Bhi09M001670 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09M001670
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr9 : 55332187 .. 55332501 (-)
Sequence length	315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTACAGGGAAGGAGCGGCGGCAACAGCGGCAGCGGCAGCGGCGGCGGAGGAGGAAATGGTGAAGGAAGTAGCAGATTAATGGAGTACGAGTTTTTCCCAAGGAAAAATTGCAGAGGCACAGAGATCGAGGAACTGAAAATGCCAAAGGAAGAATTAAGTTTATTTGGAGAAGAAAATGAAGAAGAAGAAGAAGTGCTGGCAGTGGATCATGGAGAAGGTTCTTGTATTACTACAAGCTGCAATGATATCATTAATGGCGGTACCAGAAATTCCACTGCTCTTGATTTATCTCTCAAGCTTTCATTTTAG

mRNA sequence

ATGAACTTACAGGGAAGGAGCGGCGGCAACAGCGGCAGCGGCAGCGGCGGCGGAGGAGGAAATGGTGAAGGAAGTAGCAGATTAATGGAGTACGAGTTTTTCCCAAGGAAAAATTGCAGAGGCACAGAGATCGAGGAACTGAAAATGCCAAAGGAAGAATTAAGTTTATTTGGAGAAGAAAATGAAGAAGAAGAAGAAGTGCTGGCAGTGGATCATGGAGAAGGTTCTTGTATTACTACAAGCTGCAATGATATCATTAATGGCGGTACCAGAAATTCCACTGCTCTTGATTTATCTCTCAAGCTTTCATTTTAG

Coding sequence (CDS)

ATGAACTTACAGGGAAGGAGCGGCGGCAACAGCGGCAGCGGCAGCGGCGGCGGAGGAGGAAATGGTGAAGGAAGTAGCAGATTAATGGAGTACGAGTTTTTCCCAAGGAAAAATTGCAGAGGCACAGAGATCGAGGAACTGAAAATGCCAAAGGAAGAATTAAGTTTATTTGGAGAAGAAAATGAAGAAGAAGAAGAAGTGCTGGCAGTGGATCATGGAGAAGGTTCTTGTATTACTACAAGCTGCAATGATATCATTAATGGCGGTACCAGAAATTCCACTGCTCTTGATTTATCTCTCAAGCTTTCATTTTAG

Protein sequence

MNLQGRSGGNSGSGSGGGGGNGEGSSRLMEYEFFPRKNCRGTEIEELKMPKEELSLFGEENEEEEEVLAVDHGEGSCITTSCNDIINGGTRNSTALDLSLKLSF

Homology

[Close]

BLAST of Bhi09M001670 vs. TrEMBL
Match: tr|A0A1S3BZ18|A0A1S3BZ18_CUCME (uncharacterized protein LOC103494987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494987 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.8e-26
Identity = 67/79 (84.81%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 27  RLMEYEFFPRKNCRGTEIEELKMPKEELSLFGE-ENEEEEEVLAVDHGEGSCITTSCNDI 86
           +LMEYEFFPRKN RGTEIEELKMPKEELSLF E        VLA+DHGEGSCITTSCNDI
Sbjct: 231 KLMEYEFFPRKNGRGTEIEELKMPKEELSLFREXXXXXXXXVLAMDHGEGSCITTSCNDI 290

Query: 87  INGGTRNSTALDLSLKLSF 105
           INGGTRNSTALDLSLKLSF
Sbjct: 291 INGGTRNSTALDLSLKLSF 309

[Close]

BLAST of Bhi09M001670 vs. TrEMBL
Match: tr|A0A1S3BZ57|A0A1S3BZ57_CUCME (uncharacterized protein LOC103494987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494987 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.8e-26
Identity = 67/79 (84.81%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 27  RLMEYEFFPRKNCRGTEIEELKMPKEELSLFGE-ENEEEEEVLAVDHGEGSCITTSCNDI 86
           +LMEYEFFPRKN RGTEIEELKMPKEELSLF E        VLA+DHGEGSCITTSCNDI
Sbjct: 232 KLMEYEFFPRKNGRGTEIEELKMPKEELSLFREXXXXXXXXVLAMDHGEGSCITTSCNDI 291

Query: 87  INGGTRNSTALDLSLKLSF 105
           INGGTRNSTALDLSLKLSF
Sbjct: 292 INGGTRNSTALDLSLKLSF 310

[Close]

BLAST of Bhi09M001670 vs. TrEMBL
Match: tr|A0A0A0LDJ3|A0A0A0LDJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850670 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 28  LMEYEFFPRKNCRGTEIEELKMPKEELSLFGE-ENEEEEEVLAVDHGEGSCITTSCNDII 87
           LMEYEFFPRKN RGTEIEELKMPKEELSLF E        VLA+DHGEGSCITTSCNDII
Sbjct: 231 LMEYEFFPRKNGRGTEIEELKMPKEELSLFREXXXXXXXXVLAMDHGEGSCITTSCNDII 290

Query: 88  NGGTRNSTALDLSLKLSF 105
           NGGTRNSTALDLSLKLSF
Sbjct: 291 NGGTRNSTALDLSLKLSF 308

[Close]

BLAST of Bhi09M001670 vs. NCBI nr
Match: XP_008454619.1 (PREDICTED: uncharacterized protein LOC103494987 isoform X1 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 67/79 (84.81%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 27  RLMEYEFFPRKNCRGTEIEELKMPKEELSLFGE-ENEEEEEVLAVDHGEGSCITTSCNDI 86
           +LMEYEFFPRKN RGTEIEELKMPKEELSLF E        VLA+DHGEGSCITTSCNDI
Sbjct: 232 KLMEYEFFPRKNGRGTEIEELKMPKEELSLFREXXXXXXXXVLAMDHGEGSCITTSCNDI 291

Query: 87  INGGTRNSTALDLSLKLSF 105
           INGGTRNSTALDLSLKLSF
Sbjct: 292 INGGTRNSTALDLSLKLSF 310

[Close]

BLAST of Bhi09M001670 vs. NCBI nr
Match: XP_008454620.1 (PREDICTED: uncharacterized protein LOC103494987 isoform X2 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 67/79 (84.81%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 27  RLMEYEFFPRKNCRGTEIEELKMPKEELSLFGE-ENEEEEEVLAVDHGEGSCITTSCNDI 86
           +LMEYEFFPRKN RGTEIEELKMPKEELSLF E        VLA+DHGEGSCITTSCNDI
Sbjct: 231 KLMEYEFFPRKNGRGTEIEELKMPKEELSLFREXXXXXXXXVLAMDHGEGSCITTSCNDI 290

Query: 87  INGGTRNSTALDLSLKLSF 105
           INGGTRNSTALDLSLKLSF
Sbjct: 291 INGGTRNSTALDLSLKLSF 309

[Close]

BLAST of Bhi09M001670 vs. NCBI nr
Match: KGN59863.1 (hypothetical protein Csa_3G850670 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.3e-25
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 28  LMEYEFFPRKNCRGTEIEELKMPKEELSLFGE-ENEEEEEVLAVDHGEGSCITTSCNDII 87
           LMEYEFFPRKN RGTEIEELKMPKEELSLF E        VLA+DHGEGSCITTSCNDII
Sbjct: 231 LMEYEFFPRKNGRGTEIEELKMPKEELSLFREXXXXXXXXVLAMDHGEGSCITTSCNDII 290

Query: 88  NGGTRNSTALDLSLKLSF 105
           NGGTRNSTALDLSLKLSF
Sbjct: 291 NGGTRNSTALDLSLKLSF 308

[Close]

BLAST of Bhi09M001670 vs. NCBI nr
Match: XP_011652373.1 (PREDICTED: uncharacterized protein LOC105435018 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.3e-25
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 28  LMEYEFFPRKNCRGTEIEELKMPKEELSLFGE-ENEEEEEVLAVDHGEGSCITTSCNDII 87
           LMEYEFFPRKN RGTEIEELKMPKEELSLF E        VLA+DHGEGSCITTSCNDII
Sbjct: 73  LMEYEFFPRKNGRGTEIEELKMPKEELSLFREXXXXXXXXVLAMDHGEGSCITTSCNDII 132

Query: 88  NGGTRNSTALDLSLKLSF 105
           NGGTRNSTALDLSLKLSF
Sbjct: 133 NGGTRNSTALDLSLKLSF 150

[Close]

BLAST of Bhi09M001670 vs. NCBI nr
Match: XP_022975733.1 (protein SPOROCYTELESS [Cucurbita maxima])

HSP 1 Score: 109.8 bits (273), Expect = 5.8e-21
Identity = 60/83 (72.29%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 28  LMEYEFFPRKNCRGTEIEELKMPKEELSLFGEENEEEEEVL------AVDHGEGSCITTS 87
           LMEYEFFPRKN RGTE EELK P EEL LF E               AVDHGEGSCITTS
Sbjct: 236 LMEYEFFPRKNGRGTEFEELKRPNEELGLFAEXXXXXXXXXXXXXXQAVDHGEGSCITTS 295

Query: 88  CNDIINGGTRNSTALDLSLKLSF 105
           C+DIINGGTRNST LDLSLKLSF
Sbjct: 296 CSDIINGGTRNSTVLDLSLKLSF 318

The following BLAST results are available for this feature:

BLAST of Bhi09M001670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09M001670 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09M001670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZ18\|A0A1S3BZ18_CUCME	8.8e-26	84.81	uncharacterized protein LOC103494987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BZ57\|A0A1S3BZ57_CUCME	8.8e-26	84.81	uncharacterized protein LOC103494987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LDJ3\|A0A0A0LDJ3_CUCSA	1.5e-25	85.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850670 PE=4 SV=1	[more]

BLAST of Bhi09M001670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454619.1	1.3e-25	84.81	PREDICTED: uncharacterized protein LOC103494987 isoform X1 [Cucumis melo]	[more]
XP_008454620.1	1.3e-25	84.81	PREDICTED: uncharacterized protein LOC103494987 isoform X2 [Cucumis melo]	[more]
KGN59863.1	2.3e-25	85.90	hypothetical protein Csa_3G850670 [Cucumis sativus]	[more]
XP_011652373.1	2.3e-25	85.90	PREDICTED: uncharacterized protein LOC105435018 [Cucumis sativus]	[more]
XP_022975733.1	5.8e-21	72.29	protein SPOROCYTELESS [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR014855	NOZZLE

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G001670	Bhi09G001670	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M001670	cds.Bhi09M001670	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M001670.exon1	Bhi09M001670.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M001670	Bhi09M001670-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33388	FAMILY NOT NAMED	coord: 20..103
IPR014855	Plant transcription factor NOZZLE	PANTHER	PTHR33388:SF2	PROTEIN SPOROCYTELESS	coord: 20..103