Bhi10G000170 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G000170
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pectinesterase
Location	chr10 : 4964496 .. 4964651 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAAATAAGCCTTTTGTTATTCTTTATCGGTCTCCCAATAAGATGCCTAAATTGACCTCTGATGGTGATGCTGCCAAATACGGCACCGTTCAAAGTGCTTCCTTGATTGTTGAGTCTGATTATTTCGTTGCGGCCAATCTCGTCATCGAG

mRNA sequence

ATGGATAGAAATAAGCCTTTTGTTATTCTTTATCGGTCTCCCAATAAGATGCCTAAATTGACCTCTGATGGTGATGCTGCCAAATACGGCACCGTTCAAAGTGCTTCCTTGATTGTTGAGTCTGATTATTTCGTTGCGGCCAATCTCGTCATCGAG

Coding sequence (CDS)

ATGGATAGAAATAAGCCTTTTGTTATTCTTTATCGGTCTCCCAATAAGATGCCTAAATTGACCTCTGATGGTGATGCTGCCAAATACGGCACCGTTCAAAGTGCTTCCTTGATTGTTGAGTCTGATTATTTCGTTGCGGCCAATCTCGTCATCGAG

Protein sequence

MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE

Homology

[Close]

BLAST of Bhi10G000170 vs. TAIR10
Match: AT1G69940.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPF+ L   PN MP +T DG AAKYGTV SASLI+ SDYF+A N+V++
Sbjct: 109 IDRNKPFITLMGQPNAMPVITYDGTAAKYGTVDSASLIILSDYFMAVNIVVK 160

[Close]

BLAST of Bhi10G000170 vs. TAIR10
Match: AT5G07410.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPF+ L   PN MP +T DG AAKYGTV SASLI+ SDYF+A N+V++
Sbjct: 109 IDRNKPFITLMGQPNAMPVITYDGTAAKYGTVDSASLIILSDYFMAVNIVVK 160

[Close]

BLAST of Bhi10G000170 vs. TAIR10
Match: AT5G61680.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 3.5e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DR+KPF+ LY  PN MP LT DG AA+YGTV SA+LIV SDYF+A N++++
Sbjct: 86  IDRSKPFITLYGHPNAMPVLTFDGTAAQYGTVDSATLIVLSDYFMAVNIILK 137

[Close]

BLAST of Bhi10G000170 vs. TAIR10
Match: AT5G07430.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 1.4e-06
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +D  +PF+ L   P     LT  G AA+YGTV+SA+LIV ++YF AA+L I+
Sbjct: 110 IDIARPFITLLGQPGAETVLTYHGTAAQYGTVESATLIVWAEYFQAAHLTIK 161

[Close]

BLAST of Bhi10G000170 vs. TAIR10
Match: AT5G07420.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 3.2e-06
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVI 52
           +D  +P+V L   P     LT  G AAKYGTV+SA+LIV +  F+AANL I
Sbjct: 110 VDVGRPYVTLLGKPGAETNLTYAGTAAKYGTVESATLIVWATNFLAANLNI 160

[Close]

BLAST of Bhi10G000170 vs. Swiss-Prot
Match: sp|Q9LY19|PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana OX=3702 GN=PME48 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPF+ L   PN MP +T DG AAKYGTV SASLI+ SDYF+A N+V++
Sbjct: 109 IDRNKPFITLMGQPNAMPVITYDGTAAKYGTVDSASLIILSDYFMAVNIVVK 160

[Close]

BLAST of Bhi10G000170 vs. Swiss-Prot
Match: sp|Q84WM7|PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana OX=3702 GN=PPME1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPF+ L   PN MP +T DG AAKYGTV SASLI+ SDYF+A N+V++
Sbjct: 109 IDRNKPFITLMGQPNAMPVITYDGTAAKYGTVDSASLIILSDYFMAVNIVVK 160

[Close]

BLAST of Bhi10G000170 vs. Swiss-Prot
Match: sp|Q9FKF3|PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana OX=3702 GN=PME63 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 6.3e-12
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DR+KPF+ LY  PN MP LT DG AA+YGTV SA+LIV SDYF+A N++++
Sbjct: 86  IDRSKPFITLYGHPNAMPVLTFDGTAAQYGTVDSATLIVLSDYFMAVNIILK 137

[Close]

BLAST of Bhi10G000170 vs. Swiss-Prot
Match: sp|D8VPP5|AL11A_OLEEU (Pectinesterase 1 OS=Olea europaea OX=4146 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.8e-06
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 5   KPFVILY-RSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVI 52
           K ++  Y   PN MP L   G AA+YGTV SA+LIVES+YF A NL I
Sbjct: 114 KHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIVESNYFSAVNLKI 161

[Close]

BLAST of Bhi10G000170 vs. Swiss-Prot
Match: sp|B2VPR8|AL11B_OLEEU (Pectinesterase 2 OS=Olea europaea OX=4146 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.8e-06
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 5   KPFVILY-RSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVI 52
           K ++  Y   PN MP L   G AA+YGTV SA+LIVES+YF A NL I
Sbjct: 114 KHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIVESNYFSAVNLKI 161

[Close]

BLAST of Bhi10G000170 vs. TrEMBL
Match: tr|A0A1S3BMG4|A0A1S3BMG4_CUCME (Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103491453 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-14
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPFV LY SPN MP LT DGDA+KYGTV SA+LIVE+DYF AANLVIE
Sbjct: 113 IDRNKPFVTLYGSPNNMPNLTFDGDASKYGTVYSATLIVEADYFTAANLVIE 164

[Close]

BLAST of Bhi10G000170 vs. TrEMBL
Match: tr|A0A1S4DXM9|A0A1S4DXM9_CUCME (Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103491454 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPFV LY SP  MPKLT DGDAAK+GTV SA+LIVE+DYF AANLVIE
Sbjct: 108 IDRNKPFVTLYGSPKGMPKLTFDGDAAKFGTVYSATLIVEADYFTAANLVIE 159

[Close]

BLAST of Bhi10G000170 vs. TrEMBL
Match: tr|A0A0A0KEY2|A0A0A0KEY2_CUCSA (Pectinesterase OS=Cucumis sativus OX=3659 GN=Csa_6G428540 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-13
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPFV LY SPN MP LT DGDA+KYGTV SA+L VE+DYF AANL+IE
Sbjct: 114 IDRNKPFVTLYGSPNNMPNLTFDGDASKYGTVYSATLTVEADYFTAANLIIE 165

[Close]

BLAST of Bhi10G000170 vs. TrEMBL
Match: tr|A0A0A0KEH2|A0A0A0KEH2_CUCSA (Pectinesterase OS=Cucumis sativus OX=3659 GN=Csa_6G428030 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.5e-13
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MDRNKPFVILYRS-PNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPFV LY S P  MPKLT DGDAAKYGTV SA+LIVE+DYF AANL+IE
Sbjct: 113 IDRNKPFVTLYGSDPKNMPKLTFDGDAAKYGTVYSATLIVEADYFTAANLIIE 165

[Close]

BLAST of Bhi10G000170 vs. TrEMBL
Match: tr|A0A058ZYU5|A0A058ZYU5_EUCGR (Pectinesterase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00113 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           ++R KPFV LY SPN MPKLT  G A +YGTV SAS+IVESDYFV ANL+IE
Sbjct: 119 IERTKPFVTLYGSPNDMPKLTYSGTAQQYGTVDSASIIVESDYFVGANLIIE 170

[Close]

BLAST of Bhi10G000170 vs. NCBI nr
Match: XP_022986221.1 (probable pectinesterase 48 [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-14
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPF+ LY SPN MP LT DGDA KYGTV SA+LIVE+DYFVAANLVIE
Sbjct: 107 IDRNKPFITLYGSPNNMPNLTFDGDATKYGTVYSATLIVEADYFVAANLVIE 158

[Close]

BLAST of Bhi10G000170 vs. NCBI nr
Match: XP_008449623.1 (PREDICTED: putative pectinesterase 63 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-14
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPFV LY SPN MP LT DGDA+KYGTV SA+LIVE+DYF AANLVIE
Sbjct: 113 IDRNKPFVTLYGSPNNMPNLTFDGDASKYGTVYSATLIVEADYFTAANLVIE 164

[Close]

BLAST of Bhi10G000170 vs. NCBI nr
Match: XP_016900732.1 (PREDICTED: pectinesterase PPME1-like [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPFV LY SP  MPKLT DGDAAK+GTV SA+LIVE+DYF AANLVIE
Sbjct: 108 IDRNKPFVTLYGSPKGMPKLTFDGDAAKFGTVYSATLIVEADYFTAANLVIE 159

[Close]

BLAST of Bhi10G000170 vs. NCBI nr
Match: XP_022943549.1 (probable pectinesterase 48 [Cucurbita moschata])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           ++RNKPF+ LY SPN MP LT DGDA KYGT+ SA+LIVE+DYFVAANLVIE
Sbjct: 107 INRNKPFITLYGSPNNMPNLTFDGDATKYGTIYSATLIVEADYFVAANLVIE 158

[Close]

BLAST of Bhi10G000170 vs. NCBI nr
Match: XP_023512285.1 (probable pectinesterase 48 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   MDRNKPFVILYRSPNKMPKLTSDGDAAKYGTVQSASLIVESDYFVAANLVIE 53
           +DRNKPF+ LY SPN MP LT DGDA KYGT+ S +LIVE+DYFVAANLVIE
Sbjct: 107 IDRNKPFITLYGSPNNMPNLTFDGDATKYGTIYSPTLIVEADYFVAANLVIE 158

The following BLAST results are available for this feature:

BLAST of Bhi10G000170 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69940.1	1.2e-13	63.46	Pectin lyase-like superfamily protein	[more]
AT5G07410.1	1.2e-13	63.46	Pectin lyase-like superfamily protein	[more]
AT5G61680.1	3.5e-13	61.54	Pectin lyase-like superfamily protein	[more]
AT5G07430.1	1.4e-06	48.08	Pectin lyase-like superfamily protein	[more]
AT5G07420.1	3.2e-06	50.98	Pectin lyase-like superfamily protein	[more]

BLAST of Bhi10G000170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LY19\|PME48_ARATH	2.2e-12	63.46	Probable pectinesterase 48 OS=Arabidopsis thaliana OX=3702 GN=PME48 PE=2 SV=2	[more]
sp\|Q84WM7\|PPME1_ARATH	2.2e-12	63.46	Pectinesterase PPME1 OS=Arabidopsis thaliana OX=3702 GN=PPME1 PE=1 SV=1	[more]
sp\|Q9FKF3\|PME63_ARATH	6.3e-12	61.54	Putative pectinesterase 63 OS=Arabidopsis thaliana OX=3702 GN=PME63 PE=3 SV=2	[more]
sp\|D8VPP5\|AL11A_OLEEU	6.8e-06	56.25	Pectinesterase 1 OS=Olea europaea OX=4146 PE=1 SV=1	[more]
sp\|B2VPR8\|AL11B_OLEEU	6.8e-06	56.25	Pectinesterase 2 OS=Olea europaea OX=4146 PE=1 SV=1	[more]

BLAST of Bhi10G000170 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BMG4\|A0A1S3BMG4_CUCME	5.0e-14	78.85	Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103491453 PE=4 SV=1	[more]
tr\|A0A1S4DXM9\|A0A1S4DXM9_CUCME	1.5e-13	78.85	Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103491454 PE=4 SV=1	[more]
tr\|A0A0A0KEY2\|A0A0A0KEY2_CUCSA	2.5e-13	75.00	Pectinesterase OS=Cucumis sativus OX=3659 GN=Csa_6G428540 PE=4 SV=1	[more]
tr\|A0A0A0KEH2\|A0A0A0KEH2_CUCSA	9.5e-13	77.36	Pectinesterase OS=Cucumis sativus OX=3659 GN=Csa_6G428030 PE=4 SV=1	[more]
tr\|A0A058ZYU5\|A0A058ZYU5_EUCGR	1.4e-11	71.15	Pectinesterase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00113 PE=4 SV=1	[more]

BLAST of Bhi10G000170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986221.1	4.5e-14	78.85	probable pectinesterase 48 [Cucurbita maxima]	[more]
XP_008449623.1	7.6e-14	78.85	PREDICTED: putative pectinesterase 63 [Cucumis melo]	[more]
XP_016900732.1	2.2e-13	78.85	PREDICTED: pectinesterase PPME1-like [Cucumis melo]	[more]
XP_022943549.1	2.2e-13	75.00	probable pectinesterase 48 [Cucurbita moschata]	[more]
XP_023512285.1	2.2e-13	75.00	probable pectinesterase 48 [Cucurbita pepo subsp. pepo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0045490	pectin catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0045330	aspartyl esterase activity
molecular_function	GO:0030599	pectinesterase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M000170	Bhi10M000170	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31321:SF23	PECTINESTERASE PPME1-RELATED	coord: 1..51
None	No IPR available	PANTHER	PTHR31321	FAMILY NOT NAMED	coord: 1..51

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G000170	Watermelon (97103) v1	wgowmB378
Bhi10G000170	Silver-seed gourd	carwgoB1067
Bhi10G000170	Cucumber (Gy14) v1	cgywgoB110
Bhi10G000170	Cucumber (Gy14) v2	cgybwgoB568
Bhi10G000170	Cucurbita maxima (Rimu)	cmawgoB0693
Bhi10G000170	Cucurbita maxima (Rimu)	cmawgoB0757
Bhi10G000170	Cucurbita moschata (Rifu)	cmowgoB0687
Bhi10G000170	Cucurbita moschata (Rifu)	cmowgoB0747
Bhi10G000170	Cucurbita pepo (Zucchini)	cpewgoB0354
Bhi10G000170	Cucurbita pepo (Zucchini)	cpewgoB0944
Bhi10G000170	Wild cucumber (PI 183967)	cpiwgoB601
Bhi10G000170	Cucumber (Chinese Long) v3	cucwgoB617
Bhi10G000170	Cucumber (Chinese Long) v2	cuwgoB596
Bhi10G000170	Bottle gourd (USVL1VR-Ls)	lsiwgoB079
Bhi10G000170	Melon (DHL92) v3.6.1	medwgoB485
Bhi10G000170	Melon (DHL92) v3.5.1	mewgoB484
Bhi10G000170	Watermelon (Charleston Gray)	wcgwgoB283
Bhi10G000170	Watermelon (97103) v2	wgowmbB353