Bhi01G002817 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G002817
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribonuclease H-like domain containing protein
Location	chr1 : 91967805 .. 91968652 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTTCCTAAAAAACATCAAAATCTTCCTTTGAAAAGCTCTCCACAATTTTATTCCAATGAGGAAAAATCTAGTAAAGAAAAGGTATGAATATTGAAGCTGTCTGTCCATTTTGCTCCAACTCTACAGAATTGATCAACCATATCCTGTTCTTTTGTTCCAGAGCTACATTTTATTCTTGCTTCATGGATCCAAATAATACTTGCACGCTTGACAAGCTTAATTTGATTGCGATTGGCTGTTGGACTATTTGGTCTGATAGAAATAAAATGATTCATGGATCAATTATAGCTGATGTTGAGTTTACTAGCCGATGGATTCAAAGATATAAAGAAGAAGTTTCAAAGAAGTACACTGGTTTGAAGTCAGGATGTCTAGAATTGGTTGATAATCAAAGAATGTTATTACCGTAGGAATGGAGGCCTCCGAATGTTGGGTTTCTGAAACTAAATGTGGACGCAACTTGGTCTTTGATCCCTCGATCGACTGGTTTTAGTGCTATTTTGAGAGATTGGGAAGATATTGTGAAAGCTGTAGCCCTAAATCACCATTCAACCTCTTATGATGTTCCCTTAGCTGAGCTTTTAGCTATCTTGTATGGTCTTTGTCTGGCTAGAAGCGTGGGAGTAAATTGCCTTGTGGTTGAATCTGATTGTTTGGAAGCTATTAACCTGATTAATAGGATTTCATCTTTTTTGAGTGAGGTGAATTGTTGGCTGGAGGATATCTGGAGCAGCTCTTTGTCTTTTGAAGTCGTATCTTTTGTTTTTGTGAAGAGCTTCTATAATTCTTTGGTTGATAATTTAGCCAAAAGAGCTAAAATGTCAGCTTTATCAAGTATTTGA

mRNA sequence

ATGAACGTTCCTAAAAAACATCAAAATCTTCCTTTGAAAAGCTCTCCACAATTTTATTCCAATGAGGAAAAATCTAGTAAAGAAAAGGAATGGAGGCCTCCGAATGTTGGGTTTCTGAAACTAAATGTGGACGCAACTTGGTCTTTGATCCCTCGATCGACTGGTTTTAGTGCTATTTTGAGAGATTGGGAAGATATTGTGAAAGCTGTAGCCCTAAATCACCATTCAACCTCTTATGATGTTCCCTTAGCTGAGCTTTTAGCTATCTTGTATGGTCTTTGTCTGGCTAGAAGCGTGGGAGTAAATTGCCTTGTGGTTGAATCTGATTGTTTGGAAGCTATTAACCTGATTAATAGGATTTCATCTTTTTTGAGTGAGGTGAATTGTTGGCTGGAGGATATCTGGAGCAGCTCTTTGTCTTTTGAAGTCGTATCTTTTGTTTTTGTGAAGAGCTTCTATAATTCTTTGGTTGATAATTTAGCCAAAAGAGCTAAAATGTCAGCTTTATCAAGTATTTGA

Coding sequence (CDS)

ATGAACGTTCCTAAAAAACATCAAAATCTTCCTTTGAAAAGCTCTCCACAATTTTATTCCAATGAGGAAAAATCTAGTAAAGAAAAGGAATGGAGGCCTCCGAATGTTGGGTTTCTGAAACTAAATGTGGACGCAACTTGGTCTTTGATCCCTCGATCGACTGGTTTTAGTGCTATTTTGAGAGATTGGGAAGATATTGTGAAAGCTGTAGCCCTAAATCACCATTCAACCTCTTATGATGTTCCCTTAGCTGAGCTTTTAGCTATCTTGTATGGTCTTTGTCTGGCTAGAAGCGTGGGAGTAAATTGCCTTGTGGTTGAATCTGATTGTTTGGAAGCTATTAACCTGATTAATAGGATTTCATCTTTTTTGAGTGAGGTGAATTGTTGGCTGGAGGATATCTGGAGCAGCTCTTTGTCTTTTGAAGTCGTATCTTTTGTTTTTGTGAAGAGCTTCTATAATTCTTTGGTTGATAATTTAGCCAAAAGAGCTAAAATGTCAGCTTTATCAAGTATTTGA

Protein sequence

MNVPKKHQNLPLKSSPQFYSNEEKSSKEKEWRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDVPLAELLAILYGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFEVVSFVFVKSFYNSLVDNLAKRAKMSALSSI

Homology

[Close]

BLAST of Bhi01G002817 vs. TAIR10
Match: AT5G19270.1 (unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-07
Identity = 37/138 (26.81%), Postives = 66/138 (47.83%), Query Frame = 0


Query: 25  SSKEKEWRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDVPLA 84
           +S +  W PP+ G +K NV+A W      +G + I RD   +    A +  + S +  +A
Sbjct: 55  TSLDLNWTPPDFGIVKCNVNAHWGNADMMSGVAWIARDVNGLALYHARDAFTRSSNRIMA 114

Query: 85  ELLAILYGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFEVV 144
           EL  IL+ +   R + +  +++ SDC  AI  +     +      WL+ I+ +  SF  +
Sbjct: 115 ELRCILWVVKSLRDLRLQNVIISSDCQAAIAALYNPRDW-PRYAMWLDTIFIACQSFPFI 174

Query: 145 SFVFVKSFYNSLVDNLAK 163
            F  V    NS+  ++A+
Sbjct: 175 IFELVSCPANSIARDIAE 191

[Close]

BLAST of Bhi01G002817 vs. TAIR10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 8.1e-06
Identity = 35/134 (26.12%), Postives = 59/134 (44.03%), Query Frame = 0


Query: 31  WRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDVPLAELLAIL 90
           WRPP   ++K N DATW+      G   +LR+ +  VK +          V  AEL A+ 
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479

Query: 91  YGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFEVVSFVFVK 150
           + +        N ++ ESD    I ++N        +   ++D+      F  V FVF+ 
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLIEILNN-DEIWPSLKPTIQDLQRLLSQFTEVKFVFIP 539

Query: 151 SFYNSLVDNLAKRA 165
              N+L + +A+ +
Sbjct: 540 REGNTLAERVARES 552

[Close]

BLAST of Bhi01G002817 vs. TAIR10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein)

HSP 1 Score: 42.4 bits (98), Expect = 3.4e-04
Identity = 50/165 (30.30%), Postives = 71/165 (43.03%), Query Frame = 0


Query: 1   MNVPKKHQNLPLKSSPQFYSNEEKSSKEKEWRPPNVGFLKLNVDATWSLIP-RSTGFSAI 60
           +N  + H+  P   SP     E K     EWR P   ++K N DA + +    +TG   I
Sbjct: 303 LNATQSHKKTP---SPTRQIAENKI----EWRNPPATYVKCNFDAGFDVQKLEATGGWII 362

Query: 61  LRDWEDIVK--AVALNHHSTSYDVPLAELLAILYGLCLARSVGVNCLVVESDCLEAINLI 120
              +   +   ++ L H S   +     LLA L    +    G   + +E DC   INLI
Sbjct: 363 RNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIR---GYTQVFMEGDCQTLINLI 422

Query: 121 NRISSFLSEVNCWLEDIWSSSLSFEVVSFVFVKSFYNSLVDNLAK 163
           N I SF S +   LEDI   +  F  + F F++   N L   LAK
Sbjct: 423 NGI-SFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAK 456

[Close]

BLAST of Bhi01G002817 vs. TrEMBL
Match: tr|A0A1R3JX53|A0A1R3JX53_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_03816 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 31  WRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDVPLAELLAIL 90
           W+PP  G LK+N DA +      TG +A+LRD E  V +  ++ +    DV  A + AI 
Sbjct: 230 WKPPPSGVLKVNTDAAFDRARVGTGLAAVLRDSEGRVLSTVVDCNLFVKDVLYAGVFAIR 289

Query: 91  YGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFEVVSFVFVK 150
            G+ +AR+ G++  ++ SDCL AI  INR++    E +C +E+IW  +  FE ++FV VK
Sbjct: 290 LGVNMARADGISRCIILSDCLMAIFAINRLTKCNWEGDCLIEEIWELANFFESITFVHVK 349

Query: 151 SFYNSLVDNLAKRAKMSALSSI 173
              N     +AK A ++  + +
Sbjct: 350 REANYCAHTVAKFAALNVATYV 371

[Close]

BLAST of Bhi01G002817 vs. TrEMBL
Match: tr|A0A1S8AC93|A0A1S8AC93_CITLI (Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.3e-12
Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 26  SKEKEWRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWE-DIVKAVALNHHSTSYDVPLA 85
           SK+K+W PP +G+ K+NVDA      + TG   ++R+ +  +V   A+ +     +V  A
Sbjct: 78  SKQKQWCPPPIGYYKVNVDAAVQAGAQLTGIRVVIRNSQGQVVATEAVKNTKPQENVSAA 137

Query: 86  ELLAILYGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFEVV 145
           E  A+  G+ +A   G+  +++E+DC+E +NL N I+S   E+   + DI S    F+ +
Sbjct: 138 EAEAVKRGMEMAIEAGLLAVIIETDCMEVVNLANNITSSRKEILWAISDIQSYMEKFQPI 197

Query: 146 SFVFVKSFYNSLVDNLAKRAKMSALS 171
           +   V    NS   +LA+RA  S+ S
Sbjct: 198 TIQHVSRCCNSCAQSLAERALRSSES 223

[Close]

BLAST of Bhi01G002817 vs. TrEMBL
Match: tr|A0A067E4Z5|A0A067E4Z5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g042421mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 44/141 (31.21%), Postives = 75/141 (53.19%), Query Frame = 0


Query: 23  EKSSKEKEWRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDVP 82
           E+  KE +W+ P +G+LK+NVD    +  +  G   ++RD +D   A A+N      +V 
Sbjct: 10  EEDGKEDQWQSPPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVA 69

Query: 83  LAELLAILYGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFE 142
           +AE  AI +G+ +A   G+  +++ESDCLE + L+N   S ++E++  + +I   + SF+
Sbjct: 70  MAEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILEMNNSFQ 129

Query: 143 VVSFVFVKSFYNSLVDNLAKR 164
                     YNS    L  R
Sbjct: 130 NFRAQHTARIYNSAAHALGFR 150

[Close]

BLAST of Bhi01G002817 vs. TrEMBL
Match: tr|A0A1R3G9C4|A0A1R3G9C4_COCAP (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_27657 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 51/140 (36.43%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 25   SSKEKEWRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDVPLA 84
            S++   W PP VG  KLNVDA +       G  A++RD    V++ A    S   D+  A
Sbjct: 873  STQLVRWMPPTVGSFKLNVDAAFDKNRGVAGLGAVIRDHNGDVRSYATKQLSFVSDLFYA 932

Query: 85   ELLAILYGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFEVV 144
            E+ AI  GL LA+  G+   +VESDCL  I+ IN  S+   E  C +++I + + SFE +
Sbjct: 933  EIYAIKMGLQLAKEEGLQRYLVESDCLVGISAINSSSTLFWEGACLIDEIRNLATSFESI 992

Query: 145  SFVFVKSFYNSLVDNLAKRA 165
             F  +    N     LAK A
Sbjct: 993  RFRHLNRKANYCAHGLAKFA 1012

[Close]

BLAST of Bhi01G002817 vs. TrEMBL
Match: tr|A0A1R3HC77|A0A1R3HC77_COCAP (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.9e-11
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 31   WRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDVPLAELLAIL 90
            W PP     KLN D T+++         +LRD    ++  A    S   DV  +E+LAI 
Sbjct: 1406 WHPPPASVYKLNTDTTYNVDSHEAKLGVVLRDSTGQIRFSACKRISFVADVMQSEILAIH 1465

Query: 91   YGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFEVVSFVFVK 150
            YGL +A+  G+  LVV+SDCL+AI  I + S+   +  C +E+I + + SF + SF  VK
Sbjct: 1466 YGLLVAQLNGIEKLVVKSDCLQAIREIPKGSASTWDSACLIEEIQTFASSFSLCSFKHVK 1525

Query: 151  SFYNSLVDNLAK 163
               N L  ++A+
Sbjct: 1526 RNANVLAHSIAQ 1537

[Close]

BLAST of Bhi01G002817 vs. NCBI nr
Match: OMO99423.1 (hypothetical protein CCACVL1_03816 [Corchorus capsularis])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 31  WRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDVPLAELLAIL 90
           W+PP  G LK+N DA +      TG +A+LRD E  V +  ++ +    DV  A + AI 
Sbjct: 230 WKPPPSGVLKVNTDAAFDRARVGTGLAAVLRDSEGRVLSTVVDCNLFVKDVLYAGVFAIR 289

Query: 91  YGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFEVVSFVFVK 150
            G+ +AR+ G++  ++ SDCL AI  INR++    E +C +E+IW  +  FE ++FV VK
Sbjct: 290 LGVNMARADGISRCIILSDCLMAIFAINRLTKCNWEGDCLIEEIWELANFFESITFVHVK 349

Query: 151 SFYNSLVDNLAKRAKMSALSSI 173
              N     +AK A ++  + +
Sbjct: 350 REANYCAHTVAKFAALNVATYV 371

[Close]

BLAST of Bhi01G002817 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 84.3 bits (207), Expect = 4.3e-13
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 22   EEKSSKEKEWRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDV 81
            +++   +++W+PP+   LKLNVDA  S   +  G  AI+RD E  + AV +        V
Sbjct: 1284 KDRGIDQQKWKPPSQNVLKLNVDAAVSTKDQKVGLGAIVRDAEGKILAVGIKQAQFRERV 1343

Query: 82   PLAELLAILYGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSF 141
             LAE  AI +GL +A  +  + L+VESDC E + L+N      +E++  L D+   S  F
Sbjct: 1344 SLAEAEAIHWGLQVANQISSSSLIVESDCKEVVELLNNTKGSRTEIHWILSDVRRESKEF 1403

Query: 142  EVVSFVFVKSFYNSLVDNLAKRAKMSALSSI 173
            + V F F+    N+    LAK A  ++ + +
Sbjct: 1404 KQVQFSFIPRTCNTYAHALAKFALRNSSTDV 1434

[Close]

BLAST of Bhi01G002817 vs. NCBI nr
Match: XP_006471930.1 (uncharacterized protein LOC102617744 [Citrus sinensis])

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-12
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 13  KSSPQFYSNEEKSSKEKEWRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVAL 72
           K+     SN  + S+++ W PP    LKLNVDA  +   +  G  A+LRD    V A  +
Sbjct: 119 KTGTLHISNTREESQQR-WSPPPTNVLKLNVDAATNSKDQKVGLGAVLRDSNGRVVAAGI 178

Query: 73  NHHSTSYDVPLAELLAILYGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLE 132
              S   DV  AE  AI +GL +A+      L+VE+DC +   L+N      SE+   + 
Sbjct: 179 KQASFRKDVSFAEAEAIQWGLQIAKKAAAASLIVETDCKDVAELVNNTKGSRSEIFWIIS 238

Query: 133 DIWSSSLSFEVVSFVFVKSFYNSLVDNLAKRA 165
           +I +    F+ + F FV  F N+   +LAK A
Sbjct: 239 EIQTQKREFQRIHFNFVPRFCNAHAHSLAKHA 269

[Close]

BLAST of Bhi01G002817 vs. NCBI nr
Match: XP_024953934.1 (uncharacterized protein LOC112498177 [Citrus sinensis])

HSP 1 Score: 80.1 bits (196), Expect = 8.1e-12
Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 26  SKEKEWRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWE-DIVKAVALNHHSTSYDVPLA 85
           SK+K+W PP +G+ K+NVDA      + TG   ++R+ +  +V   A+ +     +V  A
Sbjct: 126 SKQKQWCPPPIGYYKVNVDAAVQAGAQLTGIRVVIRNSQGQVVATEAVKNTKPQENVSAA 185

Query: 86  ELLAILYGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFEVV 145
           E  A+  G+ +A   G+  +++E+DC+E +NL N I+S   E+   + DI S    F+ +
Sbjct: 186 EAEAVKRGMEMAIEAGLLAVIIETDCMEVVNLANNITSSRKEILWAISDIQSYMEKFQPI 245

Query: 146 SFVFVKSFYNSLVDNLAKRAKMSALS 171
           +   V    NS   +LA+RA  S+ S
Sbjct: 246 TIQHVSRCCNSCAQSLAERALRSSES 271

[Close]

BLAST of Bhi01G002817 vs. NCBI nr
Match: KDO46297.1 (hypothetical protein CISIN_1g042421mg, partial [Citrus sinensis])

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 44/141 (31.21%), Postives = 75/141 (53.19%), Query Frame = 0


Query: 23  EKSSKEKEWRPPNVGFLKLNVDATWSLIPRSTGFSAILRDWEDIVKAVALNHHSTSYDVP 82
           E+  KE +W+ P +G+LK+NVD    +  +  G   ++RD +D   A A+N      +V 
Sbjct: 10  EEDGKEDQWQSPPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVA 69

Query: 83  LAELLAILYGLCLARSVGVNCLVVESDCLEAINLINRISSFLSEVNCWLEDIWSSSLSFE 142
           +AE  AI +G+ +A   G+  +++ESDCLE + L+N   S ++E++  + +I   + SF+
Sbjct: 70  MAEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILEMNNSFQ 129

Query: 143 VVSFVFVKSFYNSLVDNLAKR 164
                     YNS    L  R
Sbjct: 130 NFRAQHTARIYNSAAHALGFR 150

The following BLAST results are available for this feature:

BLAST of Bhi01G002817 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19270.1	2.5e-07	26.81	unknown protein	[more]
AT4G29090.1	8.1e-06	26.12	Ribonuclease H-like superfamily protein	[more]
AT3G09510.1	3.4e-04	30.30	Ribonuclease H-like superfamily protein	[more]

BLAST of Bhi01G002817 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G002817 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1R3JX53\|A0A1R3JX53_COCAP	2.2e-13	35.21	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_03816 PE=4 ...	[more]
tr\|A0A1S8AC93\|A0A1S8AC93_CITLI	5.3e-12	32.19	Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment) ...	[more]
tr\|A0A067E4Z5\|A0A067E4Z5_CITSI	1.6e-11	31.21	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g042421m...	[more]
tr\|A0A1R3G9C4\|A0A1R3G9C4_COCAP	2.7e-11	36.43	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_27657 PE=4 SV...	[more]
tr\|A0A1R3HC77\|A0A1R3HC77_COCAP	5.9e-11	35.61	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV...	[more]

BLAST of Bhi01G002817 vs. NCBI nr


Match Name	E-value	Identity	Description
OMO99423.1	3.3e-13	35.21	hypothetical protein CCACVL1_03816 [Corchorus capsularis]	[more]
XP_006491472.1	4.3e-13	33.11	uncharacterized protein LOC102626455 [Citrus sinensis]	[more]
XP_006471930.1	6.2e-12	33.55	uncharacterized protein LOC102617744 [Citrus sinensis]	[more]
XP_024953934.1	8.1e-12	32.19	uncharacterized protein LOC112498177 [Citrus sinensis]	[more]
KDO46297.1	2.4e-11	31.21	hypothetical protein CISIN_1g042421mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M002817	Bhi01M002817	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13456	RVT_3	coord: 42..164 e-value: 4.4E-19 score: 68.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR33033:SF53	BETA-GALACTOSIDASE RELATED PROTEIN-RELATED	coord: 24..164
None	No IPR available	PANTHER	PTHR33033	FAMILY NOT NAMED	coord: 24..164
None	No IPR available	CDD	cd06222	RNase_H_like	coord: 41..162 e-value: 1.14539E-16 score: 71.1912
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 39..170 e-value: 7.3E-10 score: 41.0
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 38..165

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G002817	Cucumber (Gy14) v1	cgywgoB130
Bhi01G002817	Cucumber (Gy14) v2	cgybwgoB353
Bhi01G002817	Cucurbita maxima (Rimu)	cmawgoB0318
Bhi01G002817	Cucurbita maxima (Rimu)	cmawgoB0560
Bhi01G002817	Cucurbita moschata (Rifu)	cmowgoB0306
Bhi01G002817	Cucurbita moschata (Rifu)	cmowgoB0557
Bhi01G002817	Cucurbita pepo (Zucchini)	cpewgoB0682
Bhi01G002817	Cucurbita pepo (Zucchini)	cpewgoB0775
Bhi01G002817	Wild cucumber (PI 183967)	cpiwgoB368
Bhi01G002817	Cucumber (Chinese Long) v3	cucwgoB371
Bhi01G002817	Cucumber (Chinese Long) v2	cuwgoB366
Bhi01G002817	Bottle gourd (USVL1VR-Ls)	lsiwgoB558
Bhi01G002817	Melon (DHL92) v3.6.1	medwgoB583
Bhi01G002817	Melon (DHL92) v3.5.1	mewgoB578
Bhi01G002817	Watermelon (Charleston Gray)	wcgwgoB574
Bhi01G002817	Watermelon (97103) v2	wgowmbB221
Bhi01G002817	Watermelon (97103) v1	wgowmB178
Bhi01G002817	Silver-seed gourd	carwgoB0139
Bhi01G002817	Silver-seed gourd	carwgoB0250