PLRA SER RPVL
Sbjct: 5   AAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSERWRPVL 64

Query: 62  IISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSSQ 121
           IISAAVVQGETAV  GVEEGVEE+T       AV+GGSPVESGSTKLYFGNLPYSVDSSQ
Sbjct: 65  IISAAVVQGETAVMVGVEEGVEEET-------AVEGGSPVESGSTKLYFGNLPYSVDSSQ 124

Query: 122 LAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNF 181
           LAAIVQD+GVAELIEVLYDRNTGKSRGFAFVTMSSI+DCNKVIENLDGTAYMGRILRVNF
Sbjct: 125 LAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNF 184

Query: 182 SDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYG 241
           SDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQ YGNVVGARVIYNGETGKSRGYG
Sbjct: 185 SDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYG 244

Query: 242 FVSYSTKSEMETALEALNEVELEGRVIRV 271
           FVSYSTKSEMETALEALNEVELEGRVIRV
Sbjct: 245 FVSYSTKSEMETALEALNEVELEGRVIRV 266

[Close]

BLAST of Bhi01M000470 vs. NCBI nr
Match: XP_022979333.1 (putative G3BP-like protein [Cucurbita maxima])

HSP 1 Score: 448.0 bits (1151), Expect = 2.4e-122
Identity = 230/269 (85.50%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 2   AAATGASFFATPLRGSRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPVL 61
           AAATG SFF TP+RGSRSKHWLSDS LATPSTQVLPILSR  A++SAPLRAFSER RP  
Sbjct: 3   AAATGVSFFTTPIRGSRSKHWLSDSPLATPSTQVLPILSRPLAVKSAPLRAFSERWRPAT 62

Query: 62  IISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSSQ 121
           +ISAA VQGE A+T G EEGVEE+TAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDS Q
Sbjct: 63  VISAASVQGEAALTVGFEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSPQ 122

Query: 122 LAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNF 181
           LAAIVQDYGVAELIEVLYDR+TGKSRGFAFVTM+SI+DCNKVIENL+G  YMGRILRVNF
Sbjct: 123 LAAIVQDYGVAELIEVLYDRDTGKSRGFAFVTMNSIEDCNKVIENLNGATYMGRILRVNF 182

Query: 182 SDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYG 241
           SDKPKPKE L+PETEYKLFV NL+WSVTSE+LTQAFQ YGNVVGARVIYNGETG+SRGYG
Sbjct: 183 SDKPKPKEHLFPETEYKLFVRNLAWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYG 242

Query: 242 FVSYSTKSEMETALEALNEVELEGRVIRV 271
           FVSYSTKSEMETAL ALN+   EGRV+ V
Sbjct: 243 FVSYSTKSEMETALVALNDAVFEGRVLSV 271

[Close]

BLAST of Bhi01M000470 vs. NCBI nr
Match: XP_022937376.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 431.4 bits (1108), Expect = 2.3e-117
Identity = 229/280 (81.79%), Postives = 246/280 (87.86%), Query Frame = 0


Query: 1   MAAATGASFFATPLRGSRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPV 60
           MA A GAS F T       K WLSD+LL TPS  + PILSRS AIESAPLRAFSER RP 
Sbjct: 13  MATAAGASLFTT-------KRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERWRPA 72

Query: 61  LIISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSS 120
           L ISAAVVQ + AVT GVEEGV ++TAE+G G+AVDGGSPVESG TKLYFGNLPYSVDSS
Sbjct: 73  LGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSS 132

Query: 121 QLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVN 180
           QLA IVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSI+DCNKVIENLDGTAYMGR+LRVN
Sbjct: 133 QLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVN 192

Query: 181 FSDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGY 240
           FSDKPKPK  LYP++EY+L+V NLSWSVTSE+L QAFQ YGNVVGARVIY+ ETGKSRGY
Sbjct: 193 FSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGY 252

Query: 241 GFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 281
           GFVSYSTKSEMETALEA NE+ELEGRVIRVSLA+GKQAQG
Sbjct: 253 GFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 285

[Close]

BLAST of Bhi01M000470 vs. NCBI nr
Match: XP_023539751.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429.5 bits (1103), Expect = 8.8e-117
Identity = 228/279 (81.72%), Postives = 245/279 (87.81%), Query Frame = 0


Query: 2   AAATGASFFATPLRGSRSKHWLSDSLLATPSTQVLPILSRSQAIESAPLRAFSERGRPVL 61
           AAA GAS F T       K WLSD+LL TPS  + PILSRS AIESAPLRAFSER RP L
Sbjct: 17  AAAAGASLFTT-------KRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERWRPAL 76

Query: 62  IISAAVVQGETAVTAGVEEGVEEDTAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSSQ 121
            ISAAVVQ + AVT GVEEGV ++TAE+G G+ VDGGSPVESG TKLYFGNLPYSVDSSQ
Sbjct: 77  GISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQ 136

Query: 122 LAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIKDCNKVIENLDGTAYMGRILRVNF 181
           LA IVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSI+DCNKVIENLDGTAYMGR+LRVNF
Sbjct: 137 LADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNF 196

Query: 182 SDKPKPKEPLYPETEYKLFVGNLSWSVTSETLTQAFQGYGNVVGARVIYNGETGKSRGYG 241
           SDKPKPK  LYP++EY+L+V NLSWSVTSE+L QAFQ YGNVVGARVIY+ ETGKSRGYG
Sbjct: 197 SDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYG 256

Query: 242 FVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 281
           FVSYSTKSEMETALEA NE+ELEGRVIRVSLA+GKQAQG
Sbjct: 257 FVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288

The following BLAST results are available for this feature:

BLAST of Bhi01M000470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60000.1	4.4e-70	59.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	3.5e-35	35.74	chloroplast RNA-binding protein 31B	[more]
AT4G24770.1	1.3e-34	43.02	31-kDa RNA binding protein	[more]
AT3G52380.1	3.0e-34	37.16	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	3.9e-34	37.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Bhi01M000470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P28644\|ROC1_SPIOL	8.1e-37	42.99	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
sp\|P19684\|ROC5_NICSY	1.5e-35	40.31	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
sp\|P82277\|RRP2_SPIOL	9.9e-35	41.34	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
sp\|P19683\|ROC4_NICSY	1.3e-34	40.28	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
sp\|Q9FGS0\|CP31B_ARATH	6.4e-34	35.74	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]

BLAST of Bhi01M000470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L496\|A0A0A0L496_CUCSA	1.6e-130	89.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1	[more]
tr\|A0A1S4DSH7\|A0A1S4DSH7_CUCME	1.5e-128	91.82	LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2C9UCS0\|A0A2C9UCS0_MANES	4.0e-89	65.96	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G045900 PE=4 SV=...	[more]
tr\|A0A2I4EL27\|A0A2I4EL27_9ROSI	5.3e-86	65.60	28 kDa ribonucleoprotein, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108...	[more]
tr\|A0A2N9FSY1\|A0A2N9FSY1_FAGSY	8.8e-81	61.07	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21719 PE=4 SV=1	[more]

BLAST of Bhi01M000470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134038.1	2.4e-130	89.61	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1...	[more]
XP_016898952.1	2.2e-128	91.82	PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo]	[more]
XP_022979333.1	2.4e-122	85.50	putative G3BP-like protein [Cucurbita maxima]	[more]
XP_022937376.1	2.3e-117	81.79	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata]	[more]
XP_023539751.1	8.8e-117	81.72	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G000470	Bhi01G000470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M000470.exon1	Bhi01M000470.exon1	exon
Bhi01M000470.exon2	Bhi01M000470.exon2	exon
Bhi01M000470.exon3	Bhi01M000470.exon3	exon
Bhi01M000470.exon4	Bhi01M000470.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M000470	cds.Bhi01M000470	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M000470	Bhi01M000470-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 198..271 e-value: 2.7E-27 score: 106.7 coord: 107..180 e-value: 2.2E-20 score: 83.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 108..177 e-value: 7.1E-15 score: 54.5 coord: 199..269 e-value: 2.2E-21 score: 75.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 106..184 score: 17.046
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 197..275 score: 19.809
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 188..280 e-value: 2.5E-28 score: 100.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 71..187 e-value: 1.7E-23 score: 85.3
None	No IPR available	PANTHER	PTHR44202	FAMILY NOT NAMED	coord: 79..277
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 192..277
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 101..189