Bhi10M000277 (mRNA) Wax gourd

Overview
NameBhi10M000277
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr10 : 7610675 .. 7610944 (+)
Sequence length270
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGATCAAAAGGCAATAGCCTATTCTTCATCTTCAAAGAGTAAAAACCCATCTTCTTTAAACACGACACCCTCTTCAATGAGTGCTGATCAATATGCAATGGAATTAGGGTTCACTTCTATAACCTGTTCTAGAACGAAATCCACTGGCATACGGCTAGGATCAACCATGGAGTCATCCACTCCACCTCCAAGGCCTCCTTTCTTTCTTGTTAGACCACCCACTGATGGTGTTACTCAATTAAGGTCCACTGCCTCACCTTCATAA

mRNA sequence

ATGAGGGATCAAAAGGCAATAGCCTATTCTTCATCTTCAAAGAGTAAAAACCCATCTTCTTTAAACACGACACCCTCTTCAATGAGTGCTGATCAATATGCAATGGAATTAGGGTTCACTTCTATAACCTGTTCTAGAACGAAATCCACTGGCATACGGCTAGGATCAACCATGGAGTCATCCACTCCACCTCCAAGGCCTCCTTTCTTTCTTGTTAGACCACCCACTGATGGTGTTACTCAATTAAGGTCCACTGCCTCACCTTCATAA

Coding sequence (CDS)

ATGAGGGATCAAAAGGCAATAGCCTATTCTTCATCTTCAAAGAGTAAAAACCCATCTTCTTTAAACACGACACCCTCTTCAATGAGTGCTGATCAATATGCAATGGAATTAGGGTTCACTTCTATAACCTGTTCTAGAACGAAATCCACTGGCATACGGCTAGGATCAACCATGGAGTCATCCACTCCACCTCCAAGGCCTCCTTTCTTTCTTGTTAGACCACCCACTGATGGTGTTACTCAATTAAGGTCCACTGCCTCACCTTCATAA

Protein sequence

MRDQKAIAYSSSSKSKNPSSLNTTPSSMSADQYAMELGFTSITCSRTKSTGIRLGSTMESSTPPPRPPFFLVRPPTDGVTQLRSTASPS
Homology
[Close]
BLAST of Bhi10M000277 vs. TrEMBL
Match: tr|E5GCE6|E5GCE6_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.1e-08
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 0 

Query: 10 SSSSKSKNP-SSLNTTPSSMSADQYAMELGFTSITCSRTKSTGIRLGSTMESSTPPPRPP 69
          S+SSK   P SS N+ PS MSA QY M+LGFT +T SR++ + I +GS  ESST PPRP 
Sbjct: 14 STSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESST-PPRPS 73

Query: 70 FFLVRPPTDGVTQLRSTASPS 90
            L+R P+ GV Q+R  ASPS
Sbjct: 74 VNLIR-PSGGVIQMRPPASPS 92

[Close]
BLAST of Bhi10M000277 vs. TrEMBL
Match: tr|A0A0A0K595|A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 0 

Query: 8  AYSSSSKSKNPSSL-NTTPSSMSADQYAMELGFTSITCSRTKSTGIRLGSTMESSTPPPR 67
          A S SS+  +PSS  N  PS MSADQYAM LGFT++T SR +S+ I++G     S+ PPR
Sbjct: 14 ANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIGYNSTESSTPPR 73

Query: 68 PPFFLVRPPTDGVTQLRSTAS 88
          P   L+RP  + V Q R +AS
Sbjct: 74 PSTNLIRPSGE-VIQTRPSAS 93

[Close]
BLAST of Bhi10M000277 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-08
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 0 

Query: 10 SSSSKSKNP-SSLNTTPSSMSADQYAMELGFTSITCSRTKSTGIRLGSTMESSTPPPRPP 69
          S+SSK   P SS N+ PS MSA QY M+LGFT +T SR++ + I +GS  ESST PPRP 
Sbjct: 14 STSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESST-PPRPS 73

Query: 70 FFLVRPPTDGVTQLRSTASPS 90
            L+R P+ GV Q+R  ASPS
Sbjct: 74 VNLIR-PSGGVIQMRPPASPS 92

[Close]
BLAST of Bhi10M000277 vs. NCBI nr
Match: KGN44648.1 (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 4.1e-07
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 0 

Query: 8  AYSSSSKSKNPSSL-NTTPSSMSADQYAMELGFTSITCSRTKSTGIRLGSTMESSTPPPR 67
          A S SS+  +PSS  N  PS MSADQYAM LGFT++T SR +S+ I++G     S+ PPR
Sbjct: 14 ANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIGYNSTESSTPPR 73

Query: 68 PPFFLVRPPTDGVTQLRSTAS 88
          P   L+RP  + V Q R +AS
Sbjct: 74 PSTNLIRPSGE-VIQTRPSAS 93

The following BLAST results are available for this feature:
BLAST of Bhi10M000277 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi10M000277 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi10M000277 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GCE6|E5GCE6_CUCME4.1e-0855.56Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A0A0K595|A0A0A0K595_CUCSA2.7e-0750.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of Bhi10M000277 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34145.16.3e-0855.56hypothetical protein [Cucumis melo subsp. melo][more]
KGN44648.14.1e-0750.62hypothetical protein Csa_7G361530 [Cucumis sativus][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi10G000277Bhi10G000277gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi10M000277.exon1Bhi10M000277.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi10M000277cds.Bhi10M000277CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi10M000277Bhi10M000277-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..89