Cla015206 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015206
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Methyltransferase-like protein 13 (AHRD V1 ***- MTL13_MOUSE)
Location	Chr9 : 3498508 .. 3499959 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAGGGACGTGTCCAGCTGCAACACCTACAACTATGGCGATGCTGTCTACTGGGACGCTCGTTACCTGCAGGAGGCTGGTTCTTTTGATTGGTATCAGCGTTATGCTGCTCTTCGTCCCTTTGTTCGTAAGTTCATCAGCACTTCCGCCTCCGTCCTTATGGTCGGCTGTGGTAATGCTGGTAATTTCCCTCTATTTCACCTTTCTGCCTTTTTCCAGTTTCGTTTTCTTTTGAGATTTGAATTGTTCTCGAGGAAGCGTTGGAAGTTGGAATTGGAATGAATTTTCGATGCATTCAGTTTTTCTTCGTCCTAAATTTATGTTCGATAGATTTTAAGTTCATCGGATTGCGAGATTTAGGCGGTTTGGCATTCGTGGAAATCGAATCGAGGAGCTGTCTTGGAATTTTGCCACTGAGAATTCATGTTCAACTATTTGGACTCTGTTGGATGAGAATTACATGATCGAGGGAATGAACTAGACCACCTGCTTTTAGTATTCATATTTTTGGTGTTAATCCAGTCCTTGATTCTCATGTAAATTGGCTCTGAAAGAATCAATCTTGAGCTTACGTAGCTTAATTTTTGGATTAAATCAAAACTTATTTAAGAGCTGAAAGCATGAGCAGAATGGGAAGGCCAAGAAGTTAATAGATGAGAGGGGGTTCAAGTTACTGATTATCGAGGTTGTAAGCTGTATTTGGAAATTGGAATTTCTGAAAATGTGACATATTTGGCAAAAATGTCCACAATAACACGTGTTAAGATGCAAATATCAGTAAATATTTGGAAGTTATTGACGATGTATTGTTTGATTATTATCTACATAATGGAAAAGATGCTGTGTAGAAATTGGTAACTCATGCGGTGTAATTAAGAGCTTCGCCACATTAAATATAATCTAATTATTGTCTGCTTCTTAATAAAACATTGATTTTAACCGTGGCACTTTTGTACTTGTAGTCATGTCAGAAGATATGGTCAAGGATGGATATGAAGACATAATGAACGTTGACATTTCTTCGGTGGCAATTGACATAATGAGAAGAAAGTATCAGTTCATCCCCCAGTTGAAATGTATCCTCTGAGGCTTGTATCTTTGTTAAATTTCCATGAACGGTTTGGTTTGTTTTCAAATTAACACTCGAGTTGCTTGTGTTGACAGAAGTGTTAGTTTGGTAATAGAGAGAGAGAGATAAACTTAGTACGATTATCTTAGTCATAATTATTGAGTTTGTTAAAATTGAATCATAAATACTTGGGTAAAGTGTAGGGGAAATGGTCCTCTCAAAAGGTTGTCGTCCTTGTATTCCCTTTTAGCTAGAGTACAATCAGCTCCTATAAGTTCCCTTGACAAATCTGTATAGACATGGAAATGGATGTCAGGGACATGAGCTTCTTCCCAGACGAGAAATTTGGTGCTGTCATTGATAAAGGTCTGACTTCTTGA

mRNA sequence

ATGTACAGGGACGTGTCCAGCTGCAACACCTACAACTATGGCGATGCTGTCTACTGGGACGCTCGTTACCTGCAGGAGGCTGGTTCTTTTGATTGGTATCAGCGTTATGCTGCTCTTCGTCCCTTTGTTCGTAAGTTCATCAGCACTTCCGCCTCCGTCCTTATGGTCGGCTGTGGTAATGCTGACATGGAAATGGATGTCAGGGACATGAGCTTCTTCCCAGACGAGAAATTTGGTGCTGTCATTGATAAAGGTCTGACTTCTTGA

Coding sequence (CDS)

ATGTACAGGGACGTGTCCAGCTGCAACACCTACAACTATGGCGATGCTGTCTACTGGGACGCTCGTTACCTGCAGGAGGCTGGTTCTTTTGATTGGTATCAGCGTTATGCTGCTCTTCGTCCCTTTGTTCGTAAGTTCATCAGCACTTCCGCCTCCGTCCTTATGGTCGGCTGTGGTAATGCTGACATGGAAATGGATGTCAGGGACATGAGCTTCTTCCCAGACGAGAAATTTGGTGCTGTCATTGATAAAGGTCTGACTTCTTGA

Protein sequence

MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGNADMEMDVRDMSFFPDEKFGAVIDKGLTS

Homology

[Close]

BLAST of Cla015206 vs. TrEMBL
Match: A0A0A0K6H6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420810 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.5e-36
Identity = 82/123 (66.67%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 1   MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGN 60
           MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRY++LRPFVRKFISTSASVLMVGCGN
Sbjct: 1   MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYSSLRPFVRKFISTSASVLMVGCGN 60

Query: 61  A--------------------------------------DMEMDVRDMSFFPDEKFGAVI 86
           A                                       MEMDVRDMSFFPDEKFGAVI
Sbjct: 61  AVMSEDMVKDGYEDIMNVDISSVAIDMMKRKYQFIPQLKYMEMDVRDMSFFPDEKFGAVI 120

[Close]

BLAST of Cla015206 vs. TrEMBL
Match: A0A067H6I3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025475mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-35
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGN 60
          MYRDVSSCNTYNYGDA+YW+ARY+QE GSFDWYQRY+ALRPFVRK+I TS+ VLMVGCGN
Sbjct: 1  MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60

Query: 61 ADMEMDVRDMSFFPDEKFGAVIDKG 86
          A ++MDVRDMSFF DE F AVIDKG
Sbjct: 61 AHLQMDVRDMSFFEDESFDAVIDKG 85

[Close]

BLAST of Cla015206 vs. TrEMBL
Match: V4SWB2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032531mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-35
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGN 60
          MYRDVSSCNTYNYGDA+YW+ARY+QE GSFDWYQRY+ALRPFVRK+I TS+ VLMVGCGN
Sbjct: 1  MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60

Query: 61 ADMEMDVRDMSFFPDEKFGAVIDKG 86
          A ++MDVRDMSFF DE F AVIDKG
Sbjct: 61 AHLQMDVRDMSFFEDESFDAVIDKG 85

[Close]

BLAST of Cla015206 vs. TrEMBL
Match: A0A0K9R6B5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107170 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.6e-30
Identity = 69/123 (56.10%), Postives = 80/123 (65.04%), Query Frame = 1


Query: 1   MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGN 60
           M+RDVSSCNTYNYGD++YWDARY+QEAGSFDWYQRY+ALRPFVRKF+ TS+ +LMVGCGN
Sbjct: 5   MFRDVSSCNTYNYGDSLYWDARYIQEAGSFDWYQRYSALRPFVRKFVPTSSRILMVGCGN 64

Query: 61  A--------------------------------------DMEMDVRDMSFFPDEKFGAVI 86
           A                                       M+MDVRDMS FPD+ FG+VI
Sbjct: 65  AVMSEDMVKDEYEEIMNIDISTVAIDMMRRKHAHIPQLKYMQMDVRDMSVFPDDSFGSVI 124

[Close]

BLAST of Cla015206 vs. TrEMBL
Match: D7TDM2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00120 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.7e-30
Identity = 70/123 (56.91%), Postives = 79/123 (64.23%), Query Frame = 1


Query: 1   MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGN 60
           MYRDVSSCN+YNYGDA+YWDARY+QEAGSFDWYQRY+ALRPFVR++I TS+ VLMVGCGN
Sbjct: 1   MYRDVSSCNSYNYGDALYWDARYIQEAGSFDWYQRYSALRPFVRRYIPTSSRVLMVGCGN 60

Query: 61  A--------------------------------------DMEMDVRDMSFFPDEKFGAVI 86
           A                                       M+MDV+DMSFFPDE F  VI
Sbjct: 61  AVMSEDMVKDGYEEIMNIDISSVAIEMMRRKHEHIHQLQYMQMDVKDMSFFPDESFDCVI 120

[Close]

BLAST of Cla015206 vs. NCBI nr
Match: gi|449436703|ref|XP_004136132.1| (PREDICTED: methyltransferase-like protein 13 isoform X1 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 82/123 (66.67%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 1   MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGN 60
           MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRY++LRPFVRKFISTSASVLMVGCGN
Sbjct: 1   MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYSSLRPFVRKFISTSASVLMVGCGN 60

Query: 61  A--------------------------------------DMEMDVRDMSFFPDEKFGAVI 86
           A                                       MEMDVRDMSFFPDEKFGAVI
Sbjct: 61  AVMSEDMVKDGYEDIMNVDISSVAIDMMKRKYQFIPQLKYMEMDVRDMSFFPDEKFGAVI 120

[Close]

BLAST of Cla015206 vs. NCBI nr
Match: gi|641864606|gb|KDO83292.1| (hypothetical protein CISIN_1g025475mg [Citrus sinensis])

HSP 1 Score: 156.0 bits (393), Expect = 3.1e-35
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGN 60
          MYRDVSSCNTYNYGDA+YW+ARY+QE GSFDWYQRY+ALRPFVRK+I TS+ VLMVGCGN
Sbjct: 1  MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60

Query: 61 ADMEMDVRDMSFFPDEKFGAVIDKG 86
          A ++MDVRDMSFF DE F AVIDKG
Sbjct: 61 AHLQMDVRDMSFFEDESFDAVIDKG 85

[Close]

BLAST of Cla015206 vs. NCBI nr
Match: gi|567892805|ref|XP_006438923.1| (hypothetical protein CICLE_v10032531mg [Citrus clementina])

HSP 1 Score: 156.0 bits (393), Expect = 3.1e-35
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGN 60
          MYRDVSSCNTYNYGDA+YW+ARY+QE GSFDWYQRY+ALRPFVRK+I TS+ VLMVGCGN
Sbjct: 1  MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60

Query: 61 ADMEMDVRDMSFFPDEKFGAVIDKG 86
          A ++MDVRDMSFF DE F AVIDKG
Sbjct: 61 AHLQMDVRDMSFFEDESFDAVIDKG 85

[Close]

BLAST of Cla015206 vs. NCBI nr
Match: gi|659122851|ref|XP_008461358.1| (PREDICTED: methyltransferase-like protein 13 isoform X1 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-35
Identity = 81/123 (65.85%), Postives = 83/123 (67.48%), Query Frame = 1


Query: 1   MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYAALRPFVRKFISTSASVLMVGCGN 60
           MYRDVSSCNTYNYGDAVYWDARYL EAGSFDWYQRY++LRPFVRKFISTSASVLMVGCGN
Sbjct: 1   MYRDVSSCNTYNYGDAVYWDARYLHEAGSFDWYQRYSSLRPFVRKFISTSASVLMVGCGN 60

Query: 61  A--------------------------------------DMEMDVRDMSFFPDEKFGAVI 86
           A                                       MEMDVRDMSFFPDEKFGAVI
Sbjct: 61  AVMSEDMVKDGYEDIMNVDISSVAIDMMKRKYQFIPQLKYMEMDVRDMSFFPDEKFGAVI 120

[Close]

BLAST of Cla015206 vs. NCBI nr
Match: gi|747088380|ref|XP_011091776.1| (PREDICTED: methyltransferase-like protein 13 isoform X2 [Sesamum indicum])

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-31
Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 1


Query: 1   MYRDVSSCNTYNYGDAVYWDARYLQEA--GSFDWYQRYAALRPFVRKFISTSASVLMVGC 60
           M+RDVS+CNTYNYGDA+YWDARY+QEA  GSFDWYQRY+ALRPF+RK+IS S+ VLMVGC
Sbjct: 1   MFRDVSACNTYNYGDALYWDARYIQEANCGSFDWYQRYSALRPFIRKYISPSSRVLMVGC 60

Query: 61  GNAD----------------MEMDVRDMSFFPDEKFGAVIDKG 86
           GNA                 M+MDVRDMSFFPD+ F +VIDKG
Sbjct: 61  GNAAIEMMRKKYEDVPQLKYMQMDVRDMSFFPDDSFDSVIDKG 103

The following BLAST results are available for this feature:

BLAST of Cla015206 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6H6_CUCSA	9.5e-36	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420810 PE=4 SV=1	[more]
A0A067H6I3_CITSI	2.1e-35	82.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025475mg PE=4 SV=1	[more]
V4SWB2_9ROSI	2.1e-35	82.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032531mg PE=4 SV=1	[more]
A0A0K9R6B5_SPIOL	1.6e-30	56.10	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107170 PE=4 SV=1	[more]
D7TDM2_VITVI	2.7e-30	56.91	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00120 PE=4 SV=...	[more]

BLAST of Cla015206 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436703\|ref\|XP_004136132.1\|	1.4e-35	66.67	PREDICTED: methyltransferase-like protein 13 isoform X1 [Cucumis sativus]	[more]
gi\|641864606\|gb\|KDO83292.1\|	3.1e-35	82.35	hypothetical protein CISIN_1g025475mg [Citrus sinensis]	[more]
gi\|567892805\|ref\|XP_006438923.1\|	3.1e-35	82.35	hypothetical protein CICLE_v10032531mg [Citrus clementina]	[more]
gi\|659122851\|ref\|XP_008461358.1\|	5.2e-35	65.85	PREDICTED: methyltransferase-like protein 13 isoform X1 [Cucumis melo]	[more]
gi\|747088380\|ref\|XP_011091776.1\|	3.5e-31	66.99	PREDICTED: methyltransferase-like protein 13 isoform X2 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU42953	watermelon EST collection version 2.0	transcribed_cluster
WMU62673	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015206	Cla015206.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU42953	WMU42953	transcribed_cluster
WMU62673	WMU62673	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12176	UNCHARACTERIZED	coord: 1..66 score: 6.6
None	No IPR available	PANTHER	PTHR12176:SF14	SUBFAMILY NOT NAMED	coord: 1..66 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015206	Cla97C09G166810	Watermelon (97103) v2	wmwmbB041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015206	Cucurbita pepo (Zucchini)	cpewmB131
Cla015206	Cucurbita pepo (Zucchini)	cpewmB311
Cla015206	Cucurbita pepo (Zucchini)	cpewmB538
Cla015206	Cucurbita pepo (Zucchini)	cpewmB594
Cla015206	Bottle gourd (USVL1VR-Ls)	lsiwmB175
Cla015206	Bottle gourd (USVL1VR-Ls)	lsiwmB234
Cla015206	Cucumber (Gy14) v2	cgybwmB530
Cla015206	Melon (DHL92) v3.6.1	medwmB198
Cla015206	Melon (DHL92) v3.6.1	medwmB343
Cla015206	Silver-seed gourd	carwmB0106
Cla015206	Silver-seed gourd	carwmB0450
Cla015206	Silver-seed gourd	carwmB0757
Cla015206	Cucumber (Chinese Long) v3	cucwmB593
Cla015206	Watermelon (97103) v2	wmwmbB011
Cla015206	Wax gourd	wgowmB003
Cla015206	Wax gourd	wgowmB582
Cla015206	Watermelon (97103) v1	wmwmB008
Cla015206	Cucurbita moschata (Rifu)	cmowmB843
Cla015206	Cucumber (Gy14) v1	cgywmB212
Cla015206	Cucurbita maxima (Rimu)	cmawmB224
Cla015206	Cucurbita maxima (Rimu)	cmawmB328
Cla015206	Cucurbita maxima (Rimu)	cmawmB407
Cla015206	Cucurbita maxima (Rimu)	cmawmB856
Cla015206	Cucurbita moschata (Rifu)	cmowmB210
Cla015206	Cucurbita moschata (Rifu)	cmowmB322
Cla015206	Cucurbita moschata (Rifu)	cmowmB400
Cla015206	Wild cucumber (PI 183967)	cpiwmB587
Cla015206	Melon (DHL92) v3.5.1	mewmB202
Cla015206	Melon (DHL92) v3.5.1	mewmB345
Cla015206	Watermelon (Charleston Gray)	wcgwmB007
Cla015206	Watermelon (Charleston Gray)	wcgwmB047
Cla015206	Cucumber (Chinese Long) v2	cuwmB568